RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 MYF5P13349 255 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 MEOX1P50221 254 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 KLRB1Q12918 225 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 FAM231DQ6ZW35 169 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 UBE2WQ96B02 151 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 STARD5Q9NSY2 213 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 ATG2BQ96BY7 2078 aa4.71□□□□□ -1.66
SCN1A-216ENST00000637968 COL5A3P25940 1745 aaPredicted RBP4.7□□□□□ -1.66
SCN1A-216ENST00000637968 PRKNO60260 465 aaPredicted RBP4.7□□□□□ -1.66
SCN1A-216ENST00000637968 CECR9P0C854 216 aa4.7□□□□□ -1.66
SCN1A-216ENST00000637968 FHL5Q5TD97 284 aa4.7□□□□□ -1.66
SCN1A-216ENST00000637968 ZC2HC1BQ5TFG8 222 aa4.7□□□□□ -1.66
SCN1A-216ENST00000637968 PRNDQ9UKY0 176 aa4.7□□□□□ -1.66
SCN1A-216ENST00000637968 A0A1W2PPV9 198 aa4.7□□□□□ -1.66
SCN1A-216ENST00000637968 C8orf88P0DMB2 117 aa4.7□□□□□ -1.66
SCN1A-216ENST00000637968 EFNB3Q15768 340 aa4.7□□□□□ -1.66
SCN1A-216ENST00000637968 ARTNQ5T4W7 220 aa4.7□□□□□ -1.66
SCN1A-216ENST00000637968 WFDC3Q8IUB2 231 aa4.7□□□□□ -1.66
SCN1A-216ENST00000637968 KIR2DL5BQ8NHK3 375 aa4.7□□□□□ -1.66
SCN1A-216ENST00000637968 MED12LQ86YW9 2145 aa4.7□□□□□ -1.66
SCN1A-216ENST00000637968 TRPM6Q9BX84 2022 aa4.7□□□□□ -1.66
SCN1A-216ENST00000637968 A0A1W2PPC4 97 aa4.7□□□□□ -1.66
SCN1A-216ENST00000637968 H7C2G1 150 aa4.7□□□□□ -1.66
SCN1A-216ENST00000637968 PEX7O00628 323 aa4.7□□□□□ -1.66
SCN1A-216ENST00000637968 TIMM8AO60220 97 aaPredicted RBP4.7□□□□□ -1.66
SCN1A-216ENST00000637968 RBP4P02753 201 aa4.7□□□□□ -1.66
SCN1A-216ENST00000637968 ATP5G1P05496 136 aa4.7□□□□□ -1.66
SCN1A-216ENST00000637968 CD7P09564 240 aa4.7□□□□□ -1.66
SCN1A-216ENST00000637968 CKS2P33552 79 aa4.7□□□□□ -1.66
SCN1A-216ENST00000637968 Q6ZRM9 215 aa4.7□□□□□ -1.66
SCN1A-216ENST00000637968 NTN5Q8WTR8 489 aaPredicted RBP4.7□□□□□ -1.66
SCN1A-216ENST00000637968 PRO0628Q9UI54 55 aa4.7□□□□□ -1.66
SCN1A-216ENST00000637968 FAM90A10PA6NDY2 464 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 FAM90A18PA6NE21 464 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 FAM90A16PA6NEW6 464 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 FAM90A20PA6NIJ5 464 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 FAM90A8PA6NJQ4 464 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 LIPT2A6NK58 231 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 FAM90A7PA6NKC0 464 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 FAM90A9PA6NNJ1 464 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 FAM90A22PA8MWA6 464 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 FAM90A12PA8MX19 464 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 FAM90A5PA8MXJ8 464 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 FAM90A23PA8MXZ1 464 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 C4orf51C9J302 202 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 RS1O15537 224 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 IGHMP01871 453 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 FAM90A15PP0C7V4 464 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 FAM90A13PP0C7W8 464 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 FAM90A14PP0C7W9 464 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 FAM90A24PP0C7X0 464 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 NHLRC4P0CG21 123 aaPredicted RBP4.69□□□□□ -1.66
SCN1A-216ENST00000637968 RPS28P62857 69 aaKnown RBP4.69□□□□□ -1.66
SCN1A-216ENST00000637968 C1orf195Q5TG92 126 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 MIR17HGQ75NE6 70 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 SLC37A2Q8TED4 501 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 TNS1Q9HBL0 1735 aaKnown RBP4.69□□□□□ -1.66
SCN1A-216ENST00000637968 H0YGG7 62 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 DLL1O00548 723 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 CELA2AP08217 269 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 FGF6P10767 208 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 FAM214BQ7L5A3 538 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 COPS9Q8WXC6 57 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 CHCHD2Q9Y6H1 151 aaPredicted RBP4.69□□□□□ -1.66
SCN1A-216ENST00000637968 CXorf51AA0A1B0GTR3 108 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 OOSP1A8MZH6 123 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 K7ESM1 405 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 CDX4O14627 284 aaPredicted RBP4.69□□□□□ -1.66
SCN1A-216ENST00000637968 NDUFC2O95298 119 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 B4GALT1P15291 398 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 CCL1P22362 96 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 ATXN8Q156A1 80 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 ORMDL3Q8N138 153 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 COQ2Q96H96 371 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 PAXXQ9BUH6 204 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 SPRY4Q9C004 299 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 OCIAD1Q9NX40 245 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 MDFICQ9P1T7 246 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 MDC1Q14676 2089 aaKnown RBP4.69□□□□□ -1.66
SCN1A-216ENST00000637968 TPRP12270 2363 aaKnown RBP4.69□□□□□ -1.66
SCN1A-216ENST00000637968 TRAV13-1A0A0B4J241 112 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 SCRG1O75711 98 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 CD3EP07766 207 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 LGALS1P09382 135 aaKnown RBP4.69□□□□□ -1.66
SCN1A-216ENST00000637968 IFI6P09912 130 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 FANCMQ8IYD8 2048 aa4.69□□□□□ -1.66
SCN1A-216ENST00000637968 MGAMO43451 1857 aa4.68□□□□□ -1.66
SCN1A-216ENST00000637968 KIAA1671Q9BY89 1806 aa4.68□□□□□ -1.66
SCN1A-216ENST00000637968 DNAJC13O75165 2243 aa4.68□□□□□ -1.66
SCN1A-216ENST00000637968 MBD3L4A6NDZ8 208 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-216ENST00000637968 MBD3L3A6NE82 208 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-216ENST00000637968 MBD3L5A6NJ08 208 aaPredicted RBP4.68□□□□□ -1.66
SCN1A-216ENST00000637968 IGKV1-5P01602 117 aa4.68□□□□□ -1.66
SCN1A-216ENST00000637968 MALP21145 153 aa4.68□□□□□ -1.66
SCN1A-216ENST00000637968 LY6DQ14210 128 aa4.68□□□□□ -1.66
SCN1A-216ENST00000637968 TMEM196Q5HYL7 178 aa4.68□□□□□ -1.66
SCN1A-216ENST00000637968 IFI27L2Q9H2X8 130 aa4.68□□□□□ -1.66
SCN1A-216ENST00000637968 HEATR5BQ9P2D3 2071 aa4.68□□□□□ -1.66
SCN1A-216ENST00000637968 HELZP42694 1942 aaKnown RBP4.68□□□□□ -1.66
SCN1A-216ENST00000637968 PHF3Q92576 2039 aaKnown RBP4.68□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms