RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 IGHV4-28A0A0C4DH34 117 aa11.76□□□□□ -0.53
CLN3-264ENST00000637985 AKR1C4P17516 323 aa11.76□□□□□ -0.53
CLN3-264ENST00000637985 CCR6P51684 374 aa11.76□□□□□ -0.53
CLN3-264ENST00000637985 AP3S2P59780 193 aa11.76□□□□□ -0.53
CLN3-264ENST00000637985 RPL11P62913 178 aaKnown RBP11.76□□□□□ -0.53
CLN3-264ENST00000637985 SRPXP78539 464 aa11.76□□□□□ -0.53
CLN3-264ENST00000637985 TIGITQ495A1 244 aa11.76□□□□□ -0.53
CLN3-264ENST00000637985 C1orf134Q5TEV5 83 aa11.76□□□□□ -0.53
CLN3-264ENST00000637985 ETFRF1Q6IPR1 90 aa11.76□□□□□ -0.53
CLN3-264ENST00000637985 PRSS54Q6PEW0 395 aa11.76□□□□□ -0.53
CLN3-264ENST00000637985 NDUFAF3Q9BU61 184 aa11.76□□□□□ -0.53
CLN3-264ENST00000637985 UBR4Q5T4S7 5183 aa11.76□□□□□ -0.53
CLN3-264ENST00000637985 DEFB131BA0A096LNP1 70 aa11.75□□□□□ -0.53
CLN3-264ENST00000637985 IGHV3-66A0A0C4DH42 116 aa11.75□□□□□ -0.53
CLN3-264ENST00000637985 IFNA10P01566 189 aa11.75□□□□□ -0.53
CLN3-264ENST00000637985 NPY1RP25929 384 aa11.75□□□□□ -0.53
CLN3-264ENST00000637985 YPEL3P61236 119 aaPredicted RBP11.75□□□□□ -0.53
CLN3-264ENST00000637985 SUPT4H1P63272 117 aaKnown RBP11.75□□□□□ -0.53
CLN3-264ENST00000637985 KLF9Q13886 244 aaPredicted RBP11.75□□□□□ -0.53
CLN3-264ENST00000637985 SMCO1Q147U7 214 aa11.75□□□□□ -0.53
CLN3-264ENST00000637985 PYDC2Q56P42 97 aa11.75□□□□□ -0.53
CLN3-264ENST00000637985 LGI3Q8N145 548 aa11.75□□□□□ -0.53
CLN3-264ENST00000637985 CENPSQ8N2Z9 138 aa11.75□□□□□ -0.53
CLN3-264ENST00000637985 Q8WTZ3 238 aa11.75□□□□□ -0.53
CLN3-264ENST00000637985 DEDD2Q8WXF8 326 aa11.75□□□□□ -0.53
CLN3-264ENST00000637985 PRR13Q9NZ81 148 aa11.75□□□□□ -0.53
CLN3-264ENST00000637985 HSPB7Q9UBY9 170 aa11.75□□□□□ -0.53
CLN3-264ENST00000637985 U3KQ87 197 aa11.75□□□□□ -0.53
CLN3-264ENST00000637985 ELOA3CA0A087WX78 387 aaPredicted RBP11.74□□□□□ -0.53
CLN3-264ENST00000637985 IGLC1P0CG04 106 aa11.74□□□□□ -0.53
CLN3-264ENST00000637985 OR10J1P30954 320 aa11.74□□□□□ -0.53
CLN3-264ENST00000637985 S100A5P33763 92 aa11.74□□□□□ -0.53
CLN3-264ENST00000637985 RND2P52198 227 aa11.74□□□□□ -0.53
CLN3-264ENST00000637985 LYZL2Q7Z4W2 148 aa11.74□□□□□ -0.53
CLN3-264ENST00000637985 TOMM5Q8N4H5 51 aa11.74□□□□□ -0.53
CLN3-264ENST00000637985 TMEM170AQ8WVE7 144 aa11.74□□□□□ -0.53
CLN3-264ENST00000637985 TRIM63Q969Q1 353 aa11.74□□□□□ -0.53
CLN3-264ENST00000637985 GRAMD2BQ96HH9 432 aa11.74□□□□□ -0.53
CLN3-264ENST00000637985 DUXBA0A1W2PPF3 345 aa11.73□□□□□ -0.53
CLN3-264ENST00000637985 MIFP14174 115 aa11.73□□□□□ -0.53
CLN3-264ENST00000637985 P2RY1P47900 373 aa11.73□□□□□ -0.53
CLN3-264ENST00000637985 EIF2B2P49770 351 aaKnown RBP11.73□□□□□ -0.53
CLN3-264ENST00000637985 ATP5IP56385 69 aaPredicted RBP11.73□□□□□ -0.53
CLN3-264ENST00000637985 DEFB131AP59861 70 aa11.73□□□□□ -0.53
CLN3-264ENST00000637985 TNP2Q05952 138 aa11.73□□□□□ -0.53
CLN3-264ENST00000637985 TMEM128Q5BJH2 165 aa11.73□□□□□ -0.53
CLN3-264ENST00000637985 DTD1Q8TEA8 209 aa11.73□□□□□ -0.53
CLN3-264ENST00000637985 SCRT1Q9BWW7 348 aa11.73□□□□□ -0.53
CLN3-264ENST00000637985 RABAC1Q9UI14 185 aa11.73□□□□□ -0.53
CLN3-264ENST00000637985 U3KQE9 123 aa11.73□□□□□ -0.53
CLN3-264ENST00000637985 V9GYH0 126 aa11.73□□□□□ -0.53
CLN3-264ENST00000637985 CCDC160A6NGH7 325 aa11.72□□□□□ -0.53
CLN3-264ENST00000637985 NXPH3O95157 252 aa11.72□□□□□ -0.53
CLN3-264ENST00000637985 C12orf74Q32Q52 190 aa11.72□□□□□ -0.53
CLN3-264ENST00000637985 NPIPB3Q92617 1050 aa11.72□□□□□ -0.53
CLN3-264ENST00000637985 SLC25A21Q9BQT8 299 aaPredicted RBP11.72□□□□□ -0.53
CLN3-264ENST00000637985 RBKSQ9H477 322 aa11.72□□□□□ -0.53
CLN3-264ENST00000637985 HELTA6NFD8 242 aa11.71□□□□□ -0.53
CLN3-264ENST00000637985 K7EQG2 157 aa11.71□□□□□ -0.53
CLN3-264ENST00000637985 IFNA21P01568 189 aa11.71□□□□□ -0.53
CLN3-264ENST00000637985 HNRNPCP07910 306 aaKnown RBP eCLIP11.71□□□□□ -0.53
CLN3-264ENST00000637985 AP2S1P53680 142 aaPredicted RBP11.71□□□□□ -0.53
CLN3-264ENST00000637985 LEMD1Q68G75 181 aa11.71□□□□□ -0.53
CLN3-264ENST00000637985 TMED4Q7Z7H5 227 aa11.71□□□□□ -0.53
CLN3-264ENST00000637985 FAM24BQ8N5W8 94 aa11.71□□□□□ -0.53
CLN3-264ENST00000637985 STXBP6Q8NFX7 210 aa11.71□□□□□ -0.53
CLN3-264ENST00000637985 OR1S1Q8NH92 325 aa11.71□□□□□ -0.53
CLN3-264ENST00000637985 ZNF705EA8MWA4 302 aaPredicted RBP11.7□□□□□ -0.54
CLN3-264ENST00000637985 ZNF701M0R085 212 aaPredicted RBP11.7□□□□□ -0.54
CLN3-264ENST00000637985 TOMM40O96008 361 aa11.7□□□□□ -0.54
CLN3-264ENST00000637985 GIG44P09565 113 aaPredicted RBP11.7□□□□□ -0.54
CLN3-264ENST00000637985 RD3LP0DJH9 198 aa11.7□□□□□ -0.54
CLN3-264ENST00000637985 ZNF79Q15937 498 aa11.7□□□□□ -0.54
CLN3-264ENST00000637985 C16orf54Q6UWD8 224 aa11.7□□□□□ -0.54
CLN3-264ENST00000637985 ZNF767PQ75MW2 155 aa11.7□□□□□ -0.54
CLN3-264ENST00000637985 CCDC190Q86UF4 302 aa11.7□□□□□ -0.54
CLN3-264ENST00000637985 UBE2DNLQ8IWF7 75 aa11.7□□□□□ -0.54
CLN3-264ENST00000637985 STHQ8IWL8 128 aa11.7□□□□□ -0.54
CLN3-264ENST00000637985 LRTM2Q8N967 370 aa11.7□□□□□ -0.54
CLN3-264ENST00000637985 ACY3Q96HD9 319 aa11.7□□□□□ -0.54
CLN3-264ENST00000637985 CELA1Q9UNI1 258 aa11.7□□□□□ -0.54
CLN3-264ENST00000637985 X6R8D5 127 aa11.7□□□□□ -0.54
CLN3-264ENST00000637985 AGRNO00468 2067 aa11.7□□□□□ -0.54
CLN3-264ENST00000637985 PITX3O75364 302 aa11.69□□□□□ -0.54
CLN3-264ENST00000637985 IL4P05112 153 aa11.69□□□□□ -0.54
CLN3-264ENST00000637985 SLC25A6P12236 298 aa11.69□□□□□ -0.54
CLN3-264ENST00000637985 GPX4P36969 197 aaPredicted RBP11.69□□□□□ -0.54
CLN3-264ENST00000637985 DCANP1Q8TF63 244 aa11.69□□□□□ -0.54
CLN3-264ENST00000637985 GLMPQ8WWB7 406 aa11.69□□□□□ -0.54
CLN3-264ENST00000637985 RBM38Q9H0Z9 239 aaKnown RBP11.69□□□□□ -0.54
CLN3-264ENST00000637985 MYCBP2O75592 4640 aa11.69□□□□□ -0.54
CLN3-264ENST00000637985 NACAE9PAV3 2078 aa11.68□□□□□ -0.54
CLN3-264ENST00000637985 FAM90A26D6RGX4 464 aa11.68□□□□□ -0.54
CLN3-264ENST00000637985 VAMP1P23763 118 aa11.68□□□□□ -0.54
CLN3-264ENST00000637985 USF2Q15853 346 aaPredicted RBP11.68□□□□□ -0.54
CLN3-264ENST00000637985 TMEM41BQ5BJD5 291 aa11.68□□□□□ -0.54
CLN3-264ENST00000637985 SPANXN2Q5MJ10 180 aa11.68□□□□□ -0.54
CLN3-264ENST00000637985 MED6O75586 246 aa11.67□□□□□ -0.54
CLN3-264ENST00000637985 ZNF688P0C7X2 276 aa11.67□□□□□ -0.54
CLN3-264ENST00000637985 PSG1P11464 419 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms