RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 FCN2Q15485 313 aa13.65□□□□□ -0.22
CLN3-239ENST00000628023 LAMTOR1Q6IAA8 161 aa13.65□□□□□ -0.22
CLN3-239ENST00000628023 TMEM217Q8N7C4 229 aa13.65□□□□□ -0.22
CLN3-239ENST00000628023 THAP8Q8NA92 274 aa13.65□□□□□ -0.22
CLN3-239ENST00000628023 OR51G1Q8NGK1 321 aa13.65□□□□□ -0.22
CLN3-239ENST00000628023 RHPN1-AS1Q9BWJ2 59 aa13.65□□□□□ -0.22
CLN3-239ENST00000628023 TENM3Q9P273 2699 aa13.64□□□□□ -0.23
CLN3-239ENST00000628023 IGKV1D-37A0A075B6S9 117 aa13.64□□□□□ -0.23
CLN3-239ENST00000628023 PSG1P11464 419 aa13.64□□□□□ -0.23
CLN3-239ENST00000628023 CXCL3P19876 107 aa13.64□□□□□ -0.23
CLN3-239ENST00000628023 SULT1A1P50225 295 aa13.64□□□□□ -0.23
CLN3-239ENST00000628023 OR2F1Q13607 317 aa13.64□□□□□ -0.23
CLN3-239ENST00000628023 TMEM144Q7Z5S9 345 aa13.64□□□□□ -0.23
CLN3-239ENST00000628023 GTSCR1Q86UQ5 136 aa13.64□□□□□ -0.23
CLN3-239ENST00000628023 TMEM61Q8N0U2 210 aa13.64□□□□□ -0.23
CLN3-239ENST00000628023 LILRB2Q8N423 598 aa13.64□□□□□ -0.23
CLN3-239ENST00000628023 TMEM252Q8N6L7 170 aa13.64□□□□□ -0.23
CLN3-239ENST00000628023 WDR89Q96FK6 387 aaPredicted RBP13.64□□□□□ -0.23
CLN3-239ENST00000628023 PBDC1Q9BVG4 233 aa13.64□□□□□ -0.23
CLN3-239ENST00000628023 TMEM231Q9H6L2 316 aa13.64□□□□□ -0.23
CLN3-239ENST00000628023 OR5AC2Q9NZP5 309 aa13.64□□□□□ -0.23
CLN3-239ENST00000628023 IGHV3-66A0A0C4DH42 116 aa13.63□□□□□ -0.23
CLN3-239ENST00000628023 A0A1W2PS18 150 aa13.63□□□□□ -0.23
CLN3-239ENST00000628023 IGSF23A1L1A6 192 aa13.63□□□□□ -0.23
CLN3-239ENST00000628023 FNDC10F2Z333 226 aa13.63□□□□□ -0.23
CLN3-239ENST00000628023 CHEK1O14757 476 aa13.63□□□□□ -0.23
CLN3-239ENST00000628023 HNRNPCP07910 306 aaKnown RBP eCLIP13.63□□□□□ -0.23
CLN3-239ENST00000628023 LYZP61626 148 aa13.63□□□□□ -0.23
CLN3-239ENST00000628023 HBG1P69891 147 aa13.63□□□□□ -0.23
CLN3-239ENST00000628023 HBG2P69892 147 aa13.63□□□□□ -0.23
CLN3-239ENST00000628023 ARL16Q0P5N6 197 aa13.63□□□□□ -0.23
CLN3-239ENST00000628023 OR11H7Q8NGC8 314 aa13.63□□□□□ -0.23
CLN3-239ENST00000628023 ST8SIA2Q92186 375 aa13.63□□□□□ -0.23
CLN3-239ENST00000628023 RNF125Q96EQ8 232 aa13.63□□□□□ -0.23
CLN3-239ENST00000628023 GGACTQ9BVM4 153 aa13.63□□□□□ -0.23
CLN3-239ENST00000628023 SLC25A31Q9H0C2 315 aa13.63□□□□□ -0.23
CLN3-239ENST00000628023 RABAC1Q9UI14 185 aa13.63□□□□□ -0.23
CLN3-239ENST00000628023 IGKV1OR2-108A0A075B7D4 117 aa13.62□□□□□ -0.23
CLN3-239ENST00000628023 TRAV25A0A0B4J276 109 aa13.62□□□□□ -0.23
CLN3-239ENST00000628023 MPC2O95563 127 aa13.62□□□□□ -0.23
CLN3-239ENST00000628023 P2RY1P47900 373 aa13.62□□□□□ -0.23
CLN3-239ENST00000628023 GRAMD2BQ96HH9 432 aa13.62□□□□□ -0.23
CLN3-239ENST00000628023 NPVFQ9HCQ7 196 aa13.62□□□□□ -0.23
CLN3-239ENST00000628023 H0YIZ8 118 aa13.61□□□□□ -0.23
CLN3-239ENST00000628023 APOHP02749 345 aaPredicted RBP13.61□□□□□ -0.23
CLN3-239ENST00000628023 USF2Q15853 346 aaPredicted RBP13.61□□□□□ -0.23
CLN3-239ENST00000628023 BPIFCQ8NFQ6 507 aa13.61□□□□□ -0.23
CLN3-239ENST00000628023 RNF2Q99496 336 aa13.61□□□□□ -0.23
CLN3-239ENST00000628023 CFDP00746 253 aaPredicted RBP13.6□□□□□ -0.23
CLN3-239ENST00000628023 CRYBB3P26998 211 aa13.6□□□□□ -0.23
CLN3-239ENST00000628023 S100A11P31949 105 aa13.6□□□□□ -0.23
CLN3-239ENST00000628023 CD81P60033 236 aa13.6□□□□□ -0.23
CLN3-239ENST00000628023 RPL11P62913 178 aaKnown RBP13.6□□□□□ -0.23
CLN3-239ENST00000628023 EWSR1Q01844 656 aaKnown RBP eCLIP13.6□□□□□ -0.23
CLN3-239ENST00000628023 TEPPQ6URK8 271 aa13.6□□□□□ -0.23
CLN3-239ENST00000628023 CYP2G1PQ6ZSU1 146 aa13.6□□□□□ -0.23
CLN3-239ENST00000628023 TCF24Q7RTU0 167 aa13.6□□□□□ -0.23
CLN3-239ENST00000628023 THAP6Q8TBB0 222 aa13.6□□□□□ -0.23
CLN3-239ENST00000628023 PPP1R14BQ96C90 147 aa13.6□□□□□ -0.23
CLN3-239ENST00000628023 SPAG8Q99932 426 aaPredicted RBP13.6□□□□□ -0.23
CLN3-239ENST00000628023 TMEM147Q9BVK8 224 aa13.6□□□□□ -0.23
CLN3-239ENST00000628023 VSIRQ9H7M9 311 aa13.6□□□□□ -0.23
CLN3-239ENST00000628023 UQCC1Q9NVA1 299 aa13.6□□□□□ -0.23
CLN3-239ENST00000628023 MBD2Q9UBB5 411 aa13.6□□□□□ -0.23
CLN3-239ENST00000628023 PFDN2Q9UHV9 154 aa13.6□□□□□ -0.23
CLN3-239ENST00000628023 U3KQK5 164 aa13.6□□□□□ -0.23
CLN3-239ENST00000628023 IGKV3-7A0A075B6H7 116 aa13.59□□□□□ -0.23
CLN3-239ENST00000628023 UBE2L5PA0A1B0GUS4 154 aa13.59□□□□□ -0.23
CLN3-239ENST00000628023 ZNF785A8K8V0 405 aa13.59□□□□□ -0.23
CLN3-239ENST00000628023 CD5P06127 495 aa13.59□□□□□ -0.23
CLN3-239ENST00000628023 EIF2B2P49770 351 aaKnown RBP13.59□□□□□ -0.23
CLN3-239ENST00000628023 LSM4Q9Y4Z0 139 aaKnown RBP13.59□□□□□ -0.23
CLN3-239ENST00000628023 SMAD5-AS1Q9Y6J3 95 aa13.59□□□□□ -0.23
CLN3-239ENST00000628023 TSPAN4O14817 238 aa13.58□□□□□ -0.24
CLN3-239ENST00000628023 GIPP09681 153 aaPredicted RBP13.58□□□□□ -0.24
CLN3-239ENST00000628023 GATA2P23769 480 aaPredicted RBP13.58□□□□□ -0.24
CLN3-239ENST00000628023 NUP62P37198 522 aaPredicted RBP13.58□□□□□ -0.24
CLN3-239ENST00000628023 BAXQ07812 192 aa13.58□□□□□ -0.24
CLN3-239ENST00000628023 RAB31Q13636 194 aa13.58□□□□□ -0.24
CLN3-239ENST00000628023 ZNF546Q86UE3 836 aa13.58□□□□□ -0.24
CLN3-239ENST00000628023 ASB13Q8WXK3 278 aa13.58□□□□□ -0.24
CLN3-239ENST00000628023 NEURL2Q9BR09 285 aa13.58□□□□□ -0.24
CLN3-239ENST00000628023 DFFBO76075 338 aa13.57□□□□□ -0.24
CLN3-239ENST00000628023 LINC00869P0C866 280 aa13.57□□□□□ -0.24
CLN3-239ENST00000628023 ORM2P19652 201 aa13.57□□□□□ -0.24
CLN3-239ENST00000628023 TFPI2P48307 235 aa13.57□□□□□ -0.24
CLN3-239ENST00000628023 SELENOTP62341 195 aa13.57□□□□□ -0.24
CLN3-239ENST00000628023 PAFAH1B2P68402 229 aa13.57□□□□□ -0.24
CLN3-239ENST00000628023 NHLH2Q02577 135 aa13.57□□□□□ -0.24
CLN3-239ENST00000628023 ATP6V1FQ16864 119 aa13.57□□□□□ -0.24
CLN3-239ENST00000628023 OR5C1Q8NGR4 320 aa13.57□□□□□ -0.24
CLN3-239ENST00000628023 OR1B1Q8NGR6 318 aa13.57□□□□□ -0.24
CLN3-239ENST00000628023 RNF126Q9BV68 326 aa13.57□□□□□ -0.24
CLN3-239ENST00000628023 OR4C46A6NHA9 309 aa13.56□□□□□ -0.24
CLN3-239ENST00000628023 DNASE2O00115 360 aaPredicted RBP13.56□□□□□ -0.24
CLN3-239ENST00000628023 CD7P09564 240 aa13.56□□□□□ -0.24
CLN3-239ENST00000628023 S100A7P31151 101 aa13.56□□□□□ -0.24
CLN3-239ENST00000628023 RAP2BP61225 183 aa13.56□□□□□ -0.24
CLN3-239ENST00000628023 FGL1Q08830 312 aa13.56□□□□□ -0.24
CLN3-239ENST00000628023 CLINT1Q14677 625 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms