RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 RSL24D1Q9UHA3 163 aaKnown RBP5.52□□□□□ -1.53
CUX1-219ENST00000606749 SCP2D1Q9UJQ7 156 aa5.52□□□□□ -1.53
CUX1-219ENST00000606749 APLNQ9ULZ1 77 aa5.52□□□□□ -1.53
CUX1-219ENST00000606749 X6R8D5 127 aa5.52□□□□□ -1.53
CUX1-219ENST00000606749 A0A0B4J2A0 478 aa5.51□□□□□ -1.53
CUX1-219ENST00000606749 FABP12A6NFH5 140 aa5.51□□□□□ -1.53
CUX1-219ENST00000606749 FAM90A26D6RGX4 464 aa5.51□□□□□ -1.53
CUX1-219ENST00000606749 H3BMM0 161 aa5.51□□□□□ -1.53
CUX1-219ENST00000606749 PSG1P11464 419 aa5.51□□□□□ -1.53
CUX1-219ENST00000606749 AKR1C4P17516 323 aa5.51□□□□□ -1.53
CUX1-219ENST00000606749 HLA-DMBP28068 263 aa5.51□□□□□ -1.53
CUX1-219ENST00000606749 SNRPD3P62318 126 aaKnown RBP5.51□□□□□ -1.53
CUX1-219ENST00000606749 SUPT4H1P63272 117 aaKnown RBP5.51□□□□□ -1.53
CUX1-219ENST00000606749 KLF9Q13886 244 aaPredicted RBP5.51□□□□□ -1.53
CUX1-219ENST00000606749 SMCO1Q147U7 214 aa5.51□□□□□ -1.53
CUX1-219ENST00000606749 LGI3Q8N145 548 aa5.51□□□□□ -1.53
CUX1-219ENST00000606749 OR51G1Q8NGK1 321 aa5.51□□□□□ -1.53
CUX1-219ENST00000606749 BCL7BQ9BQE9 202 aa5.51□□□□□ -1.53
CUX1-219ENST00000606749 SLIRPQ9GZT3 109 aaKnown RBP5.51□□□□□ -1.53
CUX1-219ENST00000606749 RBKSQ9H477 322 aa5.51□□□□□ -1.53
CUX1-219ENST00000606749 NRN1Q9NPD7 142 aa5.51□□□□□ -1.53
CUX1-219ENST00000606749 MCUBQ9NWR8 336 aa5.51□□□□□ -1.53
CUX1-219ENST00000606749 SHPKQ9UHJ6 478 aa5.51□□□□□ -1.53
CUX1-219ENST00000606749 TBC1D24Q9ULP9 559 aa5.51□□□□□ -1.53
CUX1-219ENST00000606749 IGKV1D-37A0A075B6S9 117 aa5.5□□□□□ -1.53
CUX1-219ENST00000606749 GPX4P36969 197 aaPredicted RBP5.5□□□□□ -1.53
CUX1-219ENST00000606749 ATP5IP56385 69 aaPredicted RBP5.5□□□□□ -1.53
CUX1-219ENST00000606749 NUTF2P61970 127 aaKnown RBP5.5□□□□□ -1.53
CUX1-219ENST00000606749 GAMTQ14353 236 aa5.5□□□□□ -1.53
CUX1-219ENST00000606749 SIGLEC15Q6ZMC9 328 aa5.5□□□□□ -1.53
CUX1-219ENST00000606749 Q6ZTC4 211 aa5.5□□□□□ -1.53
CUX1-219ENST00000606749 DTD1Q8TEA8 209 aa5.5□□□□□ -1.53
CUX1-219ENST00000606749 TRAV10A0A0B4J240 114 aa5.49□□□□□ -1.53
CUX1-219ENST00000606749 ZFP92A6NM28 416 aa5.49□□□□□ -1.53
CUX1-219ENST00000606749 SNRPGP15A8MWD9 76 aa5.49□□□□□ -1.53
CUX1-219ENST00000606749 PITX3O75364 302 aa5.49□□□□□ -1.53
CUX1-219ENST00000606749 NKX2-1P43699 371 aaPredicted RBP5.49□□□□□ -1.53
CUX1-219ENST00000606749 SRPXP78539 464 aa5.49□□□□□ -1.53
CUX1-219ENST00000606749 ZNF90Q03938 601 aa5.49□□□□□ -1.53
CUX1-219ENST00000606749 C1orf194Q5T5A4 169 aa5.49□□□□□ -1.53
CUX1-219ENST00000606749 OR1S1Q8NH92 325 aa5.49□□□□□ -1.53
CUX1-219ENST00000606749 RNF125Q96EQ8 232 aa5.49□□□□□ -1.53
CUX1-219ENST00000606749 PBDC1Q9BVG4 233 aa5.49□□□□□ -1.53
CUX1-219ENST00000606749 C1QTNF4Q9BXJ3 329 aa5.49□□□□□ -1.53
CUX1-219ENST00000606749 XCL2Q9UBD3 114 aa5.49□□□□□ -1.53
CUX1-219ENST00000606749 CELA1Q9UNI1 258 aa5.49□□□□□ -1.53
CUX1-219ENST00000606749 FRAS1Q86XX4 4008 aa5.49□□□□□ -1.53
CUX1-219ENST00000606749 IGHV4-4A0A075B6R2 117 aa5.48□□□□□ -1.53
CUX1-219ENST00000606749 PIGBOS1A0A0B4J2F0 54 aa5.48□□□□□ -1.53
CUX1-219ENST00000606749 DUXBA0A1W2PPF3 345 aa5.48□□□□□ -1.53
CUX1-219ENST00000606749 H3BMQ9 156 aa5.48□□□□□ -1.53
CUX1-219ENST00000606749 ANXA3P12429 323 aa5.48□□□□□ -1.53
CUX1-219ENST00000606749 HLA-DRB4P13762 266 aa5.48□□□□□ -1.53
CUX1-219ENST00000606749 DEFB1P60022 68 aa5.48□□□□□ -1.53
CUX1-219ENST00000606749 C12orf74Q32Q52 190 aa5.48□□□□□ -1.53
CUX1-219ENST00000606749 TMEM128Q5BJH2 165 aa5.48□□□□□ -1.53
CUX1-219ENST00000606749 GDF5OSQ5U4N7 250 aa5.48□□□□□ -1.53
CUX1-219ENST00000606749 OR8G2PQ6IF36 304 aa5.48□□□□□ -1.53
CUX1-219ENST00000606749 TMED4Q7Z7H5 227 aa5.48□□□□□ -1.53
CUX1-219ENST00000606749 CENPSQ8N2Z9 138 aa5.48□□□□□ -1.53
CUX1-219ENST00000606749 MCFD2Q8NI22 146 aa5.48□□□□□ -1.53
CUX1-219ENST00000606749 SLC35E1Q96K37 410 aa5.48□□□□□ -1.53
CUX1-219ENST00000606749 LINC00052Q96N35 136 aa5.48□□□□□ -1.53
CUX1-219ENST00000606749 TRGV9Q99603 122 aa5.48□□□□□ -1.53
CUX1-219ENST00000606749 RNF126Q9BV68 326 aa5.48□□□□□ -1.53
CUX1-219ENST00000606749 WDR12Q9GZL7 423 aaKnown RBP5.48□□□□□ -1.53
CUX1-219ENST00000606749 PFDN2Q9UHV9 154 aa5.48□□□□□ -1.53
CUX1-219ENST00000606749 HLA-DRB4X5D2U9 266 aa5.48□□□□□ -1.53
CUX1-219ENST00000606749 IGKV1OR2-108A0A075B7D4 117 aa5.47□□□□□ -1.53
CUX1-219ENST00000606749 DEFB131BA0A096LNP1 70 aa5.47□□□□□ -1.53
CUX1-219ENST00000606749 ZNF705FA8MVS1 300 aaPredicted RBP5.47□□□□□ -1.53
CUX1-219ENST00000606749 SOCS3O14543 225 aa5.47□□□□□ -1.53
CUX1-219ENST00000606749 NOL3O60936 208 aaKnown RBP5.47□□□□□ -1.53
CUX1-219ENST00000606749 FABP1P07148 127 aa5.47□□□□□ -1.53
CUX1-219ENST00000606749 ZNF705DP0CH99 300 aaPredicted RBP5.47□□□□□ -1.53
CUX1-219ENST00000606749 ZNF705BP0CI00 300 aaPredicted RBP5.47□□□□□ -1.53
CUX1-219ENST00000606749 IAPPP10997 89 aa5.47□□□□□ -1.53
CUX1-219ENST00000606749 SLC25A6P12236 298 aa5.47□□□□□ -1.53
CUX1-219ENST00000606749 FAUP35544 74 aaKnown RBP5.47□□□□□ -1.53
CUX1-219ENST00000606749 NUP62P37198 522 aaPredicted RBP5.47□□□□□ -1.53
CUX1-219ENST00000606749 ID1P41134 155 aa5.47□□□□□ -1.53
CUX1-219ENST00000606749 FXYD7P58549 80 aa5.47□□□□□ -1.53
CUX1-219ENST00000606749 AP3S2P59780 193 aa5.47□□□□□ -1.53
CUX1-219ENST00000606749 LYZP61626 148 aa5.47□□□□□ -1.53
CUX1-219ENST00000606749 RAB11AP62491 216 aa5.47□□□□□ -1.53
CUX1-219ENST00000606749 OR2F1Q13607 317 aa5.47□□□□□ -1.53
CUX1-219ENST00000606749 PYDC2Q56P42 97 aa5.47□□□□□ -1.53
CUX1-219ENST00000606749 ZNF705AQ6ZN79 300 aaPredicted RBP5.47□□□□□ -1.53
CUX1-219ENST00000606749 ZNF767PQ75MW2 155 aa5.47□□□□□ -1.53
CUX1-219ENST00000606749 TOMM5Q8N4H5 51 aa5.47□□□□□ -1.53
CUX1-219ENST00000606749 LRTM2Q8N967 370 aa5.47□□□□□ -1.53
CUX1-219ENST00000606749 TRIM63Q969Q1 353 aa5.47□□□□□ -1.53
CUX1-219ENST00000606749 CLUHP3Q96NS8 147 aa5.47□□□□□ -1.53
CUX1-219ENST00000606749 NEU1Q99519 415 aa5.47□□□□□ -1.53
CUX1-219ENST00000606749 SAV1Q9H4B6 383 aaPredicted RBP5.47□□□□□ -1.53
CUX1-219ENST00000606749 SMIM9A6NGZ8 99 aa5.46□□□□□ -1.54
CUX1-219ENST00000606749 MED6O75586 246 aa5.46□□□□□ -1.54
CUX1-219ENST00000606749 SFT2D2O95562 160 aa5.46□□□□□ -1.54
CUX1-219ENST00000606749 IGKV3-20P01619 116 aa5.46□□□□□ -1.54
CUX1-219ENST00000606749 SPART-AS1P0CW21 52 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms