RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 CENPWQ5EE01 88 aa11.42□□□□□ -0.58
VRK3-217ENST00000599538 H3BTX0 84 aa11.41□□□□□ -0.58
VRK3-217ENST00000599538 EGR2P11161 476 aaPredicted RBP11.41□□□□□ -0.58
VRK3-217ENST00000599538 LYZP61626 148 aa11.41□□□□□ -0.58
VRK3-217ENST00000599538 Q8N9W7 124 aa11.41□□□□□ -0.58
VRK3-217ENST00000599538 ARPC1AQ92747 370 aa11.41□□□□□ -0.58
VRK3-217ENST00000599538 IGHV7-81A0A0B4J1V7 117 aa11.41□□□□□ -0.58
VRK3-217ENST00000599538 A0A0U1RQK1 487 aa11.41□□□□□ -0.58
VRK3-217ENST00000599538 CENPVL3A0A0U1RRI6 287 aa11.41□□□□□ -0.58
VRK3-217ENST00000599538 MDFIC2A0A1B0GVS7 189 aa11.41□□□□□ -0.58
VRK3-217ENST00000599538 C9JCJ5 164 aa11.41□□□□□ -0.58
VRK3-217ENST00000599538 SLC17A3O00476 420 aa11.41□□□□□ -0.58
VRK3-217ENST00000599538 GGCTO75223 188 aaKnown RBP11.41□□□□□ -0.58
VRK3-217ENST00000599538 HYPMO75409 117 aa11.41□□□□□ -0.58
VRK3-217ENST00000599538 S100PP25815 95 aa11.41□□□□□ -0.58
VRK3-217ENST00000599538 BLNKQ8WV28 456 aa11.41□□□□□ -0.58
VRK3-217ENST00000599538 FAM168AQ92567 244 aa11.41□□□□□ -0.58
VRK3-217ENST00000599538 PERPQ96FX8 193 aa11.41□□□□□ -0.58
VRK3-217ENST00000599538 RBM14Q96PK6 669 aaKnown RBP11.41□□□□□ -0.58
VRK3-217ENST00000599538 TBL2Q9Y4P3 447 aaKnown RBP11.41□□□□□ -0.58
VRK3-217ENST00000599538 LRRK2Q5S007 2527 aa11.4□□□□□ -0.58
VRK3-217ENST00000599538 FBN2P35556 2912 aa11.4□□□□□ -0.58
VRK3-217ENST00000599538 CD99P14209 185 aa11.4□□□□□ -0.58
VRK3-217ENST00000599538 PLP1P60201 277 aa11.4□□□□□ -0.58
VRK3-217ENST00000599538 RASL11BQ9BPW5 248 aa11.4□□□□□ -0.58
VRK3-217ENST00000599538 HSPB9Q9BQS6 159 aa11.4□□□□□ -0.58
VRK3-217ENST00000599538 SRD5A3Q9H8P0 318 aa11.4□□□□□ -0.58
VRK3-217ENST00000599538 SH2D7A6NKC9 451 aaPredicted RBP11.39□□□□□ -0.59
VRK3-217ENST00000599538 IGLV2-8P01709 118 aa11.39□□□□□ -0.59
VRK3-217ENST00000599538 RANP62826 216 aaKnown RBP11.39□□□□□ -0.59
VRK3-217ENST00000599538 GFI1BQ5VTD9 330 aa11.39□□□□□ -0.59
VRK3-217ENST00000599538 ZNF329Q86UD4 541 aa11.39□□□□□ -0.59
VRK3-217ENST00000599538 OR10G8Q8NGN5 311 aa11.39□□□□□ -0.59
VRK3-217ENST00000599538 SGMS2Q8NHU3 365 aa11.39□□□□□ -0.59
VRK3-217ENST00000599538 C10orf105Q8TEF2 133 aa11.39□□□□□ -0.59
VRK3-217ENST00000599538 CENPEQ02224 2701 aa11.39□□□□□ -0.59
VRK3-217ENST00000599538 IGLV11-55A0A075B6I3 123 aa11.39□□□□□ -0.59
VRK3-217ENST00000599538 IGHV4-30-2A0A087WSY4 118 aa11.39□□□□□ -0.59
VRK3-217ENST00000599538 IFITM10A6NMD0 228 aa11.39□□□□□ -0.59
VRK3-217ENST00000599538 NPFFO15130 113 aa11.39□□□□□ -0.59
VRK3-217ENST00000599538 GP9P14770 177 aa11.39□□□□□ -0.59
VRK3-217ENST00000599538 SRP14P37108 136 aaKnown RBP11.39□□□□□ -0.59
VRK3-217ENST00000599538 GNG4P50150 75 aa11.39□□□□□ -0.59
VRK3-217ENST00000599538 ATP5J2P56134 94 aa11.39□□□□□ -0.59
VRK3-217ENST00000599538 GNG5P63218 68 aa11.39□□□□□ -0.59
VRK3-217ENST00000599538 BCL6BQ8N143 479 aaPredicted RBP11.39□□□□□ -0.59
VRK3-217ENST00000599538 NHLRC2Q8NBF2 726 aa11.39□□□□□ -0.59
VRK3-217ENST00000599538 TRAV34A0A0B4J273 112 aa11.38□□□□□ -0.59
VRK3-217ENST00000599538 PPP5D1E7EU14 171 aa11.38□□□□□ -0.59
VRK3-217ENST00000599538 F8W735 103 aaPredicted RBP11.38□□□□□ -0.59
VRK3-217ENST00000599538 IGHV3-23P01764 117 aa11.38□□□□□ -0.59
VRK3-217ENST00000599538 MYCNOSP40205 109 aa11.38□□□□□ -0.59
VRK3-217ENST00000599538 IGF2BP2-AS1Q96M15 143 aa11.38□□□□□ -0.59
VRK3-217ENST00000599538 POLQO75417 2590 aa11.38□□□□□ -0.59
VRK3-217ENST00000599538 NPIPB5A8MRT5 1133 aa11.38□□□□□ -0.59
VRK3-217ENST00000599538 VWC2LB2RUY7 222 aa11.38□□□□□ -0.59
VRK3-217ENST00000599538 FAM106CPP0CH98 169 aa11.38□□□□□ -0.59
VRK3-217ENST00000599538 RD3LP0DJH9 198 aa11.38□□□□□ -0.59
VRK3-217ENST00000599538 HOXA5P20719 270 aa11.38□□□□□ -0.59
VRK3-217ENST00000599538 PAX8Q06710 450 aa11.38□□□□□ -0.59
VRK3-217ENST00000599538 SRSF1Q07955 248 aaKnown RBP eCLIP11.38□□□□□ -0.59
VRK3-217ENST00000599538 TTC9CQ8N5M4 171 aa11.38□□□□□ -0.59
VRK3-217ENST00000599538 PIMREGQ9BSJ6 248 aa11.38□□□□□ -0.59
VRK3-217ENST00000599538 RNASE7Q9H1E1 156 aaKnown RBP11.38□□□□□ -0.59
VRK3-217ENST00000599538 POLR3KQ9Y2Y1 108 aaPredicted RBP11.38□□□□□ -0.59
VRK3-217ENST00000599538 ZNF98A6NK75 572 aa11.37□□□□□ -0.59
VRK3-217ENST00000599538 LINC01548A6NM66 108 aa11.37□□□□□ -0.59
VRK3-217ENST00000599538 PPP1R2P9O14990 202 aa11.37□□□□□ -0.59
VRK3-217ENST00000599538 NDUFB8O95169 186 aa11.37□□□□□ -0.59
VRK3-217ENST00000599538 NBEAP1P0C6P0 100 aa11.37□□□□□ -0.59
VRK3-217ENST00000599538 BRD3OSQ6XYD6 125 aa11.37□□□□□ -0.59
VRK3-217ENST00000599538 SGK494Q96LW2 274 aa11.37□□□□□ -0.59
VRK3-217ENST00000599538 C12orf57Q99622 126 aa11.37□□□□□ -0.59
VRK3-217ENST00000599538 SLC25A39Q9BZJ4 359 aaPredicted RBP11.37□□□□□ -0.59
VRK3-217ENST00000599538 MRPL27Q9P0M9 148 aaKnown RBP11.37□□□□□ -0.59
VRK3-217ENST00000599538 HIGD1AQ9Y241 93 aa11.37□□□□□ -0.59
VRK3-217ENST00000599538 SOX21Q9Y651 276 aaPredicted RBP11.37□□□□□ -0.59
VRK3-217ENST00000599538 LY96Q9Y6Y9 160 aa11.37□□□□□ -0.59
VRK3-217ENST00000599538 OR2J3O76001 311 aa11.36□□□□□ -0.59
VRK3-217ENST00000599538 ZNF600Q6ZNG1 722 aa11.36□□□□□ -0.59
VRK3-217ENST00000599538 ZNF320A2RRD8 509 aa11.36□□□□□ -0.59
VRK3-217ENST00000599538 PGPA6NDG6 321 aa11.36□□□□□ -0.59
VRK3-217ENST00000599538 PEX7O00628 323 aa11.36□□□□□ -0.59
VRK3-217ENST00000599538 ISLRO14498 428 aa11.36□□□□□ -0.59
VRK3-217ENST00000599538 ERVFC1-1P60608 527 aa11.36□□□□□ -0.59
VRK3-217ENST00000599538 FOXL1Q12952 345 aa11.36□□□□□ -0.59
VRK3-217ENST00000599538 PDZD11Q5EBL8 140 aa11.36□□□□□ -0.59
VRK3-217ENST00000599538 KCNIP4Q6PIL6 250 aa11.36□□□□□ -0.59
VRK3-217ENST00000599538 ZNF491Q8N8L2 437 aa11.36□□□□□ -0.59
VRK3-217ENST00000599538 V9GYV3 84 aa11.36□□□□□ -0.59
VRK3-217ENST00000599538 UBR5O95071 2799 aaPredicted RBP11.36□□□□□ -0.59
VRK3-217ENST00000599538 TYMSP04818 313 aa11.35□□□□□ -0.59
VRK3-217ENST00000599538 FRMD6-AS1P0C7T7 363 aa11.35□□□□□ -0.59
VRK3-217ENST00000599538 PRB4P10163 310 aaPredicted RBP11.35□□□□□ -0.59
VRK3-217ENST00000599538 ZNF843Q8N446 348 aa11.35□□□□□ -0.59
VRK3-217ENST00000599538 OR1L6Q8NGR2 347 aa11.35□□□□□ -0.59
VRK3-217ENST00000599538 TRAV40A0A0B4J280 105 aa11.35□□□□□ -0.59
VRK3-217ENST00000599538 ATP6V0E1O15342 81 aa11.35□□□□□ -0.59
VRK3-217ENST00000599538 TGOLN2O43493 480 aa11.35□□□□□ -0.59
VRK3-217ENST00000599538 HLA-DRB1P01911 266 aa11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms