RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 OR2J3O76001 311 aa10.21□□□□□ -0.78
LINC00540-203ENST00000631321 GP9P14770 177 aa10.21□□□□□ -0.78
LINC00540-203ENST00000631321 CA7P43166 264 aa10.21□□□□□ -0.78
LINC00540-203ENST00000631321 KLF5Q13887 457 aaPredicted RBP10.21□□□□□ -0.78
LINC00540-203ENST00000631321 TNXAQ16473 311 aa10.21□□□□□ -0.78
LINC00540-203ENST00000631321 ATP5L2Q7Z4Y8 100 aa10.21□□□□□ -0.78
LINC00540-203ENST00000631321 TEX22C9J3V5 150 aa10.2□□□□□ -0.78
LINC00540-203ENST00000631321 RBP4P02753 201 aa10.2□□□□□ -0.78
LINC00540-203ENST00000631321 SLC25A5P05141 298 aaKnown RBP10.2□□□□□ -0.78
LINC00540-203ENST00000631321 NBEAP1P0C6P0 100 aa10.2□□□□□ -0.78
LINC00540-203ENST00000631321 CNTFRP26992 372 aa10.2□□□□□ -0.78
LINC00540-203ENST00000631321 UBE2G1P62253 170 aa10.2□□□□□ -0.78
LINC00540-203ENST00000631321 NIT1Q86X76 327 aa10.2□□□□□ -0.78
LINC00540-203ENST00000631321 SPACA3Q8IXA5 215 aa10.2□□□□□ -0.78
LINC00540-203ENST00000631321 OR4B1Q8NGF8 309 aa10.2□□□□□ -0.78
LINC00540-203ENST00000631321 C8orf46Q8TAG6 207 aa10.2□□□□□ -0.78
LINC00540-203ENST00000631321 C18orf32Q8TCD1 76 aa10.2□□□□□ -0.78
LINC00540-203ENST00000631321 GPR82Q96P67 336 aa10.2□□□□□ -0.78
LINC00540-203ENST00000631321 FAM103A1Q9BTL3 118 aaKnown RBP10.2□□□□□ -0.78
LINC00540-203ENST00000631321 F11RQ9Y624 299 aaKnown RBP10.2□□□□□ -0.78
LINC00540-203ENST00000631321 AKAP13Q12802 2813 aa10.2□□□□□ -0.78
LINC00540-203ENST00000631321 ANKRD11Q6UB99 2663 aaPredicted RBP10.2□□□□□ -0.78
LINC00540-203ENST00000631321 MAP1BP46821 2468 aaKnown RBP10.19□□□□□ -0.78
LINC00540-203ENST00000631321 IGHV1-3A0A0C4DH29 117 aa10.19□□□□□ -0.78
LINC00540-203ENST00000631321 A0A1B0GXF2 115 aa10.19□□□□□ -0.78
LINC00540-203ENST00000631321 PGPA6NDG6 321 aa10.19□□□□□ -0.78
LINC00540-203ENST00000631321 DIRC3C9JPN6 131 aa10.19□□□□□ -0.78
LINC00540-203ENST00000631321 BUB1B-PAK6H3BSN5 160 aa10.19□□□□□ -0.78
LINC00540-203ENST00000631321 TCAPO15273 167 aa10.19□□□□□ -0.78
LINC00540-203ENST00000631321 KRTDAPP60985 99 aa10.19□□□□□ -0.78
LINC00540-203ENST00000631321 C5orf17Q8NAS9 161 aa10.19□□□□□ -0.78
LINC00540-203ENST00000631321 TMEM68Q96MH6 324 aa10.19□□□□□ -0.78
LINC00540-203ENST00000631321 ATG101Q9BSB4 218 aa10.19□□□□□ -0.78
LINC00540-203ENST00000631321 PAM16Q9Y3D7 125 aa10.19□□□□□ -0.78
LINC00540-203ENST00000631321 TOMM40O96008 361 aa10.19□□□□□ -0.78
LINC00540-203ENST00000631321 CT83Q5H943 113 aa10.19□□□□□ -0.78
LINC00540-203ENST00000631321 ASPHD1Q5U4P2 390 aa10.19□□□□□ -0.78
LINC00540-203ENST00000631321 ZNF705AQ6ZN79 300 aaPredicted RBP10.19□□□□□ -0.78
LINC00540-203ENST00000631321 FMC1Q96HJ9 113 aa10.19□□□□□ -0.78
LINC00540-203ENST00000631321 CLEC7AQ9BXN2 247 aa10.19□□□□□ -0.78
LINC00540-203ENST00000631321 PRSS22Q9GZN4 317 aa10.19□□□□□ -0.78
LINC00540-203ENST00000631321 ZNF492Q9P255 531 aa10.19□□□□□ -0.78
LINC00540-203ENST00000631321 LTAP01374 205 aa10.18□□□□□ -0.78
LINC00540-203ENST00000631321 PMCHP20382 165 aa10.18□□□□□ -0.78
LINC00540-203ENST00000631321 CTRLP40313 264 aa10.18□□□□□ -0.78
LINC00540-203ENST00000631321 C19orf35Q6ZS72 473 aa10.18□□□□□ -0.78
LINC00540-203ENST00000631321 PPP1R27Q86WC6 154 aa10.18□□□□□ -0.78
LINC00540-203ENST00000631321 BLNKQ8WV28 456 aa10.18□□□□□ -0.78
LINC00540-203ENST00000631321 RNF5Q99942 180 aa10.18□□□□□ -0.78
LINC00540-203ENST00000631321 INSIG2Q9Y5U4 225 aa10.18□□□□□ -0.78
LINC00540-203ENST00000631321 HIGD1CA8MV81 97 aa10.18□□□□□ -0.78
LINC00540-203ENST00000631321 CD3EP07766 207 aa10.18□□□□□ -0.78
LINC00540-203ENST00000631321 C19orf71A6NCJ1 209 aa10.17□□□□□ -0.78
LINC00540-203ENST00000631321 VWC2LB2RUY7 222 aa10.17□□□□□ -0.78
LINC00540-203ENST00000631321 NBL1P41271 181 aa10.17□□□□□ -0.78
LINC00540-203ENST00000631321 PRR30Q53SZ7 412 aaPredicted RBP10.17□□□□□ -0.78
LINC00540-203ENST00000631321 PRR27Q6MZM9 219 aa10.17□□□□□ -0.78
LINC00540-203ENST00000631321 ZGRF1Q86YA3 2104 aa10.17□□□□□ -0.78
LINC00540-203ENST00000631321 TMEM190Q8WZ59 177 aa10.17□□□□□ -0.78
LINC00540-203ENST00000631321 RBM14Q96PK6 669 aaKnown RBP10.17□□□□□ -0.78
LINC00540-203ENST00000631321 VKORC1Q9BQB6 163 aa10.17□□□□□ -0.78
LINC00540-203ENST00000631321 SRSF8Q9BRL6 282 aaKnown RBP10.17□□□□□ -0.78
LINC00540-203ENST00000631321 ALKBH7Q9BT30 221 aaPredicted RBP10.17□□□□□ -0.78
LINC00540-203ENST00000631321 RPP21Q9H633 154 aaKnown RBP10.17□□□□□ -0.78
LINC00540-203ENST00000631321 TMEM14CQ9P0S9 112 aa10.17□□□□□ -0.78
LINC00540-203ENST00000631321 PKDREJQ9NTG1 2253 aa10.17□□□□□ -0.78
LINC00540-203ENST00000631321 ARFGEF3Q5TH69 2177 aa10.17□□□□□ -0.78
LINC00540-203ENST00000631321 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP10.17□□□□□ -0.78
LINC00540-203ENST00000631321 LY6LH3BQJ8 138 aa10.17□□□□□ -0.78
LINC00540-203ENST00000631321 TCRAP04437 139 aa10.17□□□□□ -0.78
LINC00540-203ENST00000631321 FAM87AP0C7U9 286 aa10.17□□□□□ -0.78
LINC00540-203ENST00000631321 C3orf79P0CE67 100 aa10.17□□□□□ -0.78
LINC00540-203ENST00000631321 IGLC1P0CG04 106 aa10.17□□□□□ -0.78
LINC00540-203ENST00000631321 MMDQ15546 238 aa10.17□□□□□ -0.78
LINC00540-203ENST00000631321 Q9H3A6 140 aa10.17□□□□□ -0.78
LINC00540-203ENST00000631321 HIGD1AQ9Y241 93 aa10.17□□□□□ -0.78
LINC00540-203ENST00000631321 RIF1Q5UIP0 2472 aaKnown RBP10.17□□□□□ -0.78
LINC00540-203ENST00000631321 I3L2K1 104 aa10.16□□□□□ -0.78
LINC00540-203ENST00000631321 DLX1P56177 255 aa10.16□□□□□ -0.78
LINC00540-203ENST00000631321 RBPJQ06330 500 aa10.16□□□□□ -0.78
LINC00540-203ENST00000631321 SOX21Q9Y651 276 aaPredicted RBP10.16□□□□□ -0.78
LINC00540-203ENST00000631321 LINC00322Q6ZN03 302 aaPredicted RBP10.16□□□□□ -0.78
LINC00540-203ENST00000631321 OTORQ9NRC9 128 aa10.16□□□□□ -0.78
LINC00540-203ENST00000631321 IGHV3-21A0A0B4J1V1 117 aa10.15□□□□□ -0.78
LINC00540-203ENST00000631321 A8MWL6 223 aa10.15□□□□□ -0.78
LINC00540-203ENST00000631321 HOXB4P17483 251 aaPredicted RBP10.15□□□□□ -0.78
LINC00540-203ENST00000631321 LHFPL4Q7Z7J7 247 aa10.15□□□□□ -0.78
LINC00540-203ENST00000631321 FAM19A2Q8N3H0 131 aa10.15□□□□□ -0.78
LINC00540-203ENST00000631321 SRSF12Q8WXF0 261 aaKnown RBP10.15□□□□□ -0.78
LINC00540-203ENST00000631321 GFRA4Q9GZZ7 299 aa10.15□□□□□ -0.78
LINC00540-203ENST00000631321 ACACAQ13085 2346 aa10.15□□□□□ -0.78
LINC00540-203ENST00000631321 PPIAL4CA0A0B4J2A2 164 aa10.15□□□□□ -0.79
LINC00540-203ENST00000631321 APELAP0DMC3 54 aa10.15□□□□□ -0.79
LINC00540-203ENST00000631321 PPIAL4GP0DN37 164 aa10.15□□□□□ -0.79
LINC00540-203ENST00000631321 PSG1P11464 419 aa10.15□□□□□ -0.79
LINC00540-203ENST00000631321 HBBP68871 147 aa10.15□□□□□ -0.79
LINC00540-203ENST00000631321 RPEQ96AT9 228 aa10.15□□□□□ -0.79
LINC00540-203ENST00000631321 FBXL15Q9H469 300 aa10.15□□□□□ -0.79
LINC00540-203ENST00000631321 GSX1Q9H4S2 264 aaPredicted RBP10.15□□□□□ -0.79
LINC00540-203ENST00000631321 PLXNB1O43157 2135 aa10.15□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms