RNA–Protein interactions for RNA: ENST00000631420.1

LIMS3-206, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best)

Gene LIMS3, Length 1,580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-206ENST00000631420 PRR20AP86496 221 aa11.34□□□□□ -0.59
LIMS3-206ENST00000631420 ZNF616Q08AN1 781 aa11.34□□□□□ -0.59
LIMS3-206ENST00000631420 NDUFA11Q86Y39 141 aa11.34□□□□□ -0.59
LIMS3-206ENST00000631420 ZNF709Q8N972 641 aa11.34□□□□□ -0.59
LIMS3-206ENST00000631420 RAX2Q96IS3 184 aa11.34□□□□□ -0.59
LIMS3-206ENST00000631420 PUS1Q9Y606 427 aaKnown RBP eCLIP11.34□□□□□ -0.59
LIMS3-206ENST00000631420 PXMP4Q9Y6I8 212 aa11.34□□□□□ -0.59
LIMS3-206ENST00000631420 FAM209BQ5JX69 171 aa11.33□□□□□ -0.6
LIMS3-206ENST00000631420 TOMM20LQ6UXN7 152 aa11.33□□□□□ -0.6
LIMS3-206ENST00000631420 ZNF600Q6ZNG1 722 aa11.33□□□□□ -0.6
LIMS3-206ENST00000631420 STPG3Q8N7X2 389 aa11.33□□□□□ -0.6
LIMS3-206ENST00000631420 Q8WTZ3 238 aa11.33□□□□□ -0.6
LIMS3-206ENST00000631420 RCC1LQ96I51 464 aaKnown RBP11.33□□□□□ -0.6
LIMS3-206ENST00000631420 TENM1Q9UKZ4 2725 aa11.33□□□□□ -0.6
LIMS3-206ENST00000631420 C17orf112F2Z3M2 114 aa11.33□□□□□ -0.6
LIMS3-206ENST00000631420 LINC01619G3V211 115 aa11.33□□□□□ -0.6
LIMS3-206ENST00000631420 YIF1AO95070 293 aa11.33□□□□□ -0.6
LIMS3-206ENST00000631420 SPP1P10451 314 aa11.33□□□□□ -0.6
LIMS3-206ENST00000631420 SLURP1P55000 103 aa11.33□□□□□ -0.6
LIMS3-206ENST00000631420 B2MP61769 119 aa11.33□□□□□ -0.6
LIMS3-206ENST00000631420 EIF5AP63241 154 aaKnown RBP11.33□□□□□ -0.6
LIMS3-206ENST00000631420 GCSAMLQ5JQS6 135 aa11.33□□□□□ -0.6
LIMS3-206ENST00000631420 UNQ9165/PRO28630Q6UXU0 137 aa11.33□□□□□ -0.6
LIMS3-206ENST00000631420 C12orf54Q6X4T0 127 aa11.33□□□□□ -0.6
LIMS3-206ENST00000631420 OR51G1Q8NGK1 321 aa11.33□□□□□ -0.6
LIMS3-206ENST00000631420 OR2G3Q8NGZ4 309 aa11.33□□□□□ -0.6
LIMS3-206ENST00000631420 DPF1Q92782 380 aa11.33□□□□□ -0.6
LIMS3-206ENST00000631420 GNPNAT1Q96EK6 184 aaPredicted RBP11.33□□□□□ -0.6
LIMS3-206ENST00000631420 MDFIQ99750 246 aa11.33□□□□□ -0.6
LIMS3-206ENST00000631420 ZNF747Q9BV97 191 aa11.33□□□□□ -0.6
LIMS3-206ENST00000631420 VSIRQ9H7M9 311 aa11.33□□□□□ -0.6
LIMS3-206ENST00000631420 SLC39A9Q9NUM3 307 aa11.33□□□□□ -0.6
LIMS3-206ENST00000631420 DOK5Q9P104 306 aa11.33□□□□□ -0.6
LIMS3-206ENST00000631420 TIMM9Q9Y5J7 89 aa11.33□□□□□ -0.6
LIMS3-206ENST00000631420 CCL24O00175 119 aa11.32□□□□□ -0.6
LIMS3-206ENST00000631420 SCGB2A1O75556 95 aa11.32□□□□□ -0.6
LIMS3-206ENST00000631420 IL4P05112 153 aa11.32□□□□□ -0.6
LIMS3-206ENST00000631420 HOXD3P31249 432 aaPredicted RBP11.32□□□□□ -0.6
LIMS3-206ENST00000631420 ELLP55199 621 aaPredicted RBP11.32□□□□□ -0.6
LIMS3-206ENST00000631420 SELENOTP62341 195 aa11.32□□□□□ -0.6
LIMS3-206ENST00000631420 RELQ04864 619 aaPredicted RBP11.32□□□□□ -0.6
LIMS3-206ENST00000631420 RPEL1Q2QD12 228 aa11.32□□□□□ -0.6
LIMS3-206ENST00000631420 FFAR4Q5NUL3 377 aa11.32□□□□□ -0.6
LIMS3-206ENST00000631420 TMED6Q8WW62 240 aa11.32□□□□□ -0.6
LIMS3-206ENST00000631420 PSMG3Q9BT73 122 aaPredicted RBP11.32□□□□□ -0.6
LIMS3-206ENST00000631420 ZFAND3Q9H8U3 227 aa11.32□□□□□ -0.6
LIMS3-206ENST00000631420 WI2-2373I1.2A0A1W2PRP0 233 aa11.31□□□□□ -0.6
LIMS3-206ENST00000631420 ZNF320A2RRD8 509 aa11.31□□□□□ -0.6
LIMS3-206ENST00000631420 TSPAN15O95858 294 aa11.31□□□□□ -0.6
LIMS3-206ENST00000631420 FABP1P07148 127 aa11.31□□□□□ -0.6
LIMS3-206ENST00000631420 ORM2P19652 201 aa11.31□□□□□ -0.6
LIMS3-206ENST00000631420 LYZP61626 148 aa11.31□□□□□ -0.6
LIMS3-206ENST00000631420 USF2Q15853 346 aaPredicted RBP11.31□□□□□ -0.6
LIMS3-206ENST00000631420 PATE2Q6UY27 113 aa11.31□□□□□ -0.6
LIMS3-206ENST00000631420 GPHB5Q86YW7 130 aa11.31□□□□□ -0.6
LIMS3-206ENST00000631420 C3orf56Q8N813 242 aa11.31□□□□□ -0.6
LIMS3-206ENST00000631420 PBDC1Q9BVG4 233 aa11.31□□□□□ -0.6
LIMS3-206ENST00000631420 NDUFA4O00483 81 aa11.3□□□□□ -0.6
LIMS3-206ENST00000631420 ZNF207O43670 478 aaKnown RBP11.3□□□□□ -0.6
LIMS3-206ENST00000631420 SEC11BP0C7V7 166 aa11.3□□□□□ -0.6
LIMS3-206ENST00000631420 SYNJ2BPP57105 145 aa11.3□□□□□ -0.6
LIMS3-206ENST00000631420 KLF5Q13887 457 aaPredicted RBP11.3□□□□□ -0.6
LIMS3-206ENST00000631420 Q6ZRG5 221 aa11.3□□□□□ -0.6
LIMS3-206ENST00000631420 OR1B1Q8NGR6 318 aa11.3□□□□□ -0.6
LIMS3-206ENST00000631420 TMEM37Q8WXS4 190 aa11.3□□□□□ -0.6
LIMS3-206ENST00000631420 RNF125Q96EQ8 232 aa11.3□□□□□ -0.6
LIMS3-206ENST00000631420 C20orf24Q9BUV8 137 aa11.3□□□□□ -0.6
LIMS3-206ENST00000631420 ZP3P21754 424 aa11.29□□□□□ -0.6
LIMS3-206ENST00000631420 PLP1P60201 277 aa11.29□□□□□ -0.6
LIMS3-206ENST00000631420 RAB2AP61019 212 aa11.29□□□□□ -0.6
LIMS3-206ENST00000631420 SERF2P84101 59 aa11.29□□□□□ -0.6
LIMS3-206ENST00000631420 FHL3Q13643 280 aa11.29□□□□□ -0.6
LIMS3-206ENST00000631420 FAM106AQ4KMX7 169 aa11.29□□□□□ -0.6
LIMS3-206ENST00000631420 ALKAL2Q6UX46 152 aa11.29□□□□□ -0.6
LIMS3-206ENST00000631420 DLX4Q92988 240 aaPredicted RBP11.29□□□□□ -0.6
LIMS3-206ENST00000631420 EIF3GO75821 320 aaKnown RBP eCLIP11.28□□□□□ -0.6
LIMS3-206ENST00000631420 OR5G3P0C626 314 aa11.28□□□□□ -0.6
LIMS3-206ENST00000631420 EDN2P20800 178 aa11.28□□□□□ -0.6
LIMS3-206ENST00000631420 TM4SF20Q53R12 229 aa11.28□□□□□ -0.6
LIMS3-206ENST00000631420 FAM74A1Q5RGS3 127 aa11.28□□□□□ -0.6
LIMS3-206ENST00000631420 KCNIP2Q9NS61 270 aa11.28□□□□□ -0.6
LIMS3-206ENST00000631420 RPRMQ9NS64 109 aa11.28□□□□□ -0.6
LIMS3-206ENST00000631420 MRPL27Q9P0M9 148 aaKnown RBP11.28□□□□□ -0.6
LIMS3-206ENST00000631420 HYPMO75409 117 aa11.28□□□□□ -0.6
LIMS3-206ENST00000631420 MYCNOSP40205 109 aa11.28□□□□□ -0.6
LIMS3-206ENST00000631420 IFITM2Q01629 132 aa11.28□□□□□ -0.6
LIMS3-206ENST00000631420 SPATA31B1PQ5VZV4 182 aa11.28□□□□□ -0.6
LIMS3-206ENST00000631420 TEX261Q6UWH6 196 aa11.28□□□□□ -0.6
LIMS3-206ENST00000631420 TMEM190Q8WZ59 177 aa11.28□□□□□ -0.6
LIMS3-206ENST00000631420 UHRF2Q96PU4 802 aa11.28□□□□□ -0.6
LIMS3-206ENST00000631420 DNAJC4Q9NNZ3 241 aa11.28□□□□□ -0.6
LIMS3-206ENST00000631420 COL6A5A8TX70 2615 aa11.27□□□□□ -0.6
LIMS3-206ENST00000631420 IGHV3-49A0A0A0MS15 119 aa11.27□□□□□ -0.61
LIMS3-206ENST00000631420 COX7A2P2O60397 106 aa11.27□□□□□ -0.61
LIMS3-206ENST00000631420 APOHP02749 345 aaPredicted RBP11.27□□□□□ -0.61
LIMS3-206ENST00000631420 M6PRP20645 277 aa11.27□□□□□ -0.61
LIMS3-206ENST00000631420 FHITP49789 147 aa11.27□□□□□ -0.61
LIMS3-206ENST00000631420 ACOT6Q3I5F7 207 aaPredicted RBP11.27□□□□□ -0.61
LIMS3-206ENST00000631420 MORN5Q5VZ52 161 aa11.27□□□□□ -0.61
LIMS3-206ENST00000631420 RPP25LQ8N5L8 163 aaKnown RBP11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 114.2 ms