RNA–Protein interactions for RNA: ENST00000622555.1

PTCHD3-202, Transcript of patched domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene PTCHD3, Length 1,720 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3-202ENST00000622555 SLC45A2Q9UMX9 530 aa13.79□□□□□ -0.2
PTCHD3-202ENST00000622555 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.78□□□□□ -0.2
PTCHD3-202ENST00000622555 NUPL2O15504 423 aaKnown RBP13.78□□□□□ -0.2
PTCHD3-202ENST00000622555 APOC3P02656 99 aa13.78□□□□□ -0.2
PTCHD3-202ENST00000622555 GATA2P23769 480 aaPredicted RBP13.78□□□□□ -0.2
PTCHD3-202ENST00000622555 ZNF343Q6P1L6 599 aa13.78□□□□□ -0.2
PTCHD3-202ENST00000622555 STPG3Q8N7X2 389 aa13.78□□□□□ -0.2
PTCHD3-202ENST00000622555 UBE2E2Q96LR5 201 aa13.78□□□□□ -0.2
PTCHD3-202ENST00000622555 ATP6V0BQ99437 205 aa13.78□□□□□ -0.2
PTCHD3-202ENST00000622555 GNB4Q9HAV0 340 aa13.78□□□□□ -0.2
PTCHD3-202ENST00000622555 PXMP4Q9Y6I8 212 aa13.78□□□□□ -0.2
PTCHD3-202ENST00000622555 A0A1B0GUS0 222 aa13.78□□□□□ -0.2
PTCHD3-202ENST00000622555 TGOLN2O43493 480 aa13.78□□□□□ -0.2
PTCHD3-202ENST00000622555 FABP1P07148 127 aa13.78□□□□□ -0.2
PTCHD3-202ENST00000622555 CTSGP08311 255 aa13.78□□□□□ -0.2
PTCHD3-202ENST00000622555 RPL29P47914 159 aaKnown RBP13.78□□□□□ -0.2
PTCHD3-202ENST00000622555 FHITP49789 147 aa13.78□□□□□ -0.2
PTCHD3-202ENST00000622555 ELLP55199 621 aaPredicted RBP13.78□□□□□ -0.2
PTCHD3-202ENST00000622555 SELENOTP62341 195 aa13.78□□□□□ -0.2
PTCHD3-202ENST00000622555 TMEM182Q6ZP80 229 aaPredicted RBP13.78□□□□□ -0.2
PTCHD3-202ENST00000622555 C11orf44Q8N8P7 122 aa13.78□□□□□ -0.2
PTCHD3-202ENST00000622555 CHRDL1Q9BU40 450 aa13.78□□□□□ -0.2
PTCHD3-202ENST00000622555 PPP5D1E7EU14 171 aa13.77□□□□□ -0.21
PTCHD3-202ENST00000622555 CD28P10747 220 aa13.77□□□□□ -0.21
PTCHD3-202ENST00000622555 ADMP35318 185 aa13.77□□□□□ -0.21
PTCHD3-202ENST00000622555 ARL3P36405 182 aa13.77□□□□□ -0.21
PTCHD3-202ENST00000622555 B2MP61769 119 aa13.77□□□□□ -0.21
PTCHD3-202ENST00000622555 ZNF616Q08AN1 781 aa13.77□□□□□ -0.21
PTCHD3-202ENST00000622555 FFAR4Q5NUL3 377 aa13.77□□□□□ -0.21
PTCHD3-202ENST00000622555 ATRAIDQ6UW56 229 aa13.77□□□□□ -0.21
PTCHD3-202ENST00000622555 NARS2Q96I59 477 aaKnown RBP13.77□□□□□ -0.21
PTCHD3-202ENST00000622555 SEC11CQ9BY50 192 aa13.77□□□□□ -0.21
PTCHD3-202ENST00000622555 SLC39A9Q9NUM3 307 aa13.77□□□□□ -0.21
PTCHD3-202ENST00000622555 TSPAN15O95858 294 aa13.76□□□□□ -0.21
PTCHD3-202ENST00000622555 TRBV12-3P01733 135 aa13.76□□□□□ -0.21
PTCHD3-202ENST00000622555 YPEL3P61236 119 aaPredicted RBP13.76□□□□□ -0.21
PTCHD3-202ENST00000622555 SERF2P84101 59 aa13.76□□□□□ -0.21
PTCHD3-202ENST00000622555 PRR20EP86478 221 aa13.76□□□□□ -0.21
PTCHD3-202ENST00000622555 PRR20CP86479 221 aa13.76□□□□□ -0.21
PTCHD3-202ENST00000622555 PRR20DP86480 221 aa13.76□□□□□ -0.21
PTCHD3-202ENST00000622555 PRR20BP86481 221 aa13.76□□□□□ -0.21
PTCHD3-202ENST00000622555 PRR20AP86496 221 aa13.76□□□□□ -0.21
PTCHD3-202ENST00000622555 FOXL1Q12952 345 aa13.76□□□□□ -0.21
PTCHD3-202ENST00000622555 SPSB3Q6PJ21 355 aa13.76□□□□□ -0.21
PTCHD3-202ENST00000622555 DPPA3Q6W0C5 159 aa13.76□□□□□ -0.21
PTCHD3-202ENST00000622555 SUN5Q8TC36 379 aa13.76□□□□□ -0.21
PTCHD3-202ENST00000622555 TREM1Q9NP99 234 aa13.76□□□□□ -0.21
PTCHD3-202ENST00000622555 LGALS1P09382 135 aaKnown RBP13.76□□□□□ -0.21
PTCHD3-202ENST00000622555 LINC00869P0C866 280 aa13.76□□□□□ -0.21
PTCHD3-202ENST00000622555 RD3LP0DJH9 198 aa13.76□□□□□ -0.21
PTCHD3-202ENST00000622555 PSG1P11464 419 aa13.76□□□□□ -0.21
PTCHD3-202ENST00000622555 FAM209BQ5JX69 171 aa13.76□□□□□ -0.21
PTCHD3-202ENST00000622555 AKR1C8PQ5T2L2 129 aa13.76□□□□□ -0.21
PTCHD3-202ENST00000622555 HIST2H2BDQ6DRA6 164 aa13.76□□□□□ -0.21
PTCHD3-202ENST00000622555 PRIMA1Q86XR5 153 aa13.76□□□□□ -0.21
PTCHD3-202ENST00000622555 TMEM231Q9H6L2 316 aa13.76□□□□□ -0.21
PTCHD3-202ENST00000622555 PEF1Q9UBV8 284 aaKnown RBP13.76□□□□□ -0.21
PTCHD3-202ENST00000622555 IGHV3-35A0A0C4DH35 117 aa13.75□□□□□ -0.21
PTCHD3-202ENST00000622555 C9JQL5 133 aa13.75□□□□□ -0.21
PTCHD3-202ENST00000622555 TOMM40O96008 361 aa13.75□□□□□ -0.21
PTCHD3-202ENST00000622555 CDX1P47902 265 aaPredicted RBP13.75□□□□□ -0.21
PTCHD3-202ENST00000622555 FAM213BQ8TBF2 198 aa13.75□□□□□ -0.21
PTCHD3-202ENST00000622555 YIF1AO95070 293 aa13.74□□□□□ -0.21
PTCHD3-202ENST00000622555 C18orf65Q6ZTR6 163 aa13.74□□□□□ -0.21
PTCHD3-202ENST00000622555 Q8WTZ3 238 aa13.74□□□□□ -0.21
PTCHD3-202ENST00000622555 VSIRQ9H7M9 311 aa13.74□□□□□ -0.21
PTCHD3-202ENST00000622555 F8W036 122 aa13.73□□□□□ -0.21
PTCHD3-202ENST00000622555 BMPR1BO00238 502 aa13.73□□□□□ -0.21
PTCHD3-202ENST00000622555 RAB2AP61019 212 aa13.73□□□□□ -0.21
PTCHD3-202ENST00000622555 RELQ04864 619 aaPredicted RBP13.73□□□□□ -0.21
PTCHD3-202ENST00000622555 BTN1A1Q13410 526 aa13.73□□□□□ -0.21
PTCHD3-202ENST00000622555 ACOT6Q3I5F7 207 aaPredicted RBP13.73□□□□□ -0.21
PTCHD3-202ENST00000622555 GCSAMLQ5JQS6 135 aa13.73□□□□□ -0.21
PTCHD3-202ENST00000622555 ZNF600Q6ZNG1 722 aa13.73□□□□□ -0.21
PTCHD3-202ENST00000622555 SVBPQ8N300 66 aa13.73□□□□□ -0.21
PTCHD3-202ENST00000622555 OR51G1Q8NGK1 321 aa13.73□□□□□ -0.21
PTCHD3-202ENST00000622555 C4orf3Q8WVX3 66 aa13.73□□□□□ -0.21
PTCHD3-202ENST00000622555 CITED2Q99967 270 aaPredicted RBP13.73□□□□□ -0.21
PTCHD3-202ENST00000622555 DOK5Q9P104 306 aa13.73□□□□□ -0.21
PTCHD3-202ENST00000622555 MBP02144 154 aa13.73□□□□□ -0.21
PTCHD3-202ENST00000622555 LYZP61626 148 aa13.73□□□□□ -0.21
PTCHD3-202ENST00000622555 GUCA2BQ16661 112 aa13.73□□□□□ -0.21
PTCHD3-202ENST00000622555 KRTAP24-1Q3LI83 254 aa13.73□□□□□ -0.21
PTCHD3-202ENST00000622555 TMEM41BQ5BJD5 291 aa13.73□□□□□ -0.21
PTCHD3-202ENST00000622555 KLHL30-AS1Q8NEE0 82 aa13.73□□□□□ -0.21
PTCHD3-202ENST00000622555 PUS1Q9Y606 427 aaKnown RBP eCLIP13.73□□□□□ -0.21
PTCHD3-202ENST00000622555 A0A1W2PRX2 142 aa13.72□□□□□ -0.21
PTCHD3-202ENST00000622555 DNASE2O00115 360 aaPredicted RBP13.72□□□□□ -0.21
PTCHD3-202ENST00000622555 GGCTO75223 188 aaKnown RBP13.72□□□□□ -0.21
PTCHD3-202ENST00000622555 IL4P05112 153 aa13.72□□□□□ -0.21
PTCHD3-202ENST00000622555 PEA15Q15121 130 aa13.72□□□□□ -0.21
PTCHD3-202ENST00000622555 GUK1Q16774 197 aa13.72□□□□□ -0.21
PTCHD3-202ENST00000622555 WFDC12Q8WWY7 111 aa13.72□□□□□ -0.21
PTCHD3-202ENST00000622555 PBDC1Q9BVG4 233 aa13.72□□□□□ -0.21
PTCHD3-202ENST00000622555 NKX6-2Q9C056 277 aaPredicted RBP13.72□□□□□ -0.21
PTCHD3-202ENST00000622555 TSSC4Q9Y5U2 329 aaPredicted RBP13.72□□□□□ -0.21
PTCHD3-202ENST00000622555 ATRQ13535 2644 aa13.71□□□□□ -0.21
PTCHD3-202ENST00000622555 TRAV1-1A0A0B4J248 108 aa13.71□□□□□ -0.21
PTCHD3-202ENST00000622555 OR2C1O95371 312 aa13.71□□□□□ -0.21
PTCHD3-202ENST00000622555 ORM2P19652 201 aa13.71□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms