RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 GP9P14770 177 aa15.59■□□□□ 0.09
CLIP3-206ENST00000593074 TMEM183AQ8IXX5 376 aa15.59■□□□□ 0.09
CLIP3-206ENST00000593074 TOX4O94842 621 aa15.58■□□□□ 0.09
CLIP3-206ENST00000593074 PSG1P11464 419 aa15.58■□□□□ 0.09
CLIP3-206ENST00000593074 S100A12P80511 92 aa15.58■□□□□ 0.09
CLIP3-206ENST00000593074 OSTCQ9NRP0 149 aa15.58■□□□□ 0.09
CLIP3-206ENST00000593074 CFAP46Q8IYW2 2715 aa15.58■□□□□ 0.08
CLIP3-206ENST00000593074 PEX7O00628 323 aa15.58■□□□□ 0.08
CLIP3-206ENST00000593074 ISLRO14498 428 aa15.58■□□□□ 0.08
CLIP3-206ENST00000593074 IGKV1-17P01599 117 aa15.58■□□□□ 0.08
CLIP3-206ENST00000593074 PDZD11Q5EBL8 140 aa15.58■□□□□ 0.08
CLIP3-206ENST00000593074 CCL19Q99731 98 aa15.58■□□□□ 0.08
CLIP3-206ENST00000593074 CNN1P51911 297 aaKnown RBP15.57■□□□□ 0.08
CLIP3-206ENST00000593074 RPEL1Q2QD12 228 aa15.57■□□□□ 0.08
CLIP3-206ENST00000593074 ZNF562Q6V9R5 426 aa15.57■□□□□ 0.08
CLIP3-206ENST00000593074 RASL11BQ9BPW5 248 aa15.57■□□□□ 0.08
CLIP3-206ENST00000593074 FAM103A1Q9BTL3 118 aaKnown RBP15.57■□□□□ 0.08
CLIP3-206ENST00000593074 HIGD1AQ9Y241 93 aa15.57■□□□□ 0.08
CLIP3-206ENST00000593074 TBL2Q9Y4P3 447 aaKnown RBP15.57■□□□□ 0.08
CLIP3-206ENST00000593074 XKRY2A2RUG3 117 aa15.56■□□□□ 0.08
CLIP3-206ENST00000593074 NPIPB5A8MRT5 1133 aa15.56■□□□□ 0.08
CLIP3-206ENST00000593074 CACNA1BQ00975 2339 aa15.56■□□□□ 0.08
CLIP3-206ENST00000593074 NIT2Q9NQR4 276 aa15.56■□□□□ 0.08
CLIP3-206ENST00000593074 PRB1P04280 392 aa15.56■□□□□ 0.08
CLIP3-206ENST00000593074 YPEL3P61236 119 aaPredicted RBP15.56■□□□□ 0.08
CLIP3-206ENST00000593074 OR10D4PQ8NGN7 298 aa15.56■□□□□ 0.08
CLIP3-206ENST00000593074 SPOCK3Q9BQ16 436 aa15.56■□□□□ 0.08
CLIP3-206ENST00000593074 RNASE7Q9H1E1 156 aaKnown RBP15.56■□□□□ 0.08
CLIP3-206ENST00000593074 TRAPPC1Q9Y5R8 145 aa15.56■□□□□ 0.08
CLIP3-206ENST00000593074 NBEAP1P0C6P0 100 aa15.55■□□□□ 0.08
CLIP3-206ENST00000593074 RNF224P0DH78 156 aa15.55■□□□□ 0.08
CLIP3-206ENST00000593074 UBE2E1P51965 193 aa15.55■□□□□ 0.08
CLIP3-206ENST00000593074 LYZP61626 148 aa15.55■□□□□ 0.08
CLIP3-206ENST00000593074 CX3CL1P78423 397 aa15.55■□□□□ 0.08
CLIP3-206ENST00000593074 PYY3Q5JQD4 70 aa15.55■□□□□ 0.08
CLIP3-206ENST00000593074 ASPHD1Q5U4P2 390 aa15.55■□□□□ 0.08
CLIP3-206ENST00000593074 ARPC1AQ92747 370 aa15.55■□□□□ 0.08
CLIP3-206ENST00000593074 LINC00479Q96M42 142 aa15.55■□□□□ 0.08
CLIP3-206ENST00000593074 TBX15Q96SF7 602 aa15.55■□□□□ 0.08
CLIP3-206ENST00000593074 HIST1H2BLQ99880 126 aa15.55■□□□□ 0.08
CLIP3-206ENST00000593074 RANP62826 216 aaKnown RBP15.55■□□□□ 0.08
CLIP3-206ENST00000593074 NDPQ00604 133 aa15.55■□□□□ 0.08
CLIP3-206ENST00000593074 RBM14Q96PK6 669 aaKnown RBP15.55■□□□□ 0.08
CLIP3-206ENST00000593074 FABP1P07148 127 aa15.54■□□□□ 0.08
CLIP3-206ENST00000593074 FABP4P15090 132 aa15.54■□□□□ 0.08
CLIP3-206ENST00000593074 BLNKQ8WV28 456 aa15.54■□□□□ 0.08
CLIP3-206ENST00000593074 AJUBAQ96IF1 538 aa15.54■□□□□ 0.08
CLIP3-206ENST00000593074 MRPL27Q9P0M9 148 aaKnown RBP15.54■□□□□ 0.08
CLIP3-206ENST00000593074 IGLV11-55A0A075B6I3 123 aa15.53■□□□□ 0.08
CLIP3-206ENST00000593074 NCBP2LA6PVI3 153 aaKnown RBP15.53■□□□□ 0.08
CLIP3-206ENST00000593074 RD3LP0DJH9 198 aa15.53■□□□□ 0.08
CLIP3-206ENST00000593074 IBA57Q5T440 356 aaKnown RBP15.53■□□□□ 0.08
CLIP3-206ENST00000593074 LEMD1Q68G75 181 aa15.53■□□□□ 0.08
CLIP3-206ENST00000593074 FAM168AQ92567 244 aa15.53■□□□□ 0.08
CLIP3-206ENST00000593074 BBC3Q96PG8 261 aaPredicted RBP15.53■□□□□ 0.08
CLIP3-206ENST00000593074 FANCD2OSQ96PS1 177 aa15.53■□□□□ 0.08
CLIP3-206ENST00000593074 PIMREGQ9BSJ6 248 aa15.53■□□□□ 0.08
CLIP3-206ENST00000593074 SLC25A39Q9BZJ4 359 aaPredicted RBP15.53■□□□□ 0.08
CLIP3-206ENST00000593074 TMEM14CQ9P0S9 112 aa15.53■□□□□ 0.08
CLIP3-206ENST00000593074 EPDR1Q9UM22 224 aa15.53■□□□□ 0.08
CLIP3-206ENST00000593074 SNRPCP09234 159 aaKnown RBP15.53■□□□□ 0.08
CLIP3-206ENST00000593074 MGST1P10620 155 aaKnown RBP15.53■□□□□ 0.08
CLIP3-206ENST00000593074 HIST1H1BP16401 226 aaKnown RBP15.53■□□□□ 0.08
CLIP3-206ENST00000593074 TMEM11P17152 192 aa15.53■□□□□ 0.08
CLIP3-206ENST00000593074 TTC9CQ8N5M4 171 aa15.53■□□□□ 0.08
CLIP3-206ENST00000593074 TMEM183BQ1AE95 376 aa15.52■□□□□ 0.08
CLIP3-206ENST00000593074 ZNF600Q6ZNG1 722 aa15.52■□□□□ 0.08
CLIP3-206ENST00000593074 ZNF48Q96MX3 618 aaPredicted RBP15.52■□□□□ 0.08
CLIP3-206ENST00000593074 KLF12Q9Y4X4 402 aa15.52■□□□□ 0.08
CLIP3-206ENST00000593074 TOMM40O96008 361 aa15.52■□□□□ 0.07
CLIP3-206ENST00000593074 SLC25A5P05141 298 aaKnown RBP15.52■□□□□ 0.07
CLIP3-206ENST00000593074 GNG5P63218 68 aa15.52■□□□□ 0.07
CLIP3-206ENST00000593074 KLF17Q5JT82 389 aaPredicted RBP15.52■□□□□ 0.07
CLIP3-206ENST00000593074 PACRGQ96M98 296 aaPredicted RBP15.52■□□□□ 0.07
CLIP3-206ENST00000593074 LPAR2Q9HBW0 351 aa15.52■□□□□ 0.07
CLIP3-206ENST00000593074 POLR3KQ9Y2Y1 108 aaPredicted RBP15.52■□□□□ 0.07
CLIP3-206ENST00000593074 TRAV34A0A0B4J273 112 aa15.51■□□□□ 0.07
CLIP3-206ENST00000593074 PGPA6NDG6 321 aa15.51■□□□□ 0.07
CLIP3-206ENST00000593074 OR8I2Q8N0Y5 310 aa15.51■□□□□ 0.07
CLIP3-206ENST00000593074 C5orf17Q8NAS9 161 aa15.51■□□□□ 0.07
CLIP3-206ENST00000593074 NHLRC2Q8NBF2 726 aa15.51■□□□□ 0.07
CLIP3-206ENST00000593074 SPTAN1Q13813 2472 aaKnown RBP15.51■□□□□ 0.07
CLIP3-206ENST00000593074 AKAP6Q13023 2319 aa15.51■□□□□ 0.07
CLIP3-206ENST00000593074 FAM106CPP0CH98 169 aa15.5■□□□□ 0.07
CLIP3-206ENST00000593074 FAM231DQ6ZW35 169 aa15.5■□□□□ 0.07
CLIP3-206ENST00000593074 BAGE2Q86Y30 109 aa15.5■□□□□ 0.07
CLIP3-206ENST00000593074 SMIM12Q96EX1 92 aa15.5■□□□□ 0.07
CLIP3-206ENST00000593074 ATG101Q9BSB4 218 aa15.5■□□□□ 0.07
CLIP3-206ENST00000593074 ABCA1O95477 2261 aa15.5■□□□□ 0.07
CLIP3-206ENST00000593074 SMIM27A0A1W2PRY6 76 aa15.5■□□□□ 0.07
CLIP3-206ENST00000593074 NDUFS8O00217 210 aa15.5■□□□□ 0.07
CLIP3-206ENST00000593074 AMBPP02760 352 aa15.5■□□□□ 0.07
CLIP3-206ENST00000593074 ADMP35318 185 aa15.5■□□□□ 0.07
CLIP3-206ENST00000593074 SAA4P35542 130 aa15.5■□□□□ 0.07
CLIP3-206ENST00000593074 Q8N9W7 124 aa15.5■□□□□ 0.07
CLIP3-206ENST00000593074 C10orf105Q8TEF2 133 aa15.5■□□□□ 0.07
CLIP3-206ENST00000593074 SHANK2-AS3Q9BTD1 123 aa15.5■□□□□ 0.07
CLIP3-206ENST00000593074 Q9H3A6 140 aa15.5■□□□□ 0.07
CLIP3-206ENST00000593074 GSN-AS1Q9NRJ2 163 aa15.5■□□□□ 0.07
CLIP3-206ENST00000593074 USP24Q9UPU5 2620 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms