RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 TOMM20LQ6UXN7 152 aa14.34□□□□□ -0.11
CLN3-260ENST00000637578 TMEM116Q8NCL8 245 aa14.34□□□□□ -0.11
CLN3-260ENST00000637578 ACY3Q96HD9 319 aa14.34□□□□□ -0.11
CLN3-260ENST00000637578 RHPN1-AS1Q9BWJ2 59 aa14.34□□□□□ -0.11
CLN3-260ENST00000637578 OR5AC2Q9NZP5 309 aa14.34□□□□□ -0.11
CLN3-260ENST00000637578 TRAV14DV4A0A0A6YYC5 116 aa14.33□□□□□ -0.12
CLN3-260ENST00000637578 CLN5O75503 358 aa14.33□□□□□ -0.12
CLN3-260ENST00000637578 YIF1AO95070 293 aa14.33□□□□□ -0.12
CLN3-260ENST00000637578 GPX4P36969 197 aaPredicted RBP14.33□□□□□ -0.12
CLN3-260ENST00000637578 ZNF600Q6ZNG1 722 aa14.33□□□□□ -0.12
CLN3-260ENST00000637578 RNF2Q99496 336 aa14.33□□□□□ -0.12
CLN3-260ENST00000637578 FAM110AQ9BQ89 295 aa14.33□□□□□ -0.12
CLN3-260ENST00000637578 ZFAND3Q9H8U3 227 aa14.33□□□□□ -0.12
CLN3-260ENST00000637578 LYRM2Q9NU23 88 aaPredicted RBP14.33□□□□□ -0.12
CLN3-260ENST00000637578 FAM24AA6NFZ4 105 aa14.32□□□□□ -0.12
CLN3-260ENST00000637578 MPC2O95563 127 aa14.32□□□□□ -0.12
CLN3-260ENST00000637578 RLN2P04090 185 aa14.32□□□□□ -0.12
CLN3-260ENST00000637578 GAMTQ14353 236 aa14.32□□□□□ -0.12
CLN3-260ENST00000637578 CASC10Q5T4H9 136 aa14.32□□□□□ -0.12
CLN3-260ENST00000637578 FAM90A2PQ658T7 463 aa14.32□□□□□ -0.12
CLN3-260ENST00000637578 ACOT7LQ6ZUV0 252 aa14.32□□□□□ -0.12
CLN3-260ENST00000637578 NPIPB3Q92617 1050 aa14.32□□□□□ -0.12
CLN3-260ENST00000637578 SLC35E1Q96K37 410 aa14.32□□□□□ -0.12
CLN3-260ENST00000637578 ARL16Q0P5N6 197 aa14.31□□□□□ -0.12
CLN3-260ENST00000637578 Q6ZNX1 250 aa14.31□□□□□ -0.12
CLN3-260ENST00000637578 RNF126Q9BV68 326 aa14.31□□□□□ -0.12
CLN3-260ENST00000637578 PUS1Q9Y606 427 aaKnown RBP eCLIP14.31□□□□□ -0.12
CLN3-260ENST00000637578 IGSF23A1L1A6 192 aa14.3□□□□□ -0.12
CLN3-260ENST00000637578 E5RGE8 158 aa14.3□□□□□ -0.12
CLN3-260ENST00000637578 IGKV1-17P01599 117 aa14.3□□□□□ -0.12
CLN3-260ENST00000637578 GIPP09681 153 aaPredicted RBP14.3□□□□□ -0.12
CLN3-260ENST00000637578 IGLC1P0CG04 106 aa14.3□□□□□ -0.12
CLN3-260ENST00000637578 ODF3L2Q3SX64 289 aa14.3□□□□□ -0.12
CLN3-260ENST00000637578 OR10P1Q8NGE3 313 aa14.3□□□□□ -0.12
CLN3-260ENST00000637578 GINS3Q9BRX5 216 aa14.3□□□□□ -0.12
CLN3-260ENST00000637578 VSIRQ9H7M9 311 aa14.3□□□□□ -0.12
CLN3-260ENST00000637578 RETNQ9HD89 108 aa14.3□□□□□ -0.12
CLN3-260ENST00000637578 OR4C46A6NHA9 309 aa14.3□□□□□ -0.12
CLN3-260ENST00000637578 CST7O76096 145 aa14.3□□□□□ -0.12
CLN3-260ENST00000637578 PET100P0DJ07 73 aa14.3□□□□□ -0.12
CLN3-260ENST00000637578 OR10J1P30954 320 aa14.3□□□□□ -0.12
CLN3-260ENST00000637578 TIGITQ495A1 244 aa14.3□□□□□ -0.12
CLN3-260ENST00000637578 TMEM252Q8N6L7 170 aa14.3□□□□□ -0.12
CLN3-260ENST00000637578 GGTLC1Q9BX51 225 aa14.3□□□□□ -0.12
CLN3-260ENST00000637578 MBD2Q9UBB5 411 aa14.3□□□□□ -0.12
CLN3-260ENST00000637578 LOC102724200A0A096LPH7 203 aaPredicted RBP14.29□□□□□ -0.12
CLN3-260ENST00000637578 IGHV3-49A0A0A0MS15 119 aa14.29□□□□□ -0.12
CLN3-260ENST00000637578 CD5P06127 495 aa14.29□□□□□ -0.12
CLN3-260ENST00000637578 LYL1P12980 280 aa14.29□□□□□ -0.12
CLN3-260ENST00000637578 ASB13Q8WXK3 278 aa14.29□□□□□ -0.12
CLN3-260ENST00000637578 TRAV30A0A087WSZ9 112 aa14.28□□□□□ -0.12
CLN3-260ENST00000637578 SCGB2A1O75556 95 aa14.28□□□□□ -0.12
CLN3-260ENST00000637578 P2RY1P47900 373 aa14.28□□□□□ -0.12
CLN3-260ENST00000637578 DLK1P80370 383 aa14.28□□□□□ -0.12
CLN3-260ENST00000637578 LILRB2Q8N423 598 aa14.28□□□□□ -0.12
CLN3-260ENST00000637578 TMEM217Q8N7C4 229 aa14.28□□□□□ -0.12
CLN3-260ENST00000637578 OR1S2Q8NGQ3 325 aa14.28□□□□□ -0.12
CLN3-260ENST00000637578 UBQLN2Q9UHD9 624 aa14.28□□□□□ -0.12
CLN3-260ENST00000637578 IGHV3OR16-13A0A075B7E8 117 aa14.27□□□□□ -0.12
CLN3-260ENST00000637578 IGHV3-74A0A0B4J1X5 117 aa14.27□□□□□ -0.12
CLN3-260ENST00000637578 APOHP02749 345 aaPredicted RBP14.27□□□□□ -0.12
CLN3-260ENST00000637578 SULT1A1P50225 295 aa14.27□□□□□ -0.12
CLN3-260ENST00000637578 RAP2BP61225 183 aa14.27□□□□□ -0.12
CLN3-260ENST00000637578 AKR1C1Q04828 323 aa14.27□□□□□ -0.12
CLN3-260ENST00000637578 Q5BKY6 102 aa14.27□□□□□ -0.12
CLN3-260ENST00000637578 STX12Q86Y82 276 aa14.27□□□□□ -0.12
CLN3-260ENST00000637578 CHAC2Q8WUX2 184 aa14.27□□□□□ -0.12
CLN3-260ENST00000637578 ST8SIA2Q92186 375 aa14.27□□□□□ -0.12
CLN3-260ENST00000637578 IGKV1D-37A0A075B6S9 117 aa14.26□□□□□ -0.13
CLN3-260ENST00000637578 IGKV1OR2-108A0A075B7D4 117 aa14.26□□□□□ -0.13
CLN3-260ENST00000637578 SMCO3A2RU48 225 aa14.26□□□□□ -0.13
CLN3-260ENST00000637578 BMI1P35226 326 aa14.26□□□□□ -0.13
CLN3-260ENST00000637578 SLC38A11Q08AI6 406 aa14.26□□□□□ -0.13
CLN3-260ENST00000637578 ZFP92A6NM28 416 aa14.26□□□□□ -0.13
CLN3-260ENST00000637578 CRYBB3P26998 211 aa14.26□□□□□ -0.13
CLN3-260ENST00000637578 EWSR1Q01844 656 aaKnown RBP eCLIP14.26□□□□□ -0.13
CLN3-260ENST00000637578 THAP6Q8TBB0 222 aa14.26□□□□□ -0.13
CLN3-260ENST00000637578 SLC25A31Q9H0C2 315 aa14.26□□□□□ -0.13
CLN3-260ENST00000637578 NPPCP23582 126 aa14.25□□□□□ -0.13
CLN3-260ENST00000637578 CMC4P56277 68 aaPredicted RBP14.25□□□□□ -0.13
CLN3-260ENST00000637578 YPEL3P61236 119 aaPredicted RBP14.25□□□□□ -0.13
CLN3-260ENST00000637578 TCF24Q7RTU0 167 aa14.25□□□□□ -0.13
CLN3-260ENST00000637578 TMEM144Q7Z5S9 345 aa14.25□□□□□ -0.13
CLN3-260ENST00000637578 THAP8Q8NA92 274 aa14.25□□□□□ -0.13
CLN3-260ENST00000637578 OR2T35Q8NGX2 323 aa14.25□□□□□ -0.13
CLN3-260ENST00000637578 OVOL2Q9BRP0 275 aa14.25□□□□□ -0.13
CLN3-260ENST00000637578 GGACTQ9BVM4 153 aa14.25□□□□□ -0.13
CLN3-260ENST00000637578 RYR3Q15413 4870 aa14.24□□□□□ -0.13
CLN3-260ENST00000637578 FNDC10F2Z333 226 aa14.24□□□□□ -0.13
CLN3-260ENST00000637578 NHLH2Q02577 135 aa14.24□□□□□ -0.13
CLN3-260ENST00000637578 ZNF90Q03938 601 aa14.24□□□□□ -0.13
CLN3-260ENST00000637578 FGL1Q08830 312 aa14.24□□□□□ -0.13
CLN3-260ENST00000637578 TRGV9Q99603 122 aa14.24□□□□□ -0.13
CLN3-260ENST00000637578 TRAV2A0A0B4J234 112 aa14.23□□□□□ -0.13
CLN3-260ENST00000637578 KIR2DL5BA0A0G2JN68 375 aa14.23□□□□□ -0.13
CLN3-260ENST00000637578 KIR2DL5BA0A0G2JPC4 375 aa14.23□□□□□ -0.13
CLN3-260ENST00000637578 DFFBO76075 338 aa14.23□□□□□ -0.13
CLN3-260ENST00000637578 S100A11P31949 105 aa14.23□□□□□ -0.13
CLN3-260ENST00000637578 HBG1P69891 147 aa14.23□□□□□ -0.13
CLN3-260ENST00000637578 HBG2P69892 147 aa14.23□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms