RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 PAFAH1B2P68402 229 aa13.82□□□□□ -0.2
PNKP-213ENST00000599543 ID3Q02535 119 aa13.82□□□□□ -0.2
PNKP-213ENST00000599543 TIGITQ495A1 244 aa13.82□□□□□ -0.2
PNKP-213ENST00000599543 SPANXN5Q5MJ07 72 aa13.82□□□□□ -0.2
PNKP-213ENST00000599543 GBGT1Q8N5D6 347 aa13.82□□□□□ -0.2
PNKP-213ENST00000599543 RNASEH2CQ8TDP1 164 aaKnown RBP13.82□□□□□ -0.2
PNKP-213ENST00000599543 U3KQ87 197 aa13.82□□□□□ -0.2
PNKP-213ENST00000599543 ATF4P18848 351 aaPredicted RBP13.81□□□□□ -0.2
PNKP-213ENST00000599543 ZNF124Q15973 351 aa13.81□□□□□ -0.2
PNKP-213ENST00000599543 PRSS54Q6PEW0 395 aa13.81□□□□□ -0.2
PNKP-213ENST00000599543 TOMM20LQ6UXN7 152 aa13.81□□□□□ -0.2
PNKP-213ENST00000599543 TCF24Q7RTU0 167 aa13.81□□□□□ -0.2
PNKP-213ENST00000599543 MARVELD1Q9BSK0 173 aa13.81□□□□□ -0.2
PNKP-213ENST00000599543 GPN1Q9HCN4 374 aaPredicted RBP13.81□□□□□ -0.2
PNKP-213ENST00000599543 RPS10-NUDT3A0A1W2PQS6 291 aa13.8□□□□□ -0.2
PNKP-213ENST00000599543 GOSR2O14653 212 aa13.8□□□□□ -0.2
PNKP-213ENST00000599543 CLN5O75503 358 aa13.8□□□□□ -0.2
PNKP-213ENST00000599543 LY6G6CO95867 125 aa13.8□□□□□ -0.2
PNKP-213ENST00000599543 MBPP02686 304 aaPredicted RBP13.8□□□□□ -0.2
PNKP-213ENST00000599543 FAM90A2PQ658T7 463 aa13.8□□□□□ -0.2
PNKP-213ENST00000599543 ZNF600Q6ZNG1 722 aa13.8□□□□□ -0.2
PNKP-213ENST00000599543 OR4X1Q8NH49 305 aa13.8□□□□□ -0.2
PNKP-213ENST00000599543 ST8SIA2Q92186 375 aa13.8□□□□□ -0.2
PNKP-213ENST00000599543 NPIPB3Q92617 1050 aa13.8□□□□□ -0.2
PNKP-213ENST00000599543 CSTL1Q9H114 145 aa13.8□□□□□ -0.2
PNKP-213ENST00000599543 PSENENQ9NZ42 101 aa13.8□□□□□ -0.2
PNKP-213ENST00000599543 RCL1Q9Y2P8 373 aaKnown RBP13.8□□□□□ -0.2
PNKP-213ENST00000599543 LSM5Q9Y4Y9 91 aaKnown RBP13.8□□□□□ -0.2
PNKP-213ENST00000599543 PUS1Q9Y606 427 aaKnown RBP eCLIP13.8□□□□□ -0.2
PNKP-213ENST00000599543 CCNKO75909 580 aa13.79□□□□□ -0.2
PNKP-213ENST00000599543 PAX9P55771 341 aa13.79□□□□□ -0.2
PNKP-213ENST00000599543 CEMP1Q6PRD7 247 aaPredicted RBP13.79□□□□□ -0.2
PNKP-213ENST00000599543 NOXA1Q86UR1 476 aa13.79□□□□□ -0.2
PNKP-213ENST00000599543 CIB3Q96Q77 187 aaPredicted RBP13.79□□□□□ -0.2
PNKP-213ENST00000599543 KLK5Q9Y337 293 aaPredicted RBP13.79□□□□□ -0.2
PNKP-213ENST00000599543 DNASE2O00115 360 aaPredicted RBP13.78□□□□□ -0.2
PNKP-213ENST00000599543 SCGB2A1O75556 95 aa13.78□□□□□ -0.2
PNKP-213ENST00000599543 RPL11P62913 178 aaKnown RBP13.78□□□□□ -0.2
PNKP-213ENST00000599543 GSG1LQ6UXU4 331 aa13.78□□□□□ -0.2
PNKP-213ENST00000599543 GATAD1Q8WUU5 269 aa13.78□□□□□ -0.2
PNKP-213ENST00000599543 TMEM231Q9H6L2 316 aa13.78□□□□□ -0.2
PNKP-213ENST00000599543 VSIRQ9H7M9 311 aa13.78□□□□□ -0.2
PNKP-213ENST00000599543 ZFAND3Q9H8U3 227 aa13.78□□□□□ -0.2
PNKP-213ENST00000599543 IGHV3-66A0A0C4DH42 116 aa13.77□□□□□ -0.21
PNKP-213ENST00000599543 PRAF2O60831 178 aa13.77□□□□□ -0.21
PNKP-213ENST00000599543 IGKV1-17P01599 117 aa13.77□□□□□ -0.21
PNKP-213ENST00000599543 APOHP02749 345 aaPredicted RBP13.77□□□□□ -0.21
PNKP-213ENST00000599543 SLC25A4P12235 298 aa13.77□□□□□ -0.21
PNKP-213ENST00000599543 OR10J1P30954 320 aa13.77□□□□□ -0.21
PNKP-213ENST00000599543 S100A10P60903 97 aa13.77□□□□□ -0.21
PNKP-213ENST00000599543 RAB11AP62491 216 aa13.77□□□□□ -0.21
PNKP-213ENST00000599543 OR8G2PQ6IF36 304 aa13.77□□□□□ -0.21
PNKP-213ENST00000599543 C2orf50Q96LR7 162 aa13.77□□□□□ -0.21
PNKP-213ENST00000599543 MS4A6AQ9H2W1 248 aa13.77□□□□□ -0.21
PNKP-213ENST00000599543 STRAPQ9Y3F4 350 aaKnown RBP13.77□□□□□ -0.21
PNKP-213ENST00000599543 SNRPGP15A8MWD9 76 aa13.76□□□□□ -0.21
PNKP-213ENST00000599543 K7EPK0 472 aa13.76□□□□□ -0.21
PNKP-213ENST00000599543 DFFBO76075 338 aa13.76□□□□□ -0.21
PNKP-213ENST00000599543 IGLC1P0CG04 106 aa13.76□□□□□ -0.21
PNKP-213ENST00000599543 GAMTQ14353 236 aa13.76□□□□□ -0.21
PNKP-213ENST00000599543 ETFRF1Q6IPR1 90 aa13.76□□□□□ -0.21
PNKP-213ENST00000599543 RARRES2Q99969 163 aa13.76□□□□□ -0.21
PNKP-213ENST00000599543 KMT2AQ03164 3969 aa13.75□□□□□ -0.21
PNKP-213ENST00000599543 SSNA1O43805 119 aa13.75□□□□□ -0.21
PNKP-213ENST00000599543 CA1P00915 261 aaPredicted RBP13.75□□□□□ -0.21
PNKP-213ENST00000599543 METTL15P1P0C7V9 234 aa13.75□□□□□ -0.21
PNKP-213ENST00000599543 NPPCP23582 126 aa13.75□□□□□ -0.21
PNKP-213ENST00000599543 LILRB2Q8N423 598 aa13.75□□□□□ -0.21
PNKP-213ENST00000599543 SLC35E1Q96K37 410 aa13.75□□□□□ -0.21
PNKP-213ENST00000599543 SMIM8Q96KF7 97 aa13.75□□□□□ -0.21
PNKP-213ENST00000599543 METTL26Q96S19 204 aa13.75□□□□□ -0.21
PNKP-213ENST00000599543 RABAC1Q9UI14 185 aa13.75□□□□□ -0.21
PNKP-213ENST00000599543 ALG5Q9Y673 324 aa13.75□□□□□ -0.21
PNKP-213ENST00000599543 FRAS1Q86XX4 4008 aa13.74□□□□□ -0.21
PNKP-213ENST00000599543 TRAV2A0A0B4J234 112 aa13.74□□□□□ -0.21
PNKP-213ENST00000599543 A0A1W2PS18 150 aa13.74□□□□□ -0.21
PNKP-213ENST00000599543 C7orf66A4D0T2 115 aa13.74□□□□□ -0.21
PNKP-213ENST00000599543 PRSS46E5RG02 174 aa13.74□□□□□ -0.21
PNKP-213ENST00000599543 PTTG1O95997 202 aa13.74□□□□□ -0.21
PNKP-213ENST00000599543 DEFB131AP59861 70 aa13.74□□□□□ -0.21
PNKP-213ENST00000599543 RRAS2P62070 204 aaPredicted RBP13.74□□□□□ -0.21
PNKP-213ENST00000599543 RPP30P78346 268 aaKnown RBP13.74□□□□□ -0.21
PNKP-213ENST00000599543 RAB32Q13637 225 aa13.74□□□□□ -0.21
PNKP-213ENST00000599543 LEMD1Q68G75 181 aa13.74□□□□□ -0.21
PNKP-213ENST00000599543 OR1S2Q8NGQ3 325 aa13.74□□□□□ -0.21
PNKP-213ENST00000599543 OR11H2Q8NH07 326 aa13.74□□□□□ -0.21
PNKP-213ENST00000599543 PHLDA1Q8WV24 401 aaPredicted RBP13.74□□□□□ -0.21
PNKP-213ENST00000599543 AGRNO00468 2067 aa13.73□□□□□ -0.21
PNKP-213ENST00000599543 L7N2F9 121 aa13.73□□□□□ -0.21
PNKP-213ENST00000599543 GPX4P36969 197 aaPredicted RBP13.73□□□□□ -0.21
PNKP-213ENST00000599543 VAMP2P63027 116 aa13.73□□□□□ -0.21
PNKP-213ENST00000599543 ZNF90Q03938 601 aa13.73□□□□□ -0.21
PNKP-213ENST00000599543 ACOT7LQ6ZUV0 252 aa13.73□□□□□ -0.21
PNKP-213ENST00000599543 NARS2Q96I59 477 aaKnown RBP13.73□□□□□ -0.21
PNKP-213ENST00000599543 RAB40CQ96S21 281 aa13.73□□□□□ -0.21
PNKP-213ENST00000599543 IGKV1D-37A0A075B6S9 117 aa13.72□□□□□ -0.21
PNKP-213ENST00000599543 TRAV30A0A087WSZ9 112 aa13.72□□□□□ -0.21
PNKP-213ENST00000599543 SMCO3A2RU48 225 aa13.72□□□□□ -0.21
PNKP-213ENST00000599543 ZFP92A6NM28 416 aa13.72□□□□□ -0.21
PNKP-213ENST00000599543 PMS2P5A8MQ11 134 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms