RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 FAM24AA6NFZ4 105 aa12.47□□□□□ -0.41
CCDC28A-202ENST00000611852 ZNF785A8K8V0 405 aa12.47□□□□□ -0.41
CCDC28A-202ENST00000611852 CHEK1O14757 476 aa12.47□□□□□ -0.41
CCDC28A-202ENST00000611852 PSG1P11464 419 aa12.47□□□□□ -0.41
CCDC28A-202ENST00000611852 DLK1P80370 383 aa12.47□□□□□ -0.41
CCDC28A-202ENST00000611852 ZNF90Q03938 601 aa12.47□□□□□ -0.41
CCDC28A-202ENST00000611852 ARL16Q0P5N6 197 aa12.47□□□□□ -0.41
CCDC28A-202ENST00000611852 PPP1R1CQ8WVI7 109 aa12.47□□□□□ -0.41
CCDC28A-202ENST00000611852 TRGV9Q99603 122 aa12.47□□□□□ -0.41
CCDC28A-202ENST00000611852 RHPN1-AS1Q9BWJ2 59 aa12.47□□□□□ -0.41
CCDC28A-202ENST00000611852 H0YIZ8 118 aa12.46□□□□□ -0.42
CCDC28A-202ENST00000611852 RLN2P04090 185 aa12.46□□□□□ -0.42
CCDC28A-202ENST00000611852 AKR1C1Q04828 323 aa12.46□□□□□ -0.42
CCDC28A-202ENST00000611852 TMEM144Q7Z5S9 345 aa12.46□□□□□ -0.42
CCDC28A-202ENST00000611852 LSM4Q9Y4Z0 139 aaKnown RBP12.46□□□□□ -0.42
CCDC28A-202ENST00000611852 IGHV3OR16-13A0A075B7E8 117 aa12.45□□□□□ -0.42
CCDC28A-202ENST00000611852 IGHV3-74A0A0B4J1X5 117 aa12.45□□□□□ -0.42
CCDC28A-202ENST00000611852 IGSF23A1L1A6 192 aa12.45□□□□□ -0.42
CCDC28A-202ENST00000611852 SMCO3A2RU48 225 aa12.45□□□□□ -0.42
CCDC28A-202ENST00000611852 FNDC10F2Z333 226 aa12.45□□□□□ -0.42
CCDC28A-202ENST00000611852 G3V3Q6 166 aa12.45□□□□□ -0.42
CCDC28A-202ENST00000611852 CST7O76096 145 aa12.45□□□□□ -0.42
CCDC28A-202ENST00000611852 APOHP02749 345 aaPredicted RBP12.45□□□□□ -0.42
CCDC28A-202ENST00000611852 IL4P05112 153 aa12.45□□□□□ -0.42
CCDC28A-202ENST00000611852 NPPCP23582 126 aa12.45□□□□□ -0.42
CCDC28A-202ENST00000611852 CRYBB3P26998 211 aa12.45□□□□□ -0.42
CCDC28A-202ENST00000611852 USF2Q15853 346 aaPredicted RBP12.45□□□□□ -0.42
CCDC28A-202ENST00000611852 TMEM252Q8N6L7 170 aa12.45□□□□□ -0.42
CCDC28A-202ENST00000611852 OR51G1Q8NGK1 321 aa12.45□□□□□ -0.42
CCDC28A-202ENST00000611852 METTL26Q96S19 204 aa12.45□□□□□ -0.42
CCDC28A-202ENST00000611852 RNF2Q99496 336 aa12.45□□□□□ -0.42
CCDC28A-202ENST00000611852 GGACTQ9BVM4 153 aa12.45□□□□□ -0.42
CCDC28A-202ENST00000611852 OR5AC2Q9NZP5 309 aa12.45□□□□□ -0.42
CCDC28A-202ENST00000611852 TRAV25A0A0B4J276 109 aa12.44□□□□□ -0.42
CCDC28A-202ENST00000611852 E5RGE8 158 aa12.44□□□□□ -0.42
CCDC28A-202ENST00000611852 FABP1P07148 127 aa12.44□□□□□ -0.42
CCDC28A-202ENST00000611852 SULT1A1P50225 295 aa12.44□□□□□ -0.42
CCDC28A-202ENST00000611852 GUCA2BQ16661 112 aa12.44□□□□□ -0.42
CCDC28A-202ENST00000611852 RBPMS2Q6ZRY4 209 aaKnown RBP12.44□□□□□ -0.42
CCDC28A-202ENST00000611852 ST8SIA2Q92186 375 aa12.44□□□□□ -0.42
CCDC28A-202ENST00000611852 RNF125Q96EQ8 232 aa12.44□□□□□ -0.42
CCDC28A-202ENST00000611852 VSIRQ9H7M9 311 aa12.44□□□□□ -0.42
CCDC28A-202ENST00000611852 MPC2O95563 127 aa12.43□□□□□ -0.42
CCDC28A-202ENST00000611852 SLC38A11Q08AI6 406 aa12.43□□□□□ -0.42
CCDC28A-202ENST00000611852 OR2F1Q13607 317 aa12.43□□□□□ -0.42
CCDC28A-202ENST00000611852 Q5BKY6 102 aa12.43□□□□□ -0.42
CCDC28A-202ENST00000611852 DEFB121Q5J5C9 76 aa12.43□□□□□ -0.42
CCDC28A-202ENST00000611852 LAMTOR1Q6IAA8 161 aa12.43□□□□□ -0.42
CCDC28A-202ENST00000611852 STX12Q86Y82 276 aa12.43□□□□□ -0.42
CCDC28A-202ENST00000611852 Q8N1Y9 231 aa12.43□□□□□ -0.42
CCDC28A-202ENST00000611852 LILRB2Q8N423 598 aa12.43□□□□□ -0.42
CCDC28A-202ENST00000611852 C9orf62Q8N4C0 152 aa12.43□□□□□ -0.42
CCDC28A-202ENST00000611852 TMEM217Q8N7C4 229 aa12.43□□□□□ -0.42
CCDC28A-202ENST00000611852 OR11H4Q8NGC9 324 aa12.43□□□□□ -0.42
CCDC28A-202ENST00000611852 NPVFQ9HCQ7 196 aa12.43□□□□□ -0.42
CCDC28A-202ENST00000611852 HSPB11Q9Y547 144 aa12.43□□□□□ -0.42
CCDC28A-202ENST00000611852 FXYD6-FXYD2A0A087WZ82 144 aa12.42□□□□□ -0.42
CCDC28A-202ENST00000611852 IGHV3-66A0A0C4DH42 116 aa12.42□□□□□ -0.42
CCDC28A-202ENST00000611852 TSPAN4O14817 238 aa12.42□□□□□ -0.42
CCDC28A-202ENST00000611852 PET100P0DJ07 73 aa12.42□□□□□ -0.42
CCDC28A-202ENST00000611852 BMI1P35226 326 aa12.42□□□□□ -0.42
CCDC28A-202ENST00000611852 P2RY1P47900 373 aa12.42□□□□□ -0.42
CCDC28A-202ENST00000611852 RNF126Q9BV68 326 aa12.42□□□□□ -0.42
CCDC28A-202ENST00000611852 U3KQE9 123 aa12.42□□□□□ -0.42
CCDC28A-202ENST00000611852 A0A1W2PS18 150 aa12.42□□□□□ -0.42
CCDC28A-202ENST00000611852 HMSDA8MTL9 139 aa12.42□□□□□ -0.42
CCDC28A-202ENST00000611852 C4BPBP20851 252 aa12.42□□□□□ -0.42
CCDC28A-202ENST00000611852 FAM90A2PQ658T7 463 aa12.42□□□□□ -0.42
CCDC28A-202ENST00000611852 TMEM182Q6ZP80 229 aaPredicted RBP12.42□□□□□ -0.42
CCDC28A-202ENST00000611852 GTSCR1Q86UQ5 136 aa12.42□□□□□ -0.42
CCDC28A-202ENST00000611852 THAP6Q8TBB0 222 aa12.42□□□□□ -0.42
CCDC28A-202ENST00000611852 CD7P09564 240 aa12.41□□□□□ -0.42
CCDC28A-202ENST00000611852 GATA2P23769 480 aaPredicted RBP12.41□□□□□ -0.42
CCDC28A-202ENST00000611852 S100A11P31949 105 aa12.41□□□□□ -0.42
CCDC28A-202ENST00000611852 TEPPQ6URK8 271 aa12.41□□□□□ -0.42
CCDC28A-202ENST00000611852 NARS2Q96I59 477 aaKnown RBP12.41□□□□□ -0.42
CCDC28A-202ENST00000611852 SPAG8Q99932 426 aaPredicted RBP12.41□□□□□ -0.42
CCDC28A-202ENST00000611852 PBDC1Q9BVG4 233 aa12.41□□□□□ -0.42
CCDC28A-202ENST00000611852 TMEM231Q9H6L2 316 aa12.41□□□□□ -0.42
CCDC28A-202ENST00000611852 RABAC1Q9UI14 185 aa12.41□□□□□ -0.42
CCDC28A-202ENST00000611852 SMAD5-AS1Q9Y6J3 95 aa12.41□□□□□ -0.42
CCDC28A-202ENST00000611852 PRKDCP78527 4128 aaKnown RBP12.4□□□□□ -0.42
CCDC28A-202ENST00000611852 ARPC5O15511 151 aa12.4□□□□□ -0.42
CCDC28A-202ENST00000611852 DFFBO76075 338 aa12.4□□□□□ -0.42
CCDC28A-202ENST00000611852 CFDP00746 253 aaPredicted RBP12.4□□□□□ -0.42
CCDC28A-202ENST00000611852 CD5P06127 495 aa12.4□□□□□ -0.42
CCDC28A-202ENST00000611852 CD81P60033 236 aa12.4□□□□□ -0.42
CCDC28A-202ENST00000611852 LYZP61626 148 aa12.4□□□□□ -0.42
CCDC28A-202ENST00000611852 HBG1P69891 147 aa12.4□□□□□ -0.42
CCDC28A-202ENST00000611852 HBG2P69892 147 aa12.4□□□□□ -0.42
CCDC28A-202ENST00000611852 EWSR1Q01844 656 aaKnown RBP eCLIP12.4□□□□□ -0.42
CCDC28A-202ENST00000611852 NHLH2Q02577 135 aa12.4□□□□□ -0.42
CCDC28A-202ENST00000611852 VWC2Q2TAL6 325 aa12.4□□□□□ -0.42
CCDC28A-202ENST00000611852 CYP2G1PQ6ZSU1 146 aa12.4□□□□□ -0.42
CCDC28A-202ENST00000611852 TCF24Q7RTU0 167 aa12.4□□□□□ -0.42
CCDC28A-202ENST00000611852 BPIFCQ8NFQ6 507 aa12.4□□□□□ -0.42
CCDC28A-202ENST00000611852 SLC25A31Q9H0C2 315 aa12.4□□□□□ -0.42
CCDC28A-202ENST00000611852 BUB3O43684 328 aa12.39□□□□□ -0.43
CCDC28A-202ENST00000611852 GRAMD2BQ96HH9 432 aa12.39□□□□□ -0.43
CCDC28A-202ENST00000611852 UQCC1Q9NVA1 299 aa12.39□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms