RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 LYNX1P0DP58 116 aa13.25□□□□□ -0.29
CTCF-201ENST00000264010 PLA2G5P39877 138 aa13.25□□□□□ -0.29
CTCF-201ENST00000264010 ARF6P62330 175 aa13.25□□□□□ -0.29
CTCF-201ENST00000264010 FAM71F2Q6NXP2 309 aa13.25□□□□□ -0.29
CTCF-201ENST00000264010 JKAMPQ9P055 326 aa13.25□□□□□ -0.29
CTCF-201ENST00000264010 MSRB2Q9Y3D2 182 aa13.25□□□□□ -0.29
CTCF-201ENST00000264010 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.24□□□□□ -0.29
CTCF-201ENST00000264010 CORTO00230 105 aa13.24□□□□□ -0.29
CTCF-201ENST00000264010 C22orf34Q6ZV56 151 aa13.24□□□□□ -0.29
CTCF-201ENST00000264010 TNFRSF14Q92956 283 aa13.24□□□□□ -0.29
CTCF-201ENST00000264010 LIPFP07098 398 aa13.24□□□□□ -0.29
CTCF-201ENST00000264010 SPATA31B1PQ5VZV4 182 aa13.24□□□□□ -0.29
CTCF-201ENST00000264010 Q6ZWC4 215 aa13.24□□□□□ -0.29
CTCF-201ENST00000264010 ZNF418Q8TF45 676 aaPredicted RBP13.24□□□□□ -0.29
CTCF-201ENST00000264010 SEPSECSQ9HD40 501 aaKnown RBP13.24□□□□□ -0.29
CTCF-201ENST00000264010 TNFRSF19Q9NS68 423 aa13.24□□□□□ -0.29
CTCF-201ENST00000264010 IGHV3-48P01763 117 aa13.24□□□□□ -0.29
CTCF-201ENST00000264010 MAS1LP35410 378 aa13.24□□□□□ -0.29
CTCF-201ENST00000264010 RBP4P02753 201 aa13.23□□□□□ -0.29
CTCF-201ENST00000264010 ANKRD39Q53RE8 183 aa13.23□□□□□ -0.29
CTCF-201ENST00000264010 CSTL1Q9H114 145 aa13.23□□□□□ -0.29
CTCF-201ENST00000264010 TRAV9-2A0A087WT02 112 aa13.23□□□□□ -0.29
CTCF-201ENST00000264010 SLC25A5P05141 298 aaKnown RBP13.23□□□□□ -0.29
CTCF-201ENST00000264010 CSN1S1P47710 185 aa13.23□□□□□ -0.29
CTCF-201ENST00000264010 TTC32Q5I0X7 151 aa13.23□□□□□ -0.29
CTCF-201ENST00000264010 LINC01551Q86U37 167 aa13.23□□□□□ -0.29
CTCF-201ENST00000264010 CLUHP3Q96NS8 147 aa13.23□□□□□ -0.29
CTCF-201ENST00000264010 SMG1Q96Q15 3661 aaKnown RBP13.23□□□□□ -0.29
CTCF-201ENST00000264010 TNRC18O15417 2968 aaPredicted RBP13.23□□□□□ -0.29
CTCF-201ENST00000264010 H7C2G1 150 aa13.23□□□□□ -0.29
CTCF-201ENST00000264010 ZNF324O75467 553 aaPredicted RBP13.23□□□□□ -0.29
CTCF-201ENST00000264010 RNASE2P10153 161 aaKnown RBP13.23□□□□□ -0.29
CTCF-201ENST00000264010 PNKDQ8N490 385 aa13.23□□□□□ -0.29
CTCF-201ENST00000264010 Q8NA96 180 aa13.23□□□□□ -0.29
CTCF-201ENST00000264010 OR5AN1Q8NGI8 311 aa13.23□□□□□ -0.29
CTCF-201ENST00000264010 RNASE7Q9H1E1 156 aaKnown RBP13.23□□□□□ -0.29
CTCF-201ENST00000264010 ZNF355PQ9NSJ1 428 aa13.23□□□□□ -0.29
CTCF-201ENST00000264010 HLA-DRB1P01911 266 aa13.22□□□□□ -0.29
CTCF-201ENST00000264010 FBXL7Q9UJT9 491 aa13.22□□□□□ -0.29
CTCF-201ENST00000264010 HLA-DQA1P01909 254 aa13.22□□□□□ -0.29
CTCF-201ENST00000264010 TMEM249Q2WGJ8 235 aa13.22□□□□□ -0.29
CTCF-201ENST00000264010 IGHV3-21A0A0B4J1V1 117 aa13.22□□□□□ -0.29
CTCF-201ENST00000264010 A0A1W2PRD5 423 aa13.22□□□□□ -0.29
CTCF-201ENST00000264010 A0A1W2PRF3 423 aa13.22□□□□□ -0.29
CTCF-201ENST00000264010 A0A1W2PRM7 423 aa13.22□□□□□ -0.29
CTCF-201ENST00000264010 GPR183P32249 361 aa13.22□□□□□ -0.29
CTCF-201ENST00000264010 RAB9AP51151 201 aa13.22□□□□□ -0.29
CTCF-201ENST00000264010 TMEM155Q4W5P6 130 aa13.22□□□□□ -0.29
CTCF-201ENST00000264010 C10orf55Q5SWW7 151 aa13.22□□□□□ -0.29
CTCF-201ENST00000264010 ANAPC13Q9BS18 74 aa13.22□□□□□ -0.29
CTCF-201ENST00000264010 ABCA4P78363 2273 aa13.22□□□□□ -0.29
CTCF-201ENST00000264010 SRRM4A7MD48 611 aaKnown RBP13.21□□□□□ -0.29
CTCF-201ENST00000264010 MT-ND6P03923 174 aa13.21□□□□□ -0.29
CTCF-201ENST00000264010 LOXP28300 417 aaPredicted RBP13.21□□□□□ -0.29
CTCF-201ENST00000264010 PSG9Q00887 426 aa13.21□□□□□ -0.29
CTCF-201ENST00000264010 C16orf54Q6UWD8 224 aa13.21□□□□□ -0.29
CTCF-201ENST00000264010 TEX45Q8NA69 505 aa13.21□□□□□ -0.29
CTCF-201ENST00000264010 C20orf144Q9BQM9 153 aa13.21□□□□□ -0.29
CTCF-201ENST00000264010 UBTD1Q9HAC8 227 aa13.21□□□□□ -0.29
CTCF-201ENST00000264010 CDC42EP3Q9UKI2 254 aa13.21□□□□□ -0.29
CTCF-201ENST00000264010 PLAUP00749 431 aa13.21□□□□□ -0.29
CTCF-201ENST00000264010 LINC00311Q8N616 119 aa13.21□□□□□ -0.29
CTCF-201ENST00000264010 NUPR1O60356 82 aa13.21□□□□□ -0.3
CTCF-201ENST00000264010 LYZP61626 148 aa13.21□□□□□ -0.3
CTCF-201ENST00000264010 PAX2Q02962 417 aa13.21□□□□□ -0.3
CTCF-201ENST00000264010 DNLZQ5SXM8 178 aa13.21□□□□□ -0.3
CTCF-201ENST00000264010 PET117Q6UWS5 81 aa13.21□□□□□ -0.3
CTCF-201ENST00000264010 PRB4P10163 310 aaPredicted RBP13.2□□□□□ -0.3
CTCF-201ENST00000264010 ANXA2RQ3ZCQ2 193 aa13.2□□□□□ -0.3
CTCF-201ENST00000264010 CENPWQ5EE01 88 aa13.2□□□□□ -0.3
CTCF-201ENST00000264010 LOC105371242A0A075B767 164 aa13.2□□□□□ -0.3
CTCF-201ENST00000264010 SCGB1D4Q6XE38 83 aa13.2□□□□□ -0.3
CTCF-201ENST00000264010 KAAG1Q9UBP8 84 aa13.2□□□□□ -0.3
CTCF-201ENST00000264010 SHISA9B4DS77 424 aa13.2□□□□□ -0.3
CTCF-201ENST00000264010 IGLC2P0DOY2 106 aa13.2□□□□□ -0.3
CTCF-201ENST00000264010 IGLC3P0DOY3 106 aa13.2□□□□□ -0.3
CTCF-201ENST00000264010 ESDP10768 282 aa13.2□□□□□ -0.3
CTCF-201ENST00000264010 COX19Q49B96 90 aa13.2□□□□□ -0.3
CTCF-201ENST00000264010 TMEM97Q5BJF2 176 aa13.2□□□□□ -0.3
CTCF-201ENST00000264010 OCC1Q8TAD7 63 aa13.2□□□□□ -0.3
CTCF-201ENST00000264010 NCBP2LA6PVI3 153 aaKnown RBP13.2□□□□□ -0.3
CTCF-201ENST00000264010 FOXH1O75593 365 aa13.2□□□□□ -0.3
CTCF-201ENST00000264010 PFN1P07737 140 aaKnown RBP13.2□□□□□ -0.3
CTCF-201ENST00000264010 ZNF672Q499Z4 452 aaPredicted RBP13.2□□□□□ -0.3
CTCF-201ENST00000264010 FER1L6-AS1Q8NA97 138 aa13.2□□□□□ -0.3
CTCF-201ENST00000264010 LINC00574Q9H8X3 128 aa13.2□□□□□ -0.3
CTCF-201ENST00000264010 IGHV2-26A0A0B4J1V2 119 aa13.19□□□□□ -0.3
CTCF-201ENST00000264010 NDUFA4L2Q9NRX3 87 aa13.19□□□□□ -0.3
CTCF-201ENST00000264010 SRSF9Q13242 221 aaKnown RBP eCLIP13.19□□□□□ -0.3
CTCF-201ENST00000264010 UTF1Q5T230 341 aa13.19□□□□□ -0.3
CTCF-201ENST00000264010 RASL11BQ9BPW5 248 aa13.19□□□□□ -0.3
CTCF-201ENST00000264010 SPENQ96T58 3664 aaKnown RBP13.19□□□□□ -0.3
CTCF-201ENST00000264010 A0A1B0GW15 77 aa13.19□□□□□ -0.3
CTCF-201ENST00000264010 RPL7P18124 248 aaKnown RBP13.19□□□□□ -0.3
CTCF-201ENST00000264010 AZU1P20160 251 aa13.19□□□□□ -0.3
CTCF-201ENST00000264010 PSMB2P49721 201 aa13.19□□□□□ -0.3
CTCF-201ENST00000264010 MLANAQ16655 118 aa13.19□□□□□ -0.3
CTCF-201ENST00000264010 PRB3Q04118 309 aaPredicted RBP13.18□□□□□ -0.3
CTCF-201ENST00000264010 C18orf15Q96N68 181 aa13.18□□□□□ -0.3
CTCF-201ENST00000264010 FBXL15Q9H469 300 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms