RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 HLA-DQA1P01909 254 aa8.09□□□□□ -1.11
LIG3-201ENST00000262327 MT-ND6P03923 174 aa8.09□□□□□ -1.11
LIG3-201ENST00000262327 RHOGP84095 191 aa8.09□□□□□ -1.11
LIG3-201ENST00000262327 ZNF329Q86UD4 541 aa8.09□□□□□ -1.11
LIG3-201ENST00000262327 OR5B3Q8NH48 314 aa8.09□□□□□ -1.11
LIG3-201ENST00000262327 ST6GALNAC6Q969X2 333 aa8.09□□□□□ -1.11
LIG3-201ENST00000262327 BORCS7Q96B45 105 aa8.09□□□□□ -1.11
LIG3-201ENST00000262327 PIEZO1Q92508 2521 aa8.09□□□□□ -1.11
LIG3-201ENST00000262327 HSBP1O75506 76 aa8.09□□□□□ -1.12
LIG3-201ENST00000262327 SLC25A5P05141 298 aaKnown RBP8.09□□□□□ -1.12
LIG3-201ENST00000262327 CNTFRP26992 372 aa8.09□□□□□ -1.12
LIG3-201ENST00000262327 ZNF137PP52743 207 aa8.09□□□□□ -1.12
LIG3-201ENST00000262327 OR10J3Q5JRS4 329 aa8.09□□□□□ -1.12
LIG3-201ENST00000262327 LINC00322Q6ZN03 302 aaPredicted RBP8.09□□□□□ -1.12
LIG3-201ENST00000262327 IGKV1D-37A0A075B6S9 117 aa8.08□□□□□ -1.12
LIG3-201ENST00000262327 PGPA6NDG6 321 aa8.08□□□□□ -1.12
LIG3-201ENST00000262327 PRR30Q53SZ7 412 aaPredicted RBP8.08□□□□□ -1.12
LIG3-201ENST00000262327 IGFBPL1Q8WX77 278 aa8.08□□□□□ -1.12
LIG3-201ENST00000262327 ZNF714Q96N38 554 aa8.08□□□□□ -1.12
LIG3-201ENST00000262327 MCRIP2Q9BUT9 160 aaKnown RBP8.08□□□□□ -1.12
LIG3-201ENST00000262327 RAB9BQ9NP90 201 aa8.08□□□□□ -1.12
LIG3-201ENST00000262327 PTPRQQ9UMZ3 2332 aa8.08□□□□□ -1.12
LIG3-201ENST00000262327 DCHS2Q6V1P9 2916 aa8.08□□□□□ -1.12
LIG3-201ENST00000262327 M0R2Z0 102 aa8.08□□□□□ -1.12
LIG3-201ENST00000262327 GATA4P43694 442 aa8.08□□□□□ -1.12
LIG3-201ENST00000262327 LGALS7P47929 136 aa8.08□□□□□ -1.12
LIG3-201ENST00000262327 RPS20P60866 119 aaKnown RBP8.08□□□□□ -1.12
LIG3-201ENST00000262327 ARF6P62330 175 aa8.08□□□□□ -1.12
LIG3-201ENST00000262327 FAM169BQ8N8A8 192 aa8.08□□□□□ -1.12
LIG3-201ENST00000262327 CACNA1BQ00975 2339 aa8.07□□□□□ -1.12
LIG3-201ENST00000262327 TRAV8-1A0A0A6YYK1 113 aa8.07□□□□□ -1.12
LIG3-201ENST00000262327 A0A1W2PPI3 338 aa8.07□□□□□ -1.12
LIG3-201ENST00000262327 PRRX1P54821 245 aa8.07□□□□□ -1.12
LIG3-201ENST00000262327 UBE2G1P62253 170 aa8.07□□□□□ -1.12
LIG3-201ENST00000262327 EBLN2Q6P2I7 272 aa8.07□□□□□ -1.12
LIG3-201ENST00000262327 ZNF833PQ6ZTB9 187 aa8.07□□□□□ -1.12
LIG3-201ENST00000262327 SPATA12Q7Z6I5 190 aa8.07□□□□□ -1.12
LIG3-201ENST00000262327 FXYD5Q96DB9 178 aa8.07□□□□□ -1.12
LIG3-201ENST00000262327 LINC00312Q9Y6C7 94 aa8.07□□□□□ -1.12
LIG3-201ENST00000262327 ASH1LQ9NR48 2969 aaKnown RBP8.07□□□□□ -1.12
LIG3-201ENST00000262327 H0Y8G0 127 aa8.07□□□□□ -1.12
LIG3-201ENST00000262327 GNG7O60262 68 aa8.07□□□□□ -1.12
LIG3-201ENST00000262327 TSPOP30536 169 aa8.07□□□□□ -1.12
LIG3-201ENST00000262327 OSR1Q8TAX0 266 aaPredicted RBP8.07□□□□□ -1.12
LIG3-201ENST00000262327 CEP295Q9C0D2 2601 aa8.07□□□□□ -1.12
LIG3-201ENST00000262327 FNDC10F2Z333 226 aa8.06□□□□□ -1.12
LIG3-201ENST00000262327 ZNF138P52744 262 aa8.06□□□□□ -1.12
LIG3-201ENST00000262327 LINC00173Q6ZV60 143 aa8.06□□□□□ -1.12
LIG3-201ENST00000262327 PGLYRP4Q96LB8 373 aa8.06□□□□□ -1.12
LIG3-201ENST00000262327 VKORC1Q9BQB6 163 aa8.06□□□□□ -1.12
LIG3-201ENST00000262327 TCRBV4S1A1TA0A5B7 111 aa8.06□□□□□ -1.12
LIG3-201ENST00000262327 GAGE12BA1L429 117 aa8.06□□□□□ -1.12
LIG3-201ENST00000262327 SCGB2A2Q13296 93 aa8.06□□□□□ -1.12
LIG3-201ENST00000262327 C3orf36Q3SXR2 165 aa8.06□□□□□ -1.12
LIG3-201ENST00000262327 SAMD13Q5VXD3 122 aa8.06□□□□□ -1.12
LIG3-201ENST00000262327 PDPNQ86YL7 162 aa8.06□□□□□ -1.12
LIG3-201ENST00000262327 TNFRSF19Q9NS68 423 aa8.06□□□□□ -1.12
LIG3-201ENST00000262327 A0A0G2JNJ9 132 aa8.06□□□□□ -1.12
LIG3-201ENST00000262327 ADIPOQQ15848 244 aa8.06□□□□□ -1.12
LIG3-201ENST00000262327 OR5AN1Q8NGI8 311 aa8.06□□□□□ -1.12
LIG3-201ENST00000262327 OR4C13Q8NGP0 309 aa8.06□□□□□ -1.12
LIG3-201ENST00000262327 TMEM186Q96B77 213 aa8.06□□□□□ -1.12
LIG3-201ENST00000262327 MRPL32Q9BYC8 188 aaKnown RBP8.06□□□□□ -1.12
LIG3-201ENST00000262327 Q9UFV3 132 aa8.06□□□□□ -1.12
LIG3-201ENST00000262327 SPTBN4Q9H254 2564 aa8.05□□□□□ -1.12
LIG3-201ENST00000262327 ARHGAP32A7KAX9 2087 aa8.05□□□□□ -1.12
LIG3-201ENST00000262327 IGHV1-69-2A0A0G2JMI3 117 aa8.05□□□□□ -1.12
LIG3-201ENST00000262327 BSPH1Q075Z2 132 aa8.05□□□□□ -1.12
LIG3-201ENST00000262327 AMMECR1LQ6DCA0 310 aa8.05□□□□□ -1.12
LIG3-201ENST00000262327 CACNG8Q8WXS5 425 aa8.05□□□□□ -1.12
LIG3-201ENST00000262327 MBD6Q96DN6 1003 aa8.05□□□□□ -1.12
LIG3-201ENST00000262327 OR8B2Q96RD0 313 aa8.05□□□□□ -1.12
LIG3-201ENST00000262327 CTSZQ9UBR2 303 aa8.05□□□□□ -1.12
LIG3-201ENST00000262327 ARL2-SNX15V9GYD0 113 aa8.05□□□□□ -1.12
LIG3-201ENST00000262327 WNK2Q9Y3S1 2297 aa8.05□□□□□ -1.12
LIG3-201ENST00000262327 TLN1Q9Y490 2541 aaKnown RBP8.05□□□□□ -1.12
LIG3-201ENST00000262327 IGLC7A0M8Q6 106 aa8.05□□□□□ -1.12
LIG3-201ENST00000262327 FAM181BA6NEQ2 426 aa8.05□□□□□ -1.12
LIG3-201ENST00000262327 OR2T8A6NH00 312 aa8.05□□□□□ -1.12
LIG3-201ENST00000262327 LYNX1G3V0Z9 82 aa8.05□□□□□ -1.12
LIG3-201ENST00000262327 IGLV2-23P01705 113 aa8.05□□□□□ -1.12
LIG3-201ENST00000262327 LYNX1P0DP58 116 aa8.05□□□□□ -1.12
LIG3-201ENST00000262327 PNKDQ8N490 385 aa8.05□□□□□ -1.12
LIG3-201ENST00000262327 GRAMD2BQ96HH9 432 aa8.05□□□□□ -1.12
LIG3-201ENST00000262327 C19orf24Q9BVV8 132 aa8.05□□□□□ -1.12
LIG3-201ENST00000262327 JKAMPQ9P055 326 aa8.05□□□□□ -1.12
LIG3-201ENST00000262327 EPDR1Q9UM22 224 aa8.05□□□□□ -1.12
LIG3-201ENST00000262327 MRPS16Q9Y3D3 137 aaKnown RBP8.05□□□□□ -1.12
LIG3-201ENST00000262327 PPIAL4EA0A075B759 164 aa8.04□□□□□ -1.12
LIG3-201ENST00000262327 SERTM2A0A1B0GWG4 89 aa8.04□□□□□ -1.12
LIG3-201ENST00000262327 C17orf100A8MU93 164 aa8.04□□□□□ -1.12
LIG3-201ENST00000262327 PPIAL4DF5H284 164 aa8.04□□□□□ -1.12
LIG3-201ENST00000262327 FSTL3O95633 263 aa8.04□□□□□ -1.12
LIG3-201ENST00000262327 PPIAL4FP0DN26 164 aa8.04□□□□□ -1.12
LIG3-201ENST00000262327 TMEM177Q53S58 311 aa8.04□□□□□ -1.12
LIG3-201ENST00000262327 TEX36Q5VZQ5 186 aa8.04□□□□□ -1.12
LIG3-201ENST00000262327 SSX8Q7RTT4 187 aa8.04□□□□□ -1.12
LIG3-201ENST00000262327 OR1L4Q8NGR5 311 aa8.04□□□□□ -1.12
LIG3-201ENST00000262327 TMEM167AQ8TBQ9 72 aa8.04□□□□□ -1.12
LIG3-201ENST00000262327 A0A1W2PRD5 423 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms