RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 FABP4P15090 132 aa11.21□□□□□ -0.62
CLN3-242ENST00000635958 GPX4P36969 197 aaPredicted RBP11.21□□□□□ -0.62
CLN3-242ENST00000635958 ZDHHC16Q969W1 377 aa11.21□□□□□ -0.62
CLN3-242ENST00000635958 HIST1H2BLQ99880 126 aa11.21□□□□□ -0.62
CLN3-242ENST00000635958 KCNIP2Q9NS61 270 aa11.21□□□□□ -0.62
CLN3-242ENST00000635958 MOB4Q9Y3A3 225 aa11.21□□□□□ -0.62
CLN3-242ENST00000635958 PMS2P5A8MQ11 134 aa11.2□□□□□ -0.62
CLN3-242ENST00000635958 AMY1AP04745 511 aa11.2□□□□□ -0.62
CLN3-242ENST00000635958 MDKP21741 143 aaPredicted RBP11.2□□□□□ -0.62
CLN3-242ENST00000635958 ELLP55199 621 aaPredicted RBP11.2□□□□□ -0.62
CLN3-242ENST00000635958 FFAR4Q5NUL3 377 aa11.2□□□□□ -0.62
CLN3-242ENST00000635958 ZNF600Q6ZNG1 722 aa11.2□□□□□ -0.62
CLN3-242ENST00000635958 C5orf56Q8N8D9 126 aa11.2□□□□□ -0.62
CLN3-242ENST00000635958 SSMEM1Q8WWF3 244 aa11.2□□□□□ -0.62
CLN3-242ENST00000635958 M0QZK8 103 aa11.19□□□□□ -0.62
CLN3-242ENST00000635958 CA2P00918 260 aa11.19□□□□□ -0.62
CLN3-242ENST00000635958 RPL27AP46776 148 aaKnown RBP11.19□□□□□ -0.62
CLN3-242ENST00000635958 CX3CL1P78423 397 aa11.19□□□□□ -0.62
CLN3-242ENST00000635958 TNXAQ16473 311 aa11.19□□□□□ -0.62
CLN3-242ENST00000635958 C10orf55Q5SWW7 151 aa11.19□□□□□ -0.62
CLN3-242ENST00000635958 OR8G2PQ6IF36 304 aa11.19□□□□□ -0.62
CLN3-242ENST00000635958 SSX7Q7RTT5 188 aa11.19□□□□□ -0.62
CLN3-242ENST00000635958 TMEM219Q86XT9 240 aa11.19□□□□□ -0.62
CLN3-242ENST00000635958 RAB24Q969Q5 203 aa11.19□□□□□ -0.62
CLN3-242ENST00000635958 RASL11BQ9BPW5 248 aa11.19□□□□□ -0.62
CLN3-242ENST00000635958 SRSF8Q9BRL6 282 aaKnown RBP11.19□□□□□ -0.62
CLN3-242ENST00000635958 PARLQ9H300 379 aa11.19□□□□□ -0.62
CLN3-242ENST00000635958 C2CD3Q4AC94 2353 aa11.19□□□□□ -0.62
CLN3-242ENST00000635958 A0A1W2PN81 502 aa11.19□□□□□ -0.62
CLN3-242ENST00000635958 DDTP30046 118 aa11.19□□□□□ -0.62
CLN3-242ENST00000635958 CHRNA7P36544 502 aa11.19□□□□□ -0.62
CLN3-242ENST00000635958 SCGB2A2Q13296 93 aa11.19□□□□□ -0.62
CLN3-242ENST00000635958 LY6EQ16553 131 aa11.19□□□□□ -0.62
CLN3-242ENST00000635958 SPINK9Q5DT21 86 aa11.19□□□□□ -0.62
CLN3-242ENST00000635958 TMEM86BQ8N661 226 aa11.19□□□□□ -0.62
CLN3-242ENST00000635958 TMEM18Q96B42 140 aa11.19□□□□□ -0.62
CLN3-242ENST00000635958 PLEKHA3Q9HB20 300 aa11.19□□□□□ -0.62
CLN3-242ENST00000635958 CDC42EP3Q9UKI2 254 aa11.19□□□□□ -0.62
CLN3-242ENST00000635958 ZFHX3Q15911 3703 aa11.18□□□□□ -0.62
CLN3-242ENST00000635958 SETD2Q9BYW2 2564 aaPredicted RBP11.18□□□□□ -0.62
CLN3-242ENST00000635958 TRAV9-1A0A075B6T8 112 aa11.18□□□□□ -0.62
CLN3-242ENST00000635958 ATP5IP56385 69 aaPredicted RBP11.18□□□□□ -0.62
CLN3-242ENST00000635958 FXYD3Q14802 87 aa11.18□□□□□ -0.62
CLN3-242ENST00000635958 ACSM6Q6P461 480 aa11.18□□□□□ -0.62
CLN3-242ENST00000635958 OR4F5Q8NH21 305 aa11.18□□□□□ -0.62
CLN3-242ENST00000635958 SRSF12Q8WXF0 261 aaKnown RBP11.18□□□□□ -0.62
CLN3-242ENST00000635958 OR4F4Q96R69 305 aa11.18□□□□□ -0.62
CLN3-242ENST00000635958 NPCDR1Q9BY65 106 aa11.18□□□□□ -0.62
CLN3-242ENST00000635958 HEYLQ9NQ87 328 aaPredicted RBP11.18□□□□□ -0.62
CLN3-242ENST00000635958 IGHV7-81A0A0B4J1V7 117 aa11.17□□□□□ -0.62
CLN3-242ENST00000635958 IGLC7A0M8Q6 106 aa11.17□□□□□ -0.62
CLN3-242ENST00000635958 TEX22C9J3V5 150 aa11.17□□□□□ -0.62
CLN3-242ENST00000635958 CDC34P49427 236 aaPredicted RBP11.17□□□□□ -0.62
CLN3-242ENST00000635958 C9orf152Q5JTZ5 239 aa11.17□□□□□ -0.62
CLN3-242ENST00000635958 ACTL10Q5JWF8 245 aa11.17□□□□□ -0.62
CLN3-242ENST00000635958 SIGLECL1Q8N7X8 197 aa11.17□□□□□ -0.62
CLN3-242ENST00000635958 OR10W1Q8NGF6 305 aa11.17□□□□□ -0.62
CLN3-242ENST00000635958 HINT2Q9BX68 163 aa11.17□□□□□ -0.62
CLN3-242ENST00000635958 ENY2Q9NPA8 101 aa11.17□□□□□ -0.62
CLN3-242ENST00000635958 VPREB3Q9UKI3 123 aa11.17□□□□□ -0.62
CLN3-242ENST00000635958 WDR83OSQ9Y284 106 aa11.17□□□□□ -0.62
CLN3-242ENST00000635958 XKRY2A2RUG3 117 aa11.16□□□□□ -0.62
CLN3-242ENST00000635958 HOXA3O43365 443 aaPredicted RBP11.16□□□□□ -0.62
CLN3-242ENST00000635958 CNIH1O95406 144 aa11.16□□□□□ -0.62
CLN3-242ENST00000635958 RAB4BP61018 213 aa11.16□□□□□ -0.62
CLN3-242ENST00000635958 GNB1P62873 340 aa11.16□□□□□ -0.62
CLN3-242ENST00000635958 WT1-ASQ06250 92 aa11.16□□□□□ -0.62
CLN3-242ENST00000635958 FOXL1Q12952 345 aa11.16□□□□□ -0.62
CLN3-242ENST00000635958 GAMTQ14353 236 aa11.16□□□□□ -0.62
CLN3-242ENST00000635958 GFI1BQ5VTD9 330 aa11.16□□□□□ -0.62
CLN3-242ENST00000635958 RPUSD4Q96CM3 377 aaKnown RBP11.16□□□□□ -0.62
CLN3-242ENST00000635958 C14orf144Q96I85 54 aa11.16□□□□□ -0.62
CLN3-242ENST00000635958 NSD1Q96L73 2696 aaPredicted RBP11.16□□□□□ -0.62
CLN3-242ENST00000635958 EGR2P11161 476 aaPredicted RBP11.16□□□□□ -0.62
CLN3-242ENST00000635958 ERHP84090 104 aaKnown RBP11.16□□□□□ -0.62
CLN3-242ENST00000635958 MRPL41Q8IXM3 137 aaKnown RBP11.16□□□□□ -0.62
CLN3-242ENST00000635958 ARPC1AQ92747 370 aa11.16□□□□□ -0.62
CLN3-242ENST00000635958 NF1P21359 2839 aa11.15□□□□□ -0.62
CLN3-242ENST00000635958 C15orf62A8K5M9 175 aa11.15□□□□□ -0.62
CLN3-242ENST00000635958 AMBPP02760 352 aa11.15□□□□□ -0.62
CLN3-242ENST00000635958 OPRK1P41145 380 aa11.15□□□□□ -0.62
CLN3-242ENST00000635958 NDPQ00604 133 aa11.15□□□□□ -0.62
CLN3-242ENST00000635958 HSPB9Q9BQS6 159 aa11.15□□□□□ -0.62
CLN3-242ENST00000635958 GSX1Q9H4S2 264 aaPredicted RBP11.15□□□□□ -0.62
CLN3-242ENST00000635958 SLC25A22Q9H936 323 aa11.15□□□□□ -0.62
CLN3-242ENST00000635958 A0A1W2PPV4 95 aa11.14□□□□□ -0.63
CLN3-242ENST00000635958 C11orf94C9JXX5 98 aa11.14□□□□□ -0.63
CLN3-242ENST00000635958 PAGE4O60829 102 aa11.14□□□□□ -0.63
CLN3-242ENST00000635958 SRD5A1P18405 259 aa11.14□□□□□ -0.63
CLN3-242ENST00000635958 C2orf83Q53S99 150 aa11.14□□□□□ -0.63
CLN3-242ENST00000635958 PVRIGQ6DKI7 326 aa11.14□□□□□ -0.63
CLN3-242ENST00000635958 ZNF114Q8NC26 417 aa11.14□□□□□ -0.63
CLN3-242ENST00000635958 SLC24A4Q8NFF2 622 aa11.14□□□□□ -0.63
CLN3-242ENST00000635958 C2orf88Q9BSF0 95 aa11.14□□□□□ -0.63
CLN3-242ENST00000635958 MT-CO2P00403 227 aa11.14□□□□□ -0.63
CLN3-242ENST00000635958 IGHG2P01859 326 aa11.14□□□□□ -0.63
CLN3-242ENST00000635958 RNASE2P10153 161 aaKnown RBP11.14□□□□□ -0.63
CLN3-242ENST00000635958 CRIP2P52943 208 aaPredicted RBP11.14□□□□□ -0.63
CLN3-242ENST00000635958 RPL19P84098 196 aaKnown RBP11.14□□□□□ -0.63
CLN3-242ENST00000635958 IQCJQ1A5X6 159 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms