RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 IL36RNQ9UBH0 155 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 TRAV14DV4A0A0A6YYC5 116 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 YPEL1O60688 119 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 EPPINO95925 133 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 NPC2P61916 151 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 CASC2Q6XLA1 102 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 V9GYH0 126 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 IGKV3D-11A0A0A0MRZ8 115 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 SPRY1O43609 319 aaPredicted RBP2.36□□□□□ -2.03
SCN1A-219ENST00000641575 NDUFS5O43920 106 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 NDUFB4O95168 129 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 NTN1O95631 604 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 IGKV3-11P04433 115 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 DRAM1Q8N682 238 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 HIST1H2BAQ96A08 127 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 CXCL16Q9H2A7 254 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 SLC25A37Q9NYZ2 338 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 FRRS1LQ9P0K9 344 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 FNDC1Q4ZHG4 1894 aaPredicted RBP2.36□□□□□ -2.03
SCN1A-219ENST00000641575 CPAMD8Q8IZJ3 1885 aa2.36□□□□□ -2.03
SCN1A-219ENST00000641575 A0A1W2PPZ6 126 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 MMP23AO75900 390 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 ZNF205O95201 554 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 TOMM40O96008 361 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 SNHG28P0DPA3 235 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 SSTR5P35346 364 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 RNF152Q8N8N0 203 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 OR2H1Q9GZK4 316 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 FGF20Q9NP95 211 aaPredicted RBP2.35□□□□□ -2.03
SCN1A-219ENST00000641575 KCNE1BA0A087WTH5 132 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 SNAI2O43623 268 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 PAX8Q06710 450 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 RNF125Q96EQ8 232 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 HCFC1R1Q9NWW0 138 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 U3KQE9 123 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 RFPL3SP0C7P2 107 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 PPIFP30405 207 aaKnown RBP2.35□□□□□ -2.03
SCN1A-219ENST00000641575 CA7P43166 264 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 TFPI2P48307 235 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 RPL18Q07020 188 aaKnown RBP2.35□□□□□ -2.03
SCN1A-219ENST00000641575 ZNF645Q8N7E2 425 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 MRPL32Q9BYC8 188 aaKnown RBP2.35□□□□□ -2.03
SCN1A-219ENST00000641575 SMPXQ9UHP9 88 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 SSC5DA1L4H1 1573 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 GLI3P10071 1580 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 IGKV3OR2-268A0A0C4DH90 116 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP2.35□□□□□ -2.03
SCN1A-219ENST00000641575 CLPSL1A2RUU4 121 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 MBD3L4A6NDZ8 208 aaPredicted RBP2.35□□□□□ -2.03
SCN1A-219ENST00000641575 MBD3L3A6NE82 208 aaPredicted RBP2.35□□□□□ -2.03
SCN1A-219ENST00000641575 MBD3L5A6NJ08 208 aaPredicted RBP2.35□□□□□ -2.03
SCN1A-219ENST00000641575 F2Z2F3 143 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 JMJD7-PLA2G4BH0Y9G9 81 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 LY6EQ16553 131 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 LAIR2Q6ISS4 152 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 OR51G1Q8NGK1 321 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 MBD3L2Q8NHZ7 208 aaPredicted RBP2.35□□□□□ -2.03
SCN1A-219ENST00000641575 AQP3Q92482 292 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 ZNF503Q96F45 646 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 PRR15LQ9BU68 103 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 MS4A8Q9BY19 250 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 TTTY12Q9BZ98 90 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 PNRC2Q9NPJ4 139 aaKnown RBP2.35□□□□□ -2.03
SCN1A-219ENST00000641575 PEX11BO96011 259 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 ADMP35318 185 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 TAL2Q16559 108 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 CENPWQ5EE01 88 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 TMEM144Q7Z5S9 345 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 ZNF436-AS1Q8NC38 126 aaPredicted RBP2.35□□□□□ -2.03
SCN1A-219ENST00000641575 SP7Q8TDD2 431 aaPredicted RBP2.35□□□□□ -2.03
SCN1A-219ENST00000641575 BAALCQ8WXS3 180 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 Q96M85 177 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 VSTM2LQ96N03 204 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 LRP12Q9Y561 859 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 DEFB108AA8MXU0 73 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 INS-IGF2F8WCM5 200 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 GAGE7O76087 117 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 GAGE12FP0CL80 117 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 GAGE12GP0CL81 117 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 GAGE12IP0CL82 117 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 EFNB1P98172 346 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 SHISA2Q6UWI4 295 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 Q6ZT83 130 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 DYNAPQ8N1N2 210 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 PRCDQ00LT1 54 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 FAM74A4Q5TZK3 123 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 XAF1Q6GPH4 301 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 FIZ1Q96SL8 496 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 A0A1W2PRX2 142 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 GATA4P43694 442 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 UBE2AP49459 152 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 TMEM30AQ9NV96 361 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 PRR13Q9NZ81 148 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 GAGE12BA1L429 117 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 F8VVB4 439 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 F8VWA3 439 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 CXCL3P19876 107 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 ZNF385AQ96PM9 386 aaKnown RBP2.35□□□□□ -2.03
SCN1A-219ENST00000641575 JPT1Q9UK76 154 aa2.35□□□□□ -2.03
SCN1A-219ENST00000641575 ERG28Q9UKR5 140 aa2.35□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms