RNA–Protein interactions for RNA: ENST00000284637.13

SH3RF1-201, Transcript of SH3 domain containing ring finger 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SH3RF1, Length 5,272 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1-201ENST00000284637 CLPSP04118 112 aa13.56□□□□□ -0.24
SH3RF1-201ENST00000284637 LINC00205P59089 165 aa13.56□□□□□ -0.24
SH3RF1-201ENST00000284637 TMEM95Q3KNT9 176 aa13.56□□□□□ -0.24
SH3RF1-201ENST00000284637 FAM57AQ8TBR7 257 aa13.56□□□□□ -0.24
SH3RF1-201ENST00000284637 SPRR3Q9UBC9 169 aa13.56□□□□□ -0.24
SH3RF1-201ENST00000284637 TRAV8-4A0A0B4J246 113 aa13.56□□□□□ -0.24
SH3RF1-201ENST00000284637 IGKV3D-20A0A0C4DH25 116 aa13.56□□□□□ -0.24
SH3RF1-201ENST00000284637 A0A0G2JRQ6 117 aa13.56□□□□□ -0.24
SH3RF1-201ENST00000284637 H3BRM9 83 aa13.56□□□□□ -0.24
SH3RF1-201ENST00000284637 NXT2Q9NPJ8 142 aaKnown RBP13.56□□□□□ -0.24
SH3RF1-201ENST00000284637 SMPXQ9UHP9 88 aa13.56□□□□□ -0.24
SH3RF1-201ENST00000284637 CEACAM8P31997 349 aaPredicted RBP13.56□□□□□ -0.24
SH3RF1-201ENST00000284637 YPEL3P61236 119 aaPredicted RBP13.56□□□□□ -0.24
SH3RF1-201ENST00000284637 ABHD17AQ96GS6 310 aa13.56□□□□□ -0.24
SH3RF1-201ENST00000284637 DUX3Q96PT4 197 aa13.56□□□□□ -0.24
SH3RF1-201ENST00000284637 COA6Q5JTJ3 125 aaKnown RBP13.55□□□□□ -0.24
SH3RF1-201ENST00000284637 UNQ6494/PRO21346Q6UXR6 183 aa13.55□□□□□ -0.24
SH3RF1-201ENST00000284637 EXOC3-AS1Q8N2X6 119 aa13.55□□□□□ -0.24
SH3RF1-201ENST00000284637 COX6B1P14854 86 aa13.55□□□□□ -0.24
SH3RF1-201ENST00000284637 SRSF1Q07955 248 aaKnown RBP eCLIP13.55□□□□□ -0.24
SH3RF1-201ENST00000284637 LINC01559Q495D7 138 aa13.55□□□□□ -0.24
SH3RF1-201ENST00000284637 NCR2O95944 276 aa13.55□□□□□ -0.24
SH3RF1-201ENST00000284637 CD7P09564 240 aa13.55□□□□□ -0.24
SH3RF1-201ENST00000284637 MYOD1P15172 320 aa13.55□□□□□ -0.24
SH3RF1-201ENST00000284637 C8orf46Q8TAG6 207 aa13.55□□□□□ -0.24
SH3RF1-201ENST00000284637 ITLN2Q8WWU7 325 aaPredicted RBP13.55□□□□□ -0.24
SH3RF1-201ENST00000284637 METRNQ9UJH8 293 aa13.55□□□□□ -0.24
SH3RF1-201ENST00000284637 PMS2P5A8MQ11 134 aa13.55□□□□□ -0.24
SH3RF1-201ENST00000284637 PPBPP02775 128 aa13.55□□□□□ -0.24
SH3RF1-201ENST00000284637 FXYD7P58549 80 aa13.55□□□□□ -0.24
SH3RF1-201ENST00000284637 TSSC4Q9Y5U2 329 aaPredicted RBP13.55□□□□□ -0.24
SH3RF1-201ENST00000284637 Q6ZRM9 215 aa13.54□□□□□ -0.24
SH3RF1-201ENST00000284637 LYPD6BQ8NI32 183 aa13.54□□□□□ -0.24
SH3RF1-201ENST00000284637 MYO7BQ6PIF6 2116 aa13.54□□□□□ -0.24
SH3RF1-201ENST00000284637 IGHV2-26A0A0B4J1V2 119 aa13.54□□□□□ -0.24
SH3RF1-201ENST00000284637 DLX4Q92988 240 aaPredicted RBP13.54□□□□□ -0.24
SH3RF1-201ENST00000284637 GPR179Q6PRD1 2367 aa13.54□□□□□ -0.24
SH3RF1-201ENST00000284637 C9orf118A6NHY6 69 aa13.54□□□□□ -0.24
SH3RF1-201ENST00000284637 TIMM23O14925 209 aa13.54□□□□□ -0.24
SH3RF1-201ENST00000284637 IGHV4-39P01824 125 aa13.54□□□□□ -0.24
SH3RF1-201ENST00000284637 NTF4P34130 210 aa13.54□□□□□ -0.24
SH3RF1-201ENST00000284637 RPUSD1Q9UJJ7 312 aaKnown RBP13.54□□□□□ -0.24
SH3RF1-201ENST00000284637 FANCMQ8IYD8 2048 aa13.54□□□□□ -0.24
SH3RF1-201ENST00000284637 ZNF883P0CG24 379 aa13.54□□□□□ -0.24
SH3RF1-201ENST00000284637 LINC00473A8K010 186 aa13.53□□□□□ -0.24
SH3RF1-201ENST00000284637 SRRM5B3KS81 715 aa13.53□□□□□ -0.24
SH3RF1-201ENST00000284637 CCL25O15444 150 aa13.53□□□□□ -0.24
SH3RF1-201ENST00000284637 TMEM101Q96IK0 257 aa13.53□□□□□ -0.24
SH3RF1-201ENST00000284637 SLC50A1Q9BRV3 221 aa13.53□□□□□ -0.24
SH3RF1-201ENST00000284637 TRAV12-3A0A0B4J271 114 aa13.53□□□□□ -0.24
SH3RF1-201ENST00000284637 RHOGP84095 191 aa13.53□□□□□ -0.24
SH3RF1-201ENST00000284637 ZNF815PA8K554 130 aa13.53□□□□□ -0.24
SH3RF1-201ENST00000284637 IGHV1-46P01743 117 aa13.53□□□□□ -0.24
SH3RF1-201ENST00000284637 FHL1Q13642 323 aa13.53□□□□□ -0.24
SH3RF1-201ENST00000284637 RNASE8Q8TDE3 154 aaKnown RBP13.53□□□□□ -0.24
SH3RF1-201ENST00000284637 COL6A6A6NMZ7 2263 aa13.53□□□□□ -0.24
SH3RF1-201ENST00000284637 CITED1Q99966 193 aa13.53□□□□□ -0.24
SH3RF1-201ENST00000284637 SLC25A48Q6ZT89 311 aaKnown RBP13.52□□□□□ -0.24
SH3RF1-201ENST00000284637 RSPO3Q9BXY4 272 aaPredicted RBP13.52□□□□□ -0.24
SH3RF1-201ENST00000284637 D6R8Y8 96 aa13.52□□□□□ -0.24
SH3RF1-201ENST00000284637 MLNRO43193 412 aa13.52□□□□□ -0.24
SH3RF1-201ENST00000284637 CSRP2Q16527 193 aa13.52□□□□□ -0.24
SH3RF1-201ENST00000284637 RPRMLQ8N4K4 120 aa13.52□□□□□ -0.24
SH3RF1-201ENST00000284637 CCL19Q99731 98 aa13.52□□□□□ -0.24
SH3RF1-201ENST00000284637 SCRT1Q9BWW7 348 aa13.52□□□□□ -0.24
SH3RF1-201ENST00000284637 PI4KAP42356 2102 aa13.52□□□□□ -0.25
SH3RF1-201ENST00000284637 ZFP36L1Q07352 338 aaKnown RBP13.52□□□□□ -0.25
SH3RF1-201ENST00000284637 GTSCR1Q86UQ5 136 aa13.52□□□□□ -0.25
SH3RF1-201ENST00000284637 NEU4Q8WWR8 484 aaPredicted RBP13.52□□□□□ -0.25
SH3RF1-201ENST00000284637 CSTL1Q9H114 145 aa13.52□□□□□ -0.25
SH3RF1-201ENST00000284637 IGKV2-40A0A087WW87 121 aaPredicted RBP13.52□□□□□ -0.25
SH3RF1-201ENST00000284637 TRAV2A0A0B4J234 112 aa13.52□□□□□ -0.25
SH3RF1-201ENST00000284637 IGKV2D-40P01614 121 aaPredicted RBP13.52□□□□□ -0.25
SH3RF1-201ENST00000284637 PAX1P15863 534 aa13.52□□□□□ -0.25
SH3RF1-201ENST00000284637 CD300EQ496F6 205 aaPredicted RBP13.52□□□□□ -0.25
SH3RF1-201ENST00000284637 CD177Q8N6Q3 437 aa13.52□□□□□ -0.25
SH3RF1-201ENST00000284637 NUP35Q8NFH5 326 aa13.52□□□□□ -0.25
SH3RF1-201ENST00000284637 CACNA1BQ00975 2339 aa13.52□□□□□ -0.25
SH3RF1-201ENST00000284637 SMAD7O15105 426 aaKnown RBP13.51□□□□□ -0.25
SH3RF1-201ENST00000284637 CHTOPQ9Y3Y2 248 aaKnown RBP13.51□□□□□ -0.25
SH3RF1-201ENST00000284637 DOCK11Q5JSL3 2073 aa13.51□□□□□ -0.25
SH3RF1-201ENST00000284637 TRBV7-9A0A0J9YWB2 115 aa13.51□□□□□ -0.25
SH3RF1-201ENST00000284637 IGLL1P15814 213 aa13.51□□□□□ -0.25
SH3RF1-201ENST00000284637 ZNF138P52744 262 aa13.51□□□□□ -0.25
SH3RF1-201ENST00000284637 PLAURQ03405 335 aa13.51□□□□□ -0.25
SH3RF1-201ENST00000284637 TMEM42Q69YG0 159 aa13.51□□□□□ -0.25
SH3RF1-201ENST00000284637 SSBP2P81877 361 aaPredicted RBP13.51□□□□□ -0.25
SH3RF1-201ENST00000284637 MCRIP2Q9BUT9 160 aaKnown RBP13.51□□□□□ -0.25
SH3RF1-201ENST00000284637 K7EP34 96 aa13.51□□□□□ -0.25
SH3RF1-201ENST00000284637 C18orf32Q8TCD1 76 aa13.51□□□□□ -0.25
SH3RF1-201ENST00000284637 LINC01587Q99440 93 aa13.51□□□□□ -0.25
SH3RF1-201ENST00000284637 LSM4Q9Y4Z0 139 aaKnown RBP13.51□□□□□ -0.25
SH3RF1-201ENST00000284637 IFI27P40305 119 aaPredicted RBP13.5□□□□□ -0.25
SH3RF1-201ENST00000284637 WFDC12Q8WWY7 111 aa13.5□□□□□ -0.25
SH3RF1-201ENST00000284637 ANK1P16157 1881 aa13.5□□□□□ -0.25
SH3RF1-201ENST00000284637 IGHV2-70DA0A0C4DH43 119 aa13.5□□□□□ -0.25
SH3RF1-201ENST00000284637 PRTN3P24158 256 aa13.5□□□□□ -0.25
SH3RF1-201ENST00000284637 HEATR1Q9H583 2144 aaKnown RBP13.5□□□□□ -0.25
SH3RF1-201ENST00000284637 AZU1P20160 251 aa13.5□□□□□ -0.25
SH3RF1-201ENST00000284637 C20orf204Q6ZNR8 217 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 89.7 ms