RNA–Protein interactions for RNA: ENST00000636853.1

CLN3-251, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 2,289 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-251ENST00000636853 TYMSP04818 313 aa12.42□□□□□ -0.42
CLN3-251ENST00000636853 PYYP10082 97 aa12.42□□□□□ -0.42
CLN3-251ENST00000636853 CCDC144NLQ6NUI1 221 aa12.42□□□□□ -0.42
CLN3-251ENST00000636853 MRPL52Q86TS9 123 aaKnown RBP12.42□□□□□ -0.42
CLN3-251ENST00000636853 ANAPC16Q96DE5 110 aa12.42□□□□□ -0.42
CLN3-251ENST00000636853 TBX15Q96SF7 602 aa12.42□□□□□ -0.42
CLN3-251ENST00000636853 RNF2Q99496 336 aa12.42□□□□□ -0.42
CLN3-251ENST00000636853 NCBP2LA6PVI3 153 aaKnown RBP12.41□□□□□ -0.42
CLN3-251ENST00000636853 PRB1P04280 392 aa12.41□□□□□ -0.42
CLN3-251ENST00000636853 CRYBB3P26998 211 aa12.41□□□□□ -0.42
CLN3-251ENST00000636853 BPIFB3P59826 476 aa12.41□□□□□ -0.42
CLN3-251ENST00000636853 C5orf64Q2M2E5 130 aa12.41□□□□□ -0.42
CLN3-251ENST00000636853 MINOS1Q5TGZ0 78 aa12.41□□□□□ -0.42
CLN3-251ENST00000636853 OR1B1Q8NGR6 318 aa12.41□□□□□ -0.42
CLN3-251ENST00000636853 OCC1Q8TAD7 63 aa12.41□□□□□ -0.42
CLN3-251ENST00000636853 C11orf52Q96A22 123 aa12.41□□□□□ -0.42
CLN3-251ENST00000636853 OR5B12Q96R08 314 aa12.41□□□□□ -0.42
CLN3-251ENST00000636853 TRGV9Q99603 122 aa12.41□□□□□ -0.42
CLN3-251ENST00000636853 MINOS1-NBL1R4GNA1 71 aa12.41□□□□□ -0.42
CLN3-251ENST00000636853 GGTLC3B5MD39 225 aa12.41□□□□□ -0.42
CLN3-251ENST00000636853 SNRPCP09234 159 aaKnown RBP12.41□□□□□ -0.42
CLN3-251ENST00000636853 UBE2L3P68036 154 aaKnown RBP12.41□□□□□ -0.42
CLN3-251ENST00000636853 LINC00305Q7Z4B0 112 aa12.41□□□□□ -0.42
CLN3-251ENST00000636853 TMEM18Q96B42 140 aa12.41□□□□□ -0.42
CLN3-251ENST00000636853 TMEM68Q96MH6 324 aa12.41□□□□□ -0.42
CLN3-251ENST00000636853 XKRY2A2RUG3 117 aa12.4□□□□□ -0.42
CLN3-251ENST00000636853 I3L2K1 104 aa12.4□□□□□ -0.42
CLN3-251ENST00000636853 SUMO1P63165 101 aaKnown RBP12.4□□□□□ -0.42
CLN3-251ENST00000636853 IQCJQ1A5X6 159 aa12.4□□□□□ -0.42
CLN3-251ENST00000636853 BTF3L4Q96K17 158 aa12.4□□□□□ -0.42
CLN3-251ENST00000636853 SRSF8Q9BRL6 282 aaKnown RBP12.4□□□□□ -0.42
CLN3-251ENST00000636853 ARL2-SNX15V9GYD0 113 aa12.4□□□□□ -0.42
CLN3-251ENST00000636853 KLF17Q5JT82 389 aaPredicted RBP12.4□□□□□ -0.42
CLN3-251ENST00000636853 CCL19Q99731 98 aa12.4□□□□□ -0.42
CLN3-251ENST00000636853 PAXXQ9BUH6 204 aa12.4□□□□□ -0.42
CLN3-251ENST00000636853 OOSP1A8MZH6 123 aa12.39□□□□□ -0.43
CLN3-251ENST00000636853 GGCTO75223 188 aaKnown RBP12.39□□□□□ -0.43
CLN3-251ENST00000636853 RAB4AP20338 218 aa12.39□□□□□ -0.43
CLN3-251ENST00000636853 SRP14P37108 136 aaKnown RBP12.39□□□□□ -0.43
CLN3-251ENST00000636853 USF2Q15853 346 aaPredicted RBP12.39□□□□□ -0.43
CLN3-251ENST00000636853 ACTL10Q5JWF8 245 aa12.39□□□□□ -0.43
CLN3-251ENST00000636853 TMEM11P17152 192 aa12.39□□□□□ -0.43
CLN3-251ENST00000636853 UBE2E1P51965 193 aa12.39□□□□□ -0.43
CLN3-251ENST00000636853 CX3CL1P78423 397 aa12.39□□□□□ -0.43
CLN3-251ENST00000636853 FAM120AOSQ5T036 256 aa12.39□□□□□ -0.43
CLN3-251ENST00000636853 Q8N6K4 173 aa12.39□□□□□ -0.43
CLN3-251ENST00000636853 A0A1W2PPQ1 181 aa12.38□□□□□ -0.43
CLN3-251ENST00000636853 A0A1W2PRE2 83 aa12.38□□□□□ -0.43
CLN3-251ENST00000636853 K7EN84 100 aa12.38□□□□□ -0.43
CLN3-251ENST00000636853 IGLC1P0CG04 106 aa12.38□□□□□ -0.43
CLN3-251ENST00000636853 NDPQ00604 133 aa12.38□□□□□ -0.43
CLN3-251ENST00000636853 SFRP2Q96HF1 295 aa12.38□□□□□ -0.43
CLN3-251ENST00000636853 AJUBAQ96IF1 538 aa12.38□□□□□ -0.43
CLN3-251ENST00000636853 FLNCQ14315 2725 aa12.38□□□□□ -0.43
CLN3-251ENST00000636853 USP24Q9UPU5 2620 aa12.37□□□□□ -0.43
CLN3-251ENST00000636853 MDFIC2A0A1B0GVS7 189 aa12.37□□□□□ -0.43
CLN3-251ENST00000636853 K7EIM0 57 aa12.37□□□□□ -0.43
CLN3-251ENST00000636853 SAA4P35542 130 aa12.37□□□□□ -0.43
CLN3-251ENST00000636853 TIGITQ495A1 244 aa12.37□□□□□ -0.43
CLN3-251ENST00000636853 PERPQ96FX8 193 aa12.37□□□□□ -0.43
CLN3-251ENST00000636853 TBL2Q9Y4P3 447 aaKnown RBP12.37□□□□□ -0.43
CLN3-251ENST00000636853 HELTA6NFD8 242 aa12.37□□□□□ -0.43
CLN3-251ENST00000636853 PSG1P11464 419 aa12.37□□□□□ -0.43
CLN3-251ENST00000636853 EBI3Q14213 229 aa12.37□□□□□ -0.43
CLN3-251ENST00000636853 ASPHD1Q5U4P2 390 aa12.37□□□□□ -0.43
CLN3-251ENST00000636853 ZNF562Q6V9R5 426 aa12.37□□□□□ -0.43
CLN3-251ENST00000636853 ARPC1AQ92747 370 aa12.37□□□□□ -0.43
CLN3-251ENST00000636853 FXYD5Q96DB9 178 aa12.37□□□□□ -0.43
CLN3-251ENST00000636853 IMMP2LQ96T52 175 aa12.37□□□□□ -0.43
CLN3-251ENST00000636853 S4R3C0 116 aa12.37□□□□□ -0.43
CLN3-251ENST00000636853 USP9XQ93008 2570 aaPredicted RBP12.37□□□□□ -0.43
CLN3-251ENST00000636853 HYPMO75409 117 aa12.36□□□□□ -0.43
CLN3-251ENST00000636853 CD99P14209 185 aa12.36□□□□□ -0.43
CLN3-251ENST00000636853 ERVFC1-1P60608 527 aa12.36□□□□□ -0.43
CLN3-251ENST00000636853 CENPWQ5EE01 88 aa12.36□□□□□ -0.43
CLN3-251ENST00000636853 FAM168AQ92567 244 aa12.36□□□□□ -0.43
CLN3-251ENST00000636853 BBC3Q96PG8 261 aaPredicted RBP12.36□□□□□ -0.43
CLN3-251ENST00000636853 DOPEY1Q5JWR5 2465 aa12.36□□□□□ -0.43
CLN3-251ENST00000636853 C9JCJ5 164 aa12.36□□□□□ -0.43
CLN3-251ENST00000636853 C1orf194Q5T5A4 169 aa12.36□□□□□ -0.43
CLN3-251ENST00000636853 LEMD1Q68G75 181 aa12.36□□□□□ -0.43
CLN3-251ENST00000636853 TEX38Q6PEX7 206 aa12.36□□□□□ -0.43
CLN3-251ENST00000636853 RBM14Q96PK6 669 aaKnown RBP12.36□□□□□ -0.43
CLN3-251ENST00000636853 RASL11BQ9BPW5 248 aa12.36□□□□□ -0.43
CLN3-251ENST00000636853 ZFHX3Q15911 3703 aa12.36□□□□□ -0.43
CLN3-251ENST00000636853 ABCA2Q9BZC7 2435 aa12.35□□□□□ -0.43
CLN3-251ENST00000636853 IGHV4-61A0A0C4DH41 118 aa12.35□□□□□ -0.43
CLN3-251ENST00000636853 KIR2DL5BA0A0G2JN68 375 aa12.35□□□□□ -0.43
CLN3-251ENST00000636853 KIR2DL5BA0A0G2JPC4 375 aa12.35□□□□□ -0.43
CLN3-251ENST00000636853 M0QZK8 103 aa12.35□□□□□ -0.43
CLN3-251ENST00000636853 M0R143 59 aa12.35□□□□□ -0.43
CLN3-251ENST00000636853 LYZP61626 148 aa12.35□□□□□ -0.43
CLN3-251ENST00000636853 RELQ04864 619 aaPredicted RBP12.35□□□□□ -0.43
CLN3-251ENST00000636853 OR5I1Q13606 314 aa12.35□□□□□ -0.43
CLN3-251ENST00000636853 KIR2DL5AQ8N109 375 aa12.35□□□□□ -0.43
CLN3-251ENST00000636853 PIP4P2Q8N4L2 257 aa12.35□□□□□ -0.43
CLN3-251ENST00000636853 A0A0U1RQK1 487 aa12.35□□□□□ -0.43
CLN3-251ENST00000636853 ZNF705GA8MUZ8 300 aaPredicted RBP12.35□□□□□ -0.43
CLN3-251ENST00000636853 IGKV1-17P01599 117 aa12.35□□□□□ -0.43
CLN3-251ENST00000636853 FAM106CPP0CH98 169 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms