RNA–Protein interactions for RNA: ENST00000238497.9

VPS4B-201, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4B, Length 3,324 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-201ENST00000238497 RPL29P47914 159 aaKnown RBP6.86□□□□□ -1.31
VPS4B-201ENST00000238497 TMEM177Q53S58 311 aa6.86□□□□□ -1.31
VPS4B-201ENST00000238497 CENPWQ5EE01 88 aa6.86□□□□□ -1.31
VPS4B-201ENST00000238497 LDLRAD2Q5SZI1 272 aa6.86□□□□□ -1.31
VPS4B-201ENST00000238497 LINC01551Q86U37 167 aa6.86□□□□□ -1.31
VPS4B-201ENST00000238497 TMEM167AQ8TBQ9 72 aa6.86□□□□□ -1.31
VPS4B-201ENST00000238497 MS4A10Q96PG2 267 aa6.86□□□□□ -1.31
VPS4B-201ENST00000238497 TPPP3Q9BW30 176 aa6.86□□□□□ -1.31
VPS4B-201ENST00000238497 TUBA4BQ9H853 241 aa6.86□□□□□ -1.31
VPS4B-201ENST00000238497 SORL1Q92673 2214 aa6.86□□□□□ -1.31
VPS4B-201ENST00000238497 PGPA6NDG6 321 aa6.85□□□□□ -1.31
VPS4B-201ENST00000238497 C5orf52A6NGY3 159 aa6.85□□□□□ -1.31
VPS4B-201ENST00000238497 FAM90A9PA6NNJ1 464 aa6.85□□□□□ -1.31
VPS4B-201ENST00000238497 FSTL3O95633 263 aa6.85□□□□□ -1.31
VPS4B-201ENST00000238497 FSHBP01225 129 aa6.85□□□□□ -1.31
VPS4B-201ENST00000238497 LGALS7P47929 136 aa6.85□□□□□ -1.31
VPS4B-201ENST00000238497 FOXL1Q12952 345 aa6.85□□□□□ -1.31
VPS4B-201ENST00000238497 GGACTQ9BVM4 153 aa6.85□□□□□ -1.31
VPS4B-201ENST00000238497 GNB4Q9HAV0 340 aa6.85□□□□□ -1.31
VPS4B-201ENST00000238497 ZNF257Q9Y2Q1 563 aa6.85□□□□□ -1.31
VPS4B-201ENST00000238497 LSM4Q9Y4Z0 139 aaKnown RBP6.85□□□□□ -1.31
VPS4B-201ENST00000238497 TRAPPC1Q9Y5R8 145 aa6.85□□□□□ -1.31
VPS4B-201ENST00000238497 TRBV23-1A0A0A0MS06 115 aa6.85□□□□□ -1.31
VPS4B-201ENST00000238497 IGHV3-49A0A0A0MS15 119 aa6.85□□□□□ -1.31
VPS4B-201ENST00000238497 LINC00587B1AMM8 73 aa6.85□□□□□ -1.31
VPS4B-201ENST00000238497 ITGB1BP1O14713 200 aa6.85□□□□□ -1.31
VPS4B-201ENST00000238497 IGHV4-59P01825 116 aa6.85□□□□□ -1.31
VPS4B-201ENST00000238497 TMEM11P17152 192 aa6.85□□□□□ -1.31
VPS4B-201ENST00000238497 CBLN1P23435 193 aa6.85□□□□□ -1.31
VPS4B-201ENST00000238497 IER3P46695 156 aa6.85□□□□□ -1.31
VPS4B-201ENST00000238497 ZNF124Q15973 351 aa6.85□□□□□ -1.31
VPS4B-201ENST00000238497 LY6EQ16553 131 aa6.85□□□□□ -1.31
VPS4B-201ENST00000238497 C2orf83Q53S99 150 aa6.85□□□□□ -1.31
VPS4B-201ENST00000238497 Q56UQ5 140 aa6.85□□□□□ -1.31
VPS4B-201ENST00000238497 OR8I2Q8N0Y5 310 aa6.85□□□□□ -1.31
VPS4B-201ENST00000238497 GAR1Q9NY12 217 aaKnown RBP6.85□□□□□ -1.31
VPS4B-201ENST00000238497 NOTCH1P46531 2555 aa6.85□□□□□ -1.31
VPS4B-201ENST00000238497 PRSS46E5RG02 174 aa6.84□□□□□ -1.31
VPS4B-201ENST00000238497 VWC2Q2TAL6 325 aa6.84□□□□□ -1.31
VPS4B-201ENST00000238497 CENPVQ7Z7K6 275 aaPredicted RBP6.84□□□□□ -1.31
VPS4B-201ENST00000238497 ST6GALNAC6Q969X2 333 aa6.84□□□□□ -1.31
VPS4B-201ENST00000238497 SFRP2Q96HF1 295 aa6.84□□□□□ -1.31
VPS4B-201ENST00000238497 SIRPDQ9H106 197 aa6.84□□□□□ -1.31
VPS4B-201ENST00000238497 IGHV3-66A0A0C4DH42 116 aa6.84□□□□□ -1.31
VPS4B-201ENST00000238497 TNFRSF13BO14836 293 aaPredicted RBP6.84□□□□□ -1.31
VPS4B-201ENST00000238497 IGLV2-23P01705 113 aa6.84□□□□□ -1.31
VPS4B-201ENST00000238497 FRMD6-AS1P0C7T7 363 aa6.84□□□□□ -1.31
VPS4B-201ENST00000238497 CD33P20138 364 aa6.84□□□□□ -1.31
VPS4B-201ENST00000238497 TMEM219Q86XT9 240 aa6.84□□□□□ -1.31
VPS4B-201ENST00000238497 RASL11BQ9BPW5 248 aa6.84□□□□□ -1.31
VPS4B-201ENST00000238497 PRO1933Q9H354 126 aa6.84□□□□□ -1.31
VPS4B-201ENST00000238497 SEBOXQ9HB31 216 aaPredicted RBP6.84□□□□□ -1.31
VPS4B-201ENST00000238497 CGB1A6NKQ9 187 aa6.84□□□□□ -1.31
VPS4B-201ENST00000238497 OR2J3O76001 311 aa6.84□□□□□ -1.31
VPS4B-201ENST00000238497 LY86O95711 162 aa6.84□□□□□ -1.31
VPS4B-201ENST00000238497 CAMPP49913 170 aa6.84□□□□□ -1.31
VPS4B-201ENST00000238497 BPIFB3P59826 476 aa6.84□□□□□ -1.31
VPS4B-201ENST00000238497 UBE2G1P62253 170 aa6.84□□□□□ -1.31
VPS4B-201ENST00000238497 MRPL41Q8IXM3 137 aaKnown RBP6.84□□□□□ -1.31
VPS4B-201ENST00000238497 PARD6GQ9BYG4 376 aaPredicted RBP6.84□□□□□ -1.31
VPS4B-201ENST00000238497 OR51M1Q9H341 326 aa6.84□□□□□ -1.31
VPS4B-201ENST00000238497 A0A087WWC5 75 aa6.83□□□□□ -1.32
VPS4B-201ENST00000238497 NPFFO15130 113 aa6.83□□□□□ -1.32
VPS4B-201ENST00000238497 GNG7O60262 68 aa6.83□□□□□ -1.32
VPS4B-201ENST00000238497 SAA4P35542 130 aa6.83□□□□□ -1.32
VPS4B-201ENST00000238497 MFAP2P55001 183 aa6.83□□□□□ -1.32
VPS4B-201ENST00000238497 DLX6P56179 175 aa6.83□□□□□ -1.32
VPS4B-201ENST00000238497 CDPF1Q6NVV7 123 aa6.83□□□□□ -1.32
VPS4B-201ENST00000238497 PIP4P2Q8N4L2 257 aa6.83□□□□□ -1.32
VPS4B-201ENST00000238497 NCOR1P1Q9H4R4 102 aa6.83□□□□□ -1.32
VPS4B-201ENST00000238497 TMEM167BQ9NRX6 74 aa6.83□□□□□ -1.32
VPS4B-201ENST00000238497 AMMECR1Q9Y4X0 333 aaPredicted RBP6.83□□□□□ -1.32
VPS4B-201ENST00000238497 TRAV8-1A0A0A6YYK1 113 aa6.83□□□□□ -1.32
VPS4B-201ENST00000238497 PRSS47A8MTI9 375 aa6.83□□□□□ -1.32
VPS4B-201ENST00000238497 SEC14L6B5MCN3 397 aa6.83□□□□□ -1.32
VPS4B-201ENST00000238497 GGTLC3B5MD39 225 aa6.83□□□□□ -1.32
VPS4B-201ENST00000238497 FCGR2BP31994 310 aaPredicted RBP6.83□□□□□ -1.32
VPS4B-201ENST00000238497 CEACAM3P40198 252 aa6.83□□□□□ -1.32
VPS4B-201ENST00000238497 PRR20EP86478 221 aa6.83□□□□□ -1.32
VPS4B-201ENST00000238497 PRR20CP86479 221 aa6.83□□□□□ -1.32
VPS4B-201ENST00000238497 PRR20DP86480 221 aa6.83□□□□□ -1.32
VPS4B-201ENST00000238497 PRR20BP86481 221 aa6.83□□□□□ -1.32
VPS4B-201ENST00000238497 PRR20AP86496 221 aa6.83□□□□□ -1.32
VPS4B-201ENST00000238497 FBLN7Q53RD9 439 aa6.83□□□□□ -1.32
VPS4B-201ENST00000238497 BAGE2Q86Y30 109 aa6.83□□□□□ -1.32
VPS4B-201ENST00000238497 IGKV3-7A0A075B6H7 116 aa6.83□□□□□ -1.32
VPS4B-201ENST00000238497 ZNF207O43670 478 aaKnown RBP6.83□□□□□ -1.32
VPS4B-201ENST00000238497 HYPMO75409 117 aa6.83□□□□□ -1.32
VPS4B-201ENST00000238497 IGLV1-47P01700 117 aa6.83□□□□□ -1.32
VPS4B-201ENST00000238497 RNASE1P07998 156 aaKnown RBP6.83□□□□□ -1.32
VPS4B-201ENST00000238497 PSG1P11464 419 aa6.83□□□□□ -1.32
VPS4B-201ENST00000238497 PMS2P11Q13670 270 aa6.83□□□□□ -1.32
VPS4B-201ENST00000238497 POU2AF1Q16633 256 aa6.83□□□□□ -1.32
VPS4B-201ENST00000238497 DYNAPQ8N1N2 210 aa6.83□□□□□ -1.32
VPS4B-201ENST00000238497 ARL6IP6Q8N6S5 226 aa6.83□□□□□ -1.32
VPS4B-201ENST00000238497 CTDSP1Q9GZU7 261 aa6.83□□□□□ -1.32
VPS4B-201ENST00000238497 IGLC7A0M8Q6 106 aa6.82□□□□□ -1.32
VPS4B-201ENST00000238497 TPTE2P1Q5T6R2 138 aa6.82□□□□□ -1.32
VPS4B-201ENST00000238497 IGFL4Q6B9Z1 124 aa6.82□□□□□ -1.32
VPS4B-201ENST00000238497 PFDN5Q99471 154 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms