RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 ZNF138P52744 262 aa15.72■□□□□ 0.11
UPF1-201ENST00000262803 REG4Q9BYZ8 158 aa15.72■□□□□ 0.11
UPF1-201ENST00000262803 TMEM238C9JI98 176 aa15.71■□□□□ 0.11
UPF1-201ENST00000262803 C1QL4Q86Z23 238 aa15.71■□□□□ 0.11
UPF1-201ENST00000262803 RASL10AQ92737 203 aa15.71■□□□□ 0.11
UPF1-201ENST00000262803 C11orf68Q9H3H3 251 aaKnown RBP15.71■□□□□ 0.11
UPF1-201ENST00000262803 A0A1B0GW64 132 aa15.71■□□□□ 0.11
UPF1-201ENST00000262803 QRFPP83859 136 aa15.71■□□□□ 0.11
UPF1-201ENST00000262803 Q6ZS49 121 aa15.71■□□□□ 0.11
UPF1-201ENST00000262803 TRAV16A0A0A6YYK6 109 aaPredicted RBP15.71■□□□□ 0.11
UPF1-201ENST00000262803 NDUFAF3Q9BU61 184 aa15.71■□□□□ 0.11
UPF1-201ENST00000262803 SLC25A39Q9BZJ4 359 aaPredicted RBP15.71■□□□□ 0.11
UPF1-201ENST00000262803 IGKCP01834 107 aa15.71■□□□□ 0.1
UPF1-201ENST00000262803 CD24P25063 80 aa15.71■□□□□ 0.1
UPF1-201ENST00000262803 CKS1BP61024 79 aa15.71■□□□□ 0.1
UPF1-201ENST00000262803 TRBV24-1A0A075B6N3 115 aa15.7■□□□□ 0.1
UPF1-201ENST00000262803 RFNGQ9Y644 331 aa15.7■□□□□ 0.1
UPF1-201ENST00000262803 SIP14410 1827 aa15.7■□□□□ 0.1
UPF1-201ENST00000262803 A0A0G2JNJ9 132 aa15.7■□□□□ 0.1
UPF1-201ENST00000262803 LYNX1G3V0Z9 82 aa15.7■□□□□ 0.1
UPF1-201ENST00000262803 LYNX1P0DP58 116 aa15.7■□□□□ 0.1
UPF1-201ENST00000262803 LAGE3Q14657 143 aa15.7■□□□□ 0.1
UPF1-201ENST00000262803 GLMPQ8WWB7 406 aa15.7■□□□□ 0.1
UPF1-201ENST00000262803 GGTLC1Q9BX51 225 aa15.7■□□□□ 0.1
UPF1-201ENST00000262803 Q9UFV3 132 aa15.7■□□□□ 0.1
UPF1-201ENST00000262803 SPCS1Q9Y6A9 102 aa15.7■□□□□ 0.1
UPF1-201ENST00000262803 CXCL1P09341 107 aa15.7■□□□□ 0.1
UPF1-201ENST00000262803 SELLP14151 372 aa15.7■□□□□ 0.1
UPF1-201ENST00000262803 PAX2Q02962 417 aa15.7■□□□□ 0.1
UPF1-201ENST00000262803 IGKV1-5P01602 117 aa15.7■□□□□ 0.1
UPF1-201ENST00000262803 OR10W1Q8NGF6 305 aa15.7■□□□□ 0.1
UPF1-201ENST00000262803 ABCA1O95477 2261 aa15.69■□□□□ 0.1
UPF1-201ENST00000262803 GPR179Q6PRD1 2367 aa15.69■□□□□ 0.1
UPF1-201ENST00000262803 BUB1B-PAK6H3BSN5 160 aa15.69■□□□□ 0.1
UPF1-201ENST00000262803 MS4A6AQ9H2W1 248 aa15.69■□□□□ 0.1
UPF1-201ENST00000262803 APOMO95445 188 aa15.69■□□□□ 0.1
UPF1-201ENST00000262803 S100A7L2Q5SY68 101 aa15.69■□□□□ 0.1
UPF1-201ENST00000262803 LINC00469Q8N7U9 141 aa15.69■□□□□ 0.1
UPF1-201ENST00000262803 H3BUX3 64 aa15.69■□□□□ 0.1
UPF1-201ENST00000262803 SRD5A1P18405 259 aa15.69■□□□□ 0.1
UPF1-201ENST00000262803 OR5A1Q8NGJ0 315 aa15.69■□□□□ 0.1
UPF1-201ENST00000262803 HIST1H2BLQ99880 126 aa15.69■□□□□ 0.1
UPF1-201ENST00000262803 SBF1O95248 1867 aa15.69■□□□□ 0.1
UPF1-201ENST00000262803 CACNA1GO43497 2377 aa15.69■□□□□ 0.1
UPF1-201ENST00000262803 GGTLC3B5MD39 225 aa15.69■□□□□ 0.1
UPF1-201ENST00000262803 ARTNQ5T4W7 220 aa15.69■□□□□ 0.1
UPF1-201ENST00000262803 DMRTA1Q5VZB9 504 aa15.69■□□□□ 0.1
UPF1-201ENST00000262803 HAPLN4Q86UW8 402 aa15.69■□□□□ 0.1
UPF1-201ENST00000262803 RPP25LQ8N5L8 163 aaKnown RBP15.69■□□□□ 0.1
UPF1-201ENST00000262803 C5orf24Q7Z6I8 188 aa15.68■□□□□ 0.1
UPF1-201ENST00000262803 GAFA1Q96PS6 74 aa15.68■□□□□ 0.1
UPF1-201ENST00000262803 H0YJW9 148 aa15.68■□□□□ 0.1
UPF1-201ENST00000262803 TOMM40O96008 361 aa15.68■□□□□ 0.1
UPF1-201ENST00000262803 FOXL2NBQ6ZUU3 175 aa15.68■□□□□ 0.1
UPF1-201ENST00000262803 LAMTOR2Q9Y2Q5 125 aa15.68■□□□□ 0.1
UPF1-201ENST00000262803 HGFACQ04756 655 aa15.68■□□□□ 0.1
UPF1-201ENST00000262803 GLRX5Q86SX6 157 aa15.68■□□□□ 0.1
UPF1-201ENST00000262803 DPH3P1Q9H4G8 78 aa15.68■□□□□ 0.1
UPF1-201ENST00000262803 TRAV9-2A0A087WT02 112 aa15.68■□□□□ 0.1
UPF1-201ENST00000262803 TNFSF13O75888 250 aa15.68■□□□□ 0.1
UPF1-201ENST00000262803 NIT1Q86X76 327 aa15.67■□□□□ 0.1
UPF1-201ENST00000262803 Q0VFX4 171 aa15.67■□□□□ 0.1
UPF1-201ENST00000262803 NBASA2RRP1 2371 aa15.67■□□□□ 0.1
UPF1-201ENST00000262803 C10orf55Q5SWW7 151 aa15.67■□□□□ 0.1
UPF1-201ENST00000262803 VCYO14598 125 aa15.67■□□□□ 0.1
UPF1-201ENST00000262803 MLNRO43193 412 aa15.67■□□□□ 0.1
UPF1-201ENST00000262803 PRTN3P24158 256 aa15.67■□□□□ 0.1
UPF1-201ENST00000262803 FHL1Q13642 323 aa15.67■□□□□ 0.1
UPF1-201ENST00000262803 ATXN8Q156A1 80 aa15.67■□□□□ 0.1
UPF1-201ENST00000262803 PIP4P2Q8N4L2 257 aa15.67■□□□□ 0.1
UPF1-201ENST00000262803 NCOR1P1Q9H4R4 102 aa15.67■□□□□ 0.1
UPF1-201ENST00000262803 CA1P00915 261 aaPredicted RBP15.66■□□□□ 0.1
UPF1-201ENST00000262803 KIAA2026Q5HYC2 2103 aa15.66■□□□□ 0.1
UPF1-201ENST00000262803 TRAV5A0A0B4J249 113 aa15.66■□□□□ 0.1
UPF1-201ENST00000262803 A0A1B0GV72 72 aa15.66■□□□□ 0.1
UPF1-201ENST00000262803 TMEM14EPQ6UXP3 125 aa15.66■□□□□ 0.1
UPF1-201ENST00000262803 PSG1P11464 419 aa15.66■□□□□ 0.1
UPF1-201ENST00000262803 J3QLI3 93 aa15.66■□□□□ 0.1
UPF1-201ENST00000262803 HOXA3O43365 443 aaPredicted RBP15.66■□□□□ 0.1
UPF1-201ENST00000262803 PCP4P48539 62 aa15.66■□□□□ 0.1
UPF1-201ENST00000262803 TDGF1P3P51864 188 aa15.66■□□□□ 0.1
UPF1-201ENST00000262803 HIST3H2BBQ8N257 126 aa15.66■□□□□ 0.1
UPF1-201ENST00000262803 IFI27L1Q96BM0 104 aa15.66■□□□□ 0.1
UPF1-201ENST00000262803 ZNF581Q9P0T4 197 aa15.66■□□□□ 0.1
UPF1-201ENST00000262803 CDK2AP2O75956 126 aa15.65■□□□□ 0.1
UPF1-201ENST00000262803 CD177Q8N6Q3 437 aa15.65■□□□□ 0.1
UPF1-201ENST00000262803 MCRIP2Q9BUT9 160 aaKnown RBP15.65■□□□□ 0.1
UPF1-201ENST00000262803 VWA8A3KMH1 1905 aa15.65■□□□□ 0.1
UPF1-201ENST00000262803 GFI1BQ5VTD9 330 aa15.65■□□□□ 0.1
UPF1-201ENST00000262803 PHF3Q92576 2039 aaKnown RBP15.65■□□□□ 0.1
UPF1-201ENST00000262803 SRSF4Q08170 494 aaKnown RBP15.65■□□□□ 0.1
UPF1-201ENST00000262803 PDE6HQ13956 83 aa15.65■□□□□ 0.1
UPF1-201ENST00000262803 SPATA31B1PQ5VZV4 182 aa15.64■□□□□ 0.1
UPF1-201ENST00000262803 TEX43Q6ZNM6 134 aa15.64■□□□□ 0.09
UPF1-201ENST00000262803 TCRAP04437 139 aa15.64■□□□□ 0.09
UPF1-201ENST00000262803 LINC00158P58513 81 aa15.64■□□□□ 0.09
UPF1-201ENST00000262803 HSD52Q0P140 79 aa15.64■□□□□ 0.09
UPF1-201ENST00000262803 FOXL1Q12952 345 aa15.64■□□□□ 0.09
UPF1-201ENST00000262803 JPT2Q9H910 190 aa15.64■□□□□ 0.09
UPF1-201ENST00000262803 THADAQ6YHU6 1953 aa15.64■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 78.1 ms