RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 GABARAPH6UMI1 98 aa17.01■□□□□ 0.31
CPSF1-214ENST00000622776 GABARAPO95166 117 aa17.01■□□□□ 0.31
CPSF1-214ENST00000622776 ZNF705DP0CH99 300 aaPredicted RBP17.01■□□□□ 0.31
CPSF1-214ENST00000622776 ZNF705BP0CI00 300 aaPredicted RBP17.01■□□□□ 0.31
CPSF1-214ENST00000622776 SPART-AS1P0CW21 52 aa17.01■□□□□ 0.31
CPSF1-214ENST00000622776 MED14OSP0DP75 135 aa17.01■□□□□ 0.31
CPSF1-214ENST00000622776 PSG1P11464 419 aa17.01■□□□□ 0.31
CPSF1-214ENST00000622776 SURF2Q15527 256 aaPredicted RBP17.01■□□□□ 0.31
CPSF1-214ENST00000622776 GPR107Q5VW38 600 aa17.01■□□□□ 0.31
CPSF1-214ENST00000622776 OR51G1Q8NGK1 321 aa17.01■□□□□ 0.31
CPSF1-214ENST00000622776 NAA50Q9GZZ1 169 aaKnown RBP17.01■□□□□ 0.31
CPSF1-214ENST00000622776 EMP1P54849 157 aa17■□□□□ 0.31
CPSF1-214ENST00000622776 SSBP1Q04837 148 aaKnown RBP17■□□□□ 0.31
CPSF1-214ENST00000622776 CTF1Q16619 201 aa17■□□□□ 0.31
CPSF1-214ENST00000622776 NMSQ5H8A3 153 aa17■□□□□ 0.31
CPSF1-214ENST00000622776 CACFD1Q9UGQ2 172 aa17■□□□□ 0.31
CPSF1-214ENST00000622776 TMEM189A5PLL7 270 aa16.99■□□□□ 0.31
CPSF1-214ENST00000622776 SMIM9A6NGZ8 99 aa16.99■□□□□ 0.31
CPSF1-214ENST00000622776 CRYM-AS1A6NIL9 109 aa16.99■□□□□ 0.31
CPSF1-214ENST00000622776 IGKV3-20P01619 116 aa16.99■□□□□ 0.31
CPSF1-214ENST00000622776 DEFB1P60022 68 aa16.99■□□□□ 0.31
CPSF1-214ENST00000622776 LGALS9BQ3B8N2 356 aa16.99■□□□□ 0.31
CPSF1-214ENST00000622776 GDF5OSQ5U4N7 250 aa16.99■□□□□ 0.31
CPSF1-214ENST00000622776 GPR132Q9UNW8 380 aa16.99■□□□□ 0.31
CPSF1-214ENST00000622776 TMEM56-RWDD3S4R434 201 aa16.99■□□□□ 0.31
CPSF1-214ENST00000622776 DISC1C4P0D8 188 aa16.98■□□□□ 0.31
CPSF1-214ENST00000622776 IFNA10P01566 189 aa16.98■□□□□ 0.31
CPSF1-214ENST00000622776 SULT1A3P0DMM9 295 aa16.98■□□□□ 0.31
CPSF1-214ENST00000622776 SULT1A4P0DMN0 295 aa16.98■□□□□ 0.31
CPSF1-214ENST00000622776 FXYD7P58549 80 aa16.98■□□□□ 0.31
CPSF1-214ENST00000622776 RNF125Q96EQ8 232 aa16.98■□□□□ 0.31
CPSF1-214ENST00000622776 PBDC1Q9BVG4 233 aa16.98■□□□□ 0.31
CPSF1-214ENST00000622776 MIXL1Q9H2W2 232 aa16.98■□□□□ 0.31
CPSF1-214ENST00000622776 IGHV3OR16-12A0A075B7B8 117 aa16.97■□□□□ 0.31
CPSF1-214ENST00000622776 NUP62P37198 522 aaPredicted RBP16.97■□□□□ 0.31
CPSF1-214ENST00000622776 MRPS10P82664 201 aaKnown RBP16.97■□□□□ 0.31
CPSF1-214ENST00000622776 LINC00052Q96N35 136 aa16.97■□□□□ 0.31
CPSF1-214ENST00000622776 WDR12Q9GZL7 423 aaKnown RBP16.97■□□□□ 0.31
CPSF1-214ENST00000622776 SAV1Q9H4B6 383 aaPredicted RBP16.97■□□□□ 0.31
CPSF1-214ENST00000622776 PFDN2Q9UHV9 154 aa16.97■□□□□ 0.31
CPSF1-214ENST00000622776 RFNGQ9Y644 331 aa16.97■□□□□ 0.31
CPSF1-214ENST00000622776 U3KQ87 197 aa16.97■□□□□ 0.31
CPSF1-214ENST00000622776 IFNA21P01568 189 aa16.96■□□□□ 0.31
CPSF1-214ENST00000622776 KLF9Q13886 244 aaPredicted RBP16.96■□□□□ 0.31
CPSF1-214ENST00000622776 OR8G2PQ6IF36 304 aa16.96■□□□□ 0.31
CPSF1-214ENST00000622776 FOXI2Q6ZQN5 318 aa16.96■□□□□ 0.31
CPSF1-214ENST00000622776 IL22RA2Q969J5 263 aa16.96■□□□□ 0.31
CPSF1-214ENST00000622776 FAM210BQ96KR6 192 aa16.96■□□□□ 0.31
CPSF1-214ENST00000622776 PKD1P98161 4303 aa16.96■□□□□ 0.31
CPSF1-214ENST00000622776 ID1P41134 155 aa16.95■□□□□ 0.3
CPSF1-214ENST00000622776 UBE2DNLQ8IWF7 75 aa16.95■□□□□ 0.3
CPSF1-214ENST00000622776 OR4C16Q8NGL9 310 aa16.95■□□□□ 0.3
CPSF1-214ENST00000622776 CLUHP3Q96NS8 147 aa16.95■□□□□ 0.3
CPSF1-214ENST00000622776 PRR13Q9NZ81 148 aa16.95■□□□□ 0.3
CPSF1-214ENST00000622776 DKK2Q9UBU2 259 aa16.95■□□□□ 0.3
CPSF1-214ENST00000622776 AKAIN1P0CW23 69 aa16.94■□□□□ 0.3
CPSF1-214ENST00000622776 LGI3Q8N145 548 aa16.94■□□□□ 0.3
CPSF1-214ENST00000622776 ZNF709Q8N972 641 aa16.94■□□□□ 0.3
CPSF1-214ENST00000622776 SMIM4Q8WVI0 70 aa16.94■□□□□ 0.3
CPSF1-214ENST00000622776 HSPB7Q9UBY9 170 aa16.94■□□□□ 0.3
CPSF1-214ENST00000622776 IGLV2-18A0A075B6J9 118 aa16.93■□□□□ 0.3
CPSF1-214ENST00000622776 TEX48A0A1B0GUV7 120 aa16.93■□□□□ 0.3
CPSF1-214ENST00000622776 ZFP92A6NM28 416 aa16.93■□□□□ 0.3
CPSF1-214ENST00000622776 RGS5O15539 181 aa16.93■□□□□ 0.3
CPSF1-214ENST00000622776 PSMB3P49720 205 aa16.93■□□□□ 0.3
CPSF1-214ENST00000622776 ZNF90Q03938 601 aa16.93■□□□□ 0.3
CPSF1-214ENST00000622776 FAM222AQ5U5X8 452 aa16.93■□□□□ 0.3
CPSF1-214ENST00000622776 OR4B1Q8NGF8 309 aa16.93■□□□□ 0.3
CPSF1-214ENST00000622776 DTD1Q8TEA8 209 aa16.93■□□□□ 0.3
CPSF1-214ENST00000622776 PRRT1Q99946 306 aa16.93■□□□□ 0.3
CPSF1-214ENST00000622776 NIPSNAP3BQ9BS92 247 aa16.93■□□□□ 0.3
CPSF1-214ENST00000622776 RBKSQ9H477 322 aa16.93■□□□□ 0.3
CPSF1-214ENST00000622776 KCNIP3Q9Y2W7 256 aa16.93■□□□□ 0.3
CPSF1-214ENST00000622776 IGKV1D-37A0A075B6S9 117 aa16.92■□□□□ 0.3
CPSF1-214ENST00000622776 SOCS3O14543 225 aa16.92■□□□□ 0.3
CPSF1-214ENST00000622776 CTDSP2O14595 271 aa16.92■□□□□ 0.3
CPSF1-214ENST00000622776 CCR6P51684 374 aa16.92■□□□□ 0.3
CPSF1-214ENST00000622776 GAMTQ14353 236 aa16.92■□□□□ 0.3
CPSF1-214ENST00000622776 C1orf194Q5T5A4 169 aa16.92■□□□□ 0.3
CPSF1-214ENST00000622776 Q6ZR54 194 aa16.92■□□□□ 0.3
CPSF1-214ENST00000622776 OR51S1Q8NGJ8 323 aa16.92■□□□□ 0.3
CPSF1-214ENST00000622776 COQ8AQ8NI60 647 aa16.92■□□□□ 0.3
CPSF1-214ENST00000622776 SLC35B3Q9H1N7 401 aa16.92■□□□□ 0.3
CPSF1-214ENST00000622776 PLA2G2EQ9NZK7 142 aa16.92■□□□□ 0.3
CPSF1-214ENST00000622776 GPX4P36969 197 aaPredicted RBP16.91■□□□□ 0.3
CPSF1-214ENST00000622776 LYZP61626 148 aa16.91■□□□□ 0.3
CPSF1-214ENST00000622776 SUPT4H1P63272 117 aaKnown RBP16.91■□□□□ 0.3
CPSF1-214ENST00000622776 SMCO1Q147U7 214 aa16.91■□□□□ 0.3
CPSF1-214ENST00000622776 ZNF79Q15937 498 aa16.91■□□□□ 0.3
CPSF1-214ENST00000622776 SPATA31B1PQ5VZV4 182 aa16.91■□□□□ 0.3
CPSF1-214ENST00000622776 CLVS1Q8IUQ0 354 aaPredicted RBP16.91■□□□□ 0.3
CPSF1-214ENST00000622776 SLC35E1Q96K37 410 aa16.91■□□□□ 0.3
CPSF1-214ENST00000622776 GOLT1BQ9Y3E0 138 aa16.91■□□□□ 0.3
CPSF1-214ENST00000622776 A0A0B4J2A0 478 aa16.9■□□□□ 0.3
CPSF1-214ENST00000622776 ATP5IP56385 69 aaPredicted RBP16.9■□□□□ 0.3
CPSF1-214ENST00000622776 PSG9Q00887 426 aa16.9■□□□□ 0.3
CPSF1-214ENST00000622776 GSG1LQ6UXU4 331 aa16.9■□□□□ 0.3
CPSF1-214ENST00000622776 LYZL2Q7Z4W2 148 aa16.9■□□□□ 0.3
CPSF1-214ENST00000622776 SHPKQ9UHJ6 478 aa16.9■□□□□ 0.3
CPSF1-214ENST00000622776 CTDSPLO15194 276 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms