RNA–Protein interactions for RNA: ENST00000636194.1

SCN1A-212, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 8,508 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-212ENST00000636194 CNRIP1Q96F85 164 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-212ENST00000636194 TIMM21Q9BVV7 248 aa5.08□□□□□ -1.6
SCN1A-212ENST00000636194 KLHDC2Q9Y2U9 406 aa5.08□□□□□ -1.6
SCN1A-212ENST00000636194 IZUMO1RA6ND01 250 aa5.08□□□□□ -1.6
SCN1A-212ENST00000636194 COL9A3Q14050 684 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-212ENST00000636194 FAM166AQ6J272 317 aa5.08□□□□□ -1.6
SCN1A-212ENST00000636194 IL17RELQ6ZVW7 336 aa5.08□□□□□ -1.6
SCN1A-212ENST00000636194 GP6Q9HCN6 339 aa5.08□□□□□ -1.6
SCN1A-212ENST00000636194 KIF26AQ9ULI4 1882 aaPredicted RBP5.08□□□□□ -1.6
SCN1A-212ENST00000636194 TRBV20-1A0A075B6N2 111 aa5.07□□□□□ -1.6
SCN1A-212ENST00000636194 CELA3AP09093 270 aa5.07□□□□□ -1.6
SCN1A-212ENST00000636194 ZXDCQ2QGD7 858 aaPredicted RBP5.07□□□□□ -1.6
SCN1A-212ENST00000636194 GLMPQ8WWB7 406 aa5.07□□□□□ -1.6
SCN1A-212ENST00000636194 TEX37Q96LM6 180 aa5.07□□□□□ -1.6
SCN1A-212ENST00000636194 TCF19Q9Y242 345 aa5.07□□□□□ -1.6
SCN1A-212ENST00000636194 FN1P02751 2386 aaKnown RBP5.07□□□□□ -1.6
SCN1A-212ENST00000636194 NUP210Q8TEM1 1887 aaPredicted RBP5.07□□□□□ -1.6
SCN1A-212ENST00000636194 GAGE12BA1L429 117 aa5.07□□□□□ -1.6
SCN1A-212ENST00000636194 PATE4P0C8F1 98 aa5.07□□□□□ -1.6
SCN1A-212ENST00000636194 IFITM1P13164 125 aa5.07□□□□□ -1.6
SCN1A-212ENST00000636194 DAD1P61803 113 aa5.07□□□□□ -1.6
SCN1A-212ENST00000636194 NPIPB13A6NJU9 1138 aa5.07□□□□□ -1.6
SCN1A-212ENST00000636194 UTF1Q5T230 341 aa5.07□□□□□ -1.6
SCN1A-212ENST00000636194 C20orf204Q6ZNR8 217 aa5.07□□□□□ -1.6
SCN1A-212ENST00000636194 PAQR9Q6ZVX9 377 aa5.07□□□□□ -1.6
SCN1A-212ENST00000636194 TRAF4Q9BUZ4 470 aaPredicted RBP5.07□□□□□ -1.6
SCN1A-212ENST00000636194 IL36BQ9NZH7 164 aa5.07□□□□□ -1.6
SCN1A-212ENST00000636194 SPNP16150 400 aa5.07□□□□□ -1.6
SCN1A-212ENST00000636194 PILRBQ9UKJ0 227 aa5.07□□□□□ -1.6
SCN1A-212ENST00000636194 TNRC6BQ9UPQ9 1833 aaKnown RBP5.07□□□□□ -1.6
SCN1A-212ENST00000636194 IGKV4-1P06312 121 aa5.07□□□□□ -1.6
SCN1A-212ENST00000636194 GCHFRP30047 84 aa5.07□□□□□ -1.6
SCN1A-212ENST00000636194 SLAQ13239 276 aa5.07□□□□□ -1.6
SCN1A-212ENST00000636194 TRBV25-1A0A075B6N4 114 aa5.07□□□□□ -1.6
SCN1A-212ENST00000636194 TRAV13-1A0A0B4J241 112 aa5.07□□□□□ -1.6
SCN1A-212ENST00000636194 A0A0G2JMM0 328 aa5.07□□□□□ -1.6
SCN1A-212ENST00000636194 A0A1W2PPB8 328 aa5.07□□□□□ -1.6
SCN1A-212ENST00000636194 KIR3DP1A8MWS1 328 aa5.07□□□□□ -1.6
SCN1A-212ENST00000636194 C12orf73Q69YU5 71 aa5.07□□□□□ -1.6
SCN1A-212ENST00000636194 RFLNAQ6ZTI6 216 aa5.07□□□□□ -1.6
SCN1A-212ENST00000636194 KLHDC9Q8NEP7 349 aa5.07□□□□□ -1.6
SCN1A-212ENST00000636194 BDP1A6H8Y1 2624 aa5.07□□□□□ -1.6
SCN1A-212ENST00000636194 IGHV3OR16-13A0A075B7E8 117 aa5.07□□□□□ -1.6
SCN1A-212ENST00000636194 IGHV3-74A0A0B4J1X5 117 aa5.07□□□□□ -1.6
SCN1A-212ENST00000636194 IGHV1OR15-9A0A0B4J2B8 117 aa5.07□□□□□ -1.6
SCN1A-212ENST00000636194 A0A1B0GVG6 124 aa5.07□□□□□ -1.6
SCN1A-212ENST00000636194 A0A1B0GX51 115 aa5.07□□□□□ -1.6
SCN1A-212ENST00000636194 IGHV3-23P01764 117 aa5.07□□□□□ -1.6
SCN1A-212ENST00000636194 ZNF79Q15937 498 aa5.07□□□□□ -1.6
SCN1A-212ENST00000636194 MUSTN1Q8IVN3 82 aa5.07□□□□□ -1.6
SCN1A-212ENST00000636194 USMG5Q96IX5 58 aa5.07□□□□□ -1.6
SCN1A-212ENST00000636194 PRB1P04280 392 aa5.06□□□□□ -1.6
SCN1A-212ENST00000636194 RPL35AP18077 110 aaKnown RBP5.06□□□□□ -1.6
SCN1A-212ENST00000636194 PEAR1Q5VY43 1037 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-212ENST00000636194 ST6GALNAC6Q969X2 333 aa5.06□□□□□ -1.6
SCN1A-212ENST00000636194 SHANK3Q9BYB0 1731 aa5.06□□□□□ -1.6
SCN1A-212ENST00000636194 IGHV3-35A0A0C4DH35 117 aa5.06□□□□□ -1.6
SCN1A-212ENST00000636194 TIMM23O14925 209 aa5.06□□□□□ -1.6
SCN1A-212ENST00000636194 PSPNO60542 156 aa5.06□□□□□ -1.6
SCN1A-212ENST00000636194 FSTP19883 344 aa5.06□□□□□ -1.6
SCN1A-212ENST00000636194 SUPT4H1P63272 117 aaKnown RBP5.06□□□□□ -1.6
SCN1A-212ENST00000636194 DEFB105AQ8NG35 78 aa5.06□□□□□ -1.6
SCN1A-212ENST00000636194 IFI27L1Q96BM0 104 aa5.06□□□□□ -1.6
SCN1A-212ENST00000636194 TIMM17AQ99595 171 aa5.06□□□□□ -1.6
SCN1A-212ENST00000636194 TLN2Q9Y4G6 2542 aa5.06□□□□□ -1.6
SCN1A-212ENST00000636194 PTPRBP23467 1997 aa5.06□□□□□ -1.6
SCN1A-212ENST00000636194 TRAV12-2A0A075B6T6 113 aa5.06□□□□□ -1.6
SCN1A-212ENST00000636194 GRIFINA4D1Z8 144 aa5.06□□□□□ -1.6
SCN1A-212ENST00000636194 F5H768 121 aa5.06□□□□□ -1.6
SCN1A-212ENST00000636194 KLF14Q8TD94 323 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-212ENST00000636194 IMMP2LQ96T52 175 aa5.06□□□□□ -1.6
SCN1A-212ENST00000636194 NOTCH2Q04721 2471 aa5.06□□□□□ -1.6
SCN1A-212ENST00000636194 TRAV13-2A0A0B4J235 113 aa5.06□□□□□ -1.6
SCN1A-212ENST00000636194 TMEM144Q7Z5S9 345 aa5.06□□□□□ -1.6
SCN1A-212ENST00000636194 C1orf159Q96HA4 380 aa5.06□□□□□ -1.6
SCN1A-212ENST00000636194 MRM2Q9UI43 246 aaKnown RBP5.06□□□□□ -1.6
SCN1A-212ENST00000636194 Q6ZT83 130 aa5.06□□□□□ -1.6
SCN1A-212ENST00000636194 SCRT2Q9NQ03 307 aa5.06□□□□□ -1.6
SCN1A-212ENST00000636194 SLURP2P0DP57 97 aa5.06□□□□□ -1.6
SCN1A-212ENST00000636194 BSPH1Q075Z2 132 aa5.06□□□□□ -1.6
SCN1A-212ENST00000636194 KIR2DL5BA0A0G2JN68 375 aa5.06□□□□□ -1.6
SCN1A-212ENST00000636194 KIR2DL5BA0A0G2JPC4 375 aa5.06□□□□□ -1.6
SCN1A-212ENST00000636194 CCL3P10147 92 aa5.06□□□□□ -1.6
SCN1A-212ENST00000636194 CCL3L1P16619 93 aa5.06□□□□□ -1.6
SCN1A-212ENST00000636194 MUC21Q5SSG8 566 aa5.06□□□□□ -1.6
SCN1A-212ENST00000636194 KIR2DL5AQ8N109 375 aa5.06□□□□□ -1.6
SCN1A-212ENST00000636194 KIR2DL5BQ8NHK3 375 aa5.06□□□□□ -1.6
SCN1A-212ENST00000636194 AQP3Q92482 292 aa5.06□□□□□ -1.6
SCN1A-212ENST00000636194 SPANXB1Q9NS25 103 aaPredicted RBP5.06□□□□□ -1.6
SCN1A-212ENST00000636194 PILRAQ9UKJ1 303 aa5.06□□□□□ -1.6
SCN1A-212ENST00000636194 PLXNA4Q9HCM2 1894 aa5.05□□□□□ -1.6
SCN1A-212ENST00000636194 A8MXK9 166 aa5.05□□□□□ -1.6
SCN1A-212ENST00000636194 TMEM187Q14656 261 aa5.05□□□□□ -1.6
SCN1A-212ENST00000636194 LINC00312Q9Y6C7 94 aa5.05□□□□□ -1.6
SCN1A-212ENST00000636194 NUP210LQ5VU65 1888 aa5.05□□□□□ -1.6
SCN1A-212ENST00000636194 C19orf48Q6RUI8 117 aa5.05□□□□□ -1.6
SCN1A-212ENST00000636194 LY6G5BQ8NDX9 201 aa5.05□□□□□ -1.6
SCN1A-212ENST00000636194 SPAARA0A1B0GVQ0 90 aa5.05□□□□□ -1.6
SCN1A-212ENST00000636194 SRRM4A7MD48 611 aaKnown RBP5.05□□□□□ -1.6
SCN1A-212ENST00000636194 RHODO00212 210 aa5.05□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 84.4 ms