RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 LINC00299Q6ZSB3 139 aa11.16□□□□□ -0.62
TRIM28-205ENST00000595028 WFDC3Q8IUB2 231 aa11.16□□□□□ -0.62
TRIM28-205ENST00000595028 KIR2DL5AQ8N109 375 aa11.16□□□□□ -0.62
TRIM28-205ENST00000595028 STXBP6Q8NFX7 210 aa11.16□□□□□ -0.62
TRIM28-205ENST00000595028 KIR2DL5BQ8NHK3 375 aa11.16□□□□□ -0.62
TRIM28-205ENST00000595028 OVOL2Q9BRP0 275 aa11.16□□□□□ -0.62
TRIM28-205ENST00000595028 CCDC32Q9BV29 185 aa11.16□□□□□ -0.62
TRIM28-205ENST00000595028 RABAC1Q9UI14 185 aa11.16□□□□□ -0.62
TRIM28-205ENST00000595028 PAIP2BQ9ULR5 123 aaKnown RBP11.16□□□□□ -0.62
TRIM28-205ENST00000595028 IGKV1D-37A0A075B6S9 117 aa11.15□□□□□ -0.62
TRIM28-205ENST00000595028 ZFP92A6NM28 416 aa11.15□□□□□ -0.62
TRIM28-205ENST00000595028 MPTX1A8MV57 137 aa11.15□□□□□ -0.62
TRIM28-205ENST00000595028 WRBO00258 174 aa11.15□□□□□ -0.62
TRIM28-205ENST00000595028 UBE2CO00762 179 aa11.15□□□□□ -0.62
TRIM28-205ENST00000595028 RPP30P78346 268 aaKnown RBP11.15□□□□□ -0.62
TRIM28-205ENST00000595028 DEFB135Q30KP9 77 aa11.15□□□□□ -0.62
TRIM28-205ENST00000595028 Q6ZWC4 215 aa11.15□□□□□ -0.62
TRIM28-205ENST00000595028 FAM24BQ8N5W8 94 aa11.15□□□□□ -0.62
TRIM28-205ENST00000595028 STPG3Q8N7X2 389 aa11.15□□□□□ -0.62
TRIM28-205ENST00000595028 OR51G1Q8NGK1 321 aa11.15□□□□□ -0.62
TRIM28-205ENST00000595028 GLMPQ8WWB7 406 aa11.15□□□□□ -0.62
TRIM28-205ENST00000595028 RNF125Q96EQ8 232 aa11.15□□□□□ -0.62
TRIM28-205ENST00000595028 TP53TG1Q9Y2A0 90 aa11.15□□□□□ -0.62
TRIM28-205ENST00000595028 HELTA6NFD8 242 aa11.14□□□□□ -0.63
TRIM28-205ENST00000595028 PRSS46E5RG02 174 aa11.14□□□□□ -0.63
TRIM28-205ENST00000595028 H3BP45 60 aa11.14□□□□□ -0.63
TRIM28-205ENST00000595028 K7EQG2 157 aa11.14□□□□□ -0.63
TRIM28-205ENST00000595028 IFNA21P01568 189 aa11.14□□□□□ -0.63
TRIM28-205ENST00000595028 EIF2B2P49770 351 aaKnown RBP11.14□□□□□ -0.63
TRIM28-205ENST00000595028 DEFB131AP59861 70 aa11.14□□□□□ -0.63
TRIM28-205ENST00000595028 C16orf54Q6UWD8 224 aa11.14□□□□□ -0.63
TRIM28-205ENST00000595028 OR4D5Q8NGN0 318 aa11.14□□□□□ -0.63
TRIM28-205ENST00000595028 MITD1Q8WV92 249 aa11.14□□□□□ -0.63
TRIM28-205ENST00000595028 NUP62P37198 522 aaPredicted RBP11.13□□□□□ -0.63
TRIM28-205ENST00000595028 NKX2-1P43699 371 aaPredicted RBP11.13□□□□□ -0.63
TRIM28-205ENST00000595028 POLR2GP62487 172 aaKnown RBP eCLIP11.13□□□□□ -0.63
TRIM28-205ENST00000595028 ID3Q02535 119 aa11.13□□□□□ -0.63
TRIM28-205ENST00000595028 ZNF90Q03938 601 aa11.13□□□□□ -0.63
TRIM28-205ENST00000595028 THAP8Q8NA92 274 aa11.13□□□□□ -0.63
TRIM28-205ENST00000595028 DCANP1Q8TF63 244 aa11.13□□□□□ -0.63
TRIM28-205ENST00000595028 AGRNO00468 2067 aa11.12□□□□□ -0.63
TRIM28-205ENST00000595028 IGKV1OR2-108A0A075B7D4 117 aa11.12□□□□□ -0.63
TRIM28-205ENST00000595028 SPRY2O43597 315 aa11.12□□□□□ -0.63
TRIM28-205ENST00000595028 BUB3O43684 328 aa11.12□□□□□ -0.63
TRIM28-205ENST00000595028 SSSCA1O60232 199 aa11.12□□□□□ -0.63
TRIM28-205ENST00000595028 TCRBP04435 133 aa11.12□□□□□ -0.63
TRIM28-205ENST00000595028 FABP1P07148 127 aa11.12□□□□□ -0.63
TRIM28-205ENST00000595028 SPANXN5Q5MJ07 72 aa11.12□□□□□ -0.63
TRIM28-205ENST00000595028 LEMD1Q68G75 181 aa11.12□□□□□ -0.63
TRIM28-205ENST00000595028 OR8G2PQ6IF36 304 aa11.12□□□□□ -0.63
TRIM28-205ENST00000595028 S100ZQ8WXG8 99 aa11.12□□□□□ -0.63
TRIM28-205ENST00000595028 TRGV9Q99603 122 aa11.12□□□□□ -0.63
TRIM28-205ENST00000595028 PBDC1Q9BVG4 233 aa11.12□□□□□ -0.63
TRIM28-205ENST00000595028 NUDT15Q9NV35 164 aa11.12□□□□□ -0.63
TRIM28-205ENST00000595028 STRAPQ9Y3F4 350 aaKnown RBP11.12□□□□□ -0.63
TRIM28-205ENST00000595028 TRAV6A0A075B6T7 132 aa11.11□□□□□ -0.63
TRIM28-205ENST00000595028 ZNF688P0C7X2 276 aa11.11□□□□□ -0.63
TRIM28-205ENST00000595028 AP2S1P53680 142 aaPredicted RBP11.11□□□□□ -0.63
TRIM28-205ENST00000595028 IAH1Q2TAA2 248 aaPredicted RBP11.11□□□□□ -0.63
TRIM28-205ENST00000595028 SIGLEC15Q6ZMC9 328 aa11.11□□□□□ -0.63
TRIM28-205ENST00000595028 ACOT7LQ6ZUV0 252 aa11.11□□□□□ -0.63
TRIM28-205ENST00000595028 IL17DQ8TAD2 202 aa11.11□□□□□ -0.63
TRIM28-205ENST00000595028 RNF183Q96D59 192 aa11.11□□□□□ -0.63
TRIM28-205ENST00000595028 ALMS1Q8TCU4 4167 aa11.1□□□□□ -0.63
TRIM28-205ENST00000595028 SCGB1D2O95969 90 aa11.1□□□□□ -0.63
TRIM28-205ENST00000595028 LYZP61626 148 aa11.1□□□□□ -0.63
TRIM28-205ENST00000595028 AKR1C1Q04828 323 aa11.1□□□□□ -0.63
TRIM28-205ENST00000595028 OR2F1Q13607 317 aa11.1□□□□□ -0.63
TRIM28-205ENST00000595028 ZBTB8BQ8NAP8 495 aaPredicted RBP11.1□□□□□ -0.63
TRIM28-205ENST00000595028 CSTL1Q9H114 145 aa11.1□□□□□ -0.63
TRIM28-205ENST00000595028 NRN1Q9NPD7 142 aa11.1□□□□□ -0.63
TRIM28-205ENST00000595028 PSENENQ9NZ42 101 aa11.1□□□□□ -0.63
TRIM28-205ENST00000595028 TBC1D24Q9ULP9 559 aa11.1□□□□□ -0.63
TRIM28-205ENST00000595028 SMIM8Q96KF7 97 aa11.09□□□□□ -0.63
TRIM28-205ENST00000595028 PTTG2Q9NZH5 202 aa11.09□□□□□ -0.63
TRIM28-205ENST00000595028 PFDN2Q9UHV9 154 aa11.09□□□□□ -0.63
TRIM28-205ENST00000595028 RCL1Q9Y2P8 373 aaKnown RBP11.09□□□□□ -0.63
TRIM28-205ENST00000595028 SNRPGP15A8MWD9 76 aa11.08□□□□□ -0.64
TRIM28-205ENST00000595028 CCSO14618 274 aa11.08□□□□□ -0.64
TRIM28-205ENST00000595028 CA1P00915 261 aaPredicted RBP11.08□□□□□ -0.64
TRIM28-205ENST00000595028 PAX9P55771 341 aa11.08□□□□□ -0.64
TRIM28-205ENST00000595028 ASAH1Q13510 395 aa11.08□□□□□ -0.64
TRIM28-205ENST00000595028 TMEM14EPQ6UXP3 125 aa11.08□□□□□ -0.64
TRIM28-205ENST00000595028 TRPT1Q86TN4 253 aaKnown RBP11.08□□□□□ -0.64
TRIM28-205ENST00000595028 STHQ8IWL8 128 aa11.08□□□□□ -0.64
TRIM28-205ENST00000595028 ZNF431Q8TF32 576 aaPredicted RBP11.08□□□□□ -0.64
TRIM28-205ENST00000595028 GATAD1Q8WUU5 269 aa11.08□□□□□ -0.64
TRIM28-205ENST00000595028 RAB40CQ96S21 281 aa11.08□□□□□ -0.64
TRIM28-205ENST00000595028 SEC22CQ9BRL7 303 aa11.08□□□□□ -0.64
TRIM28-205ENST00000595028 WDR12Q9GZL7 423 aaKnown RBP11.08□□□□□ -0.64
TRIM28-205ENST00000595028 A0A0J9YWU9 116 aa11.07□□□□□ -0.64
TRIM28-205ENST00000595028 FAM240BA0A1B0GVZ2 78 aa11.07□□□□□ -0.64
TRIM28-205ENST00000595028 PMS2P5A8MQ11 134 aa11.07□□□□□ -0.64
TRIM28-205ENST00000595028 CFDP00746 253 aaPredicted RBP11.07□□□□□ -0.64
TRIM28-205ENST00000595028 H2AFB2P0C5Z0 115 aa11.07□□□□□ -0.64
TRIM28-205ENST00000595028 PSMG4Q5JS54 123 aa11.07□□□□□ -0.64
TRIM28-205ENST00000595028 MZT2BQ6NZ67 158 aa11.07□□□□□ -0.64
TRIM28-205ENST00000595028 SEPSECSQ9HD40 501 aaKnown RBP11.07□□□□□ -0.64
TRIM28-205ENST00000595028 GSKIPQ9P0R6 139 aa11.07□□□□□ -0.64
TRIM28-205ENST00000595028 SMCO3A2RU48 225 aa11.06□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms