RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 TMUB2Q71RG4 321 aa4.12□□□□□ -1.75
LIG3-210ENST00000588109 HAPLN4Q86UW8 402 aa4.12□□□□□ -1.75
LIG3-210ENST00000588109 C11orf44Q8N8P7 122 aa4.12□□□□□ -1.75
LIG3-210ENST00000588109 SCGB1C1Q8TD33 95 aa4.12□□□□□ -1.75
LIG3-210ENST00000588109 VN1R17PQ8TDU5 208 aa4.12□□□□□ -1.75
LIG3-210ENST00000588109 SCARB1Q8WTV0 552 aa4.12□□□□□ -1.75
LIG3-210ENST00000588109 BSCL2Q96G97 398 aaPredicted RBP4.12□□□□□ -1.75
LIG3-210ENST00000588109 USMG5Q96IX5 58 aa4.12□□□□□ -1.75
LIG3-210ENST00000588109 OR5B12Q96R08 314 aa4.12□□□□□ -1.75
LIG3-210ENST00000588109 GGACTQ9BVM4 153 aa4.12□□□□□ -1.75
LIG3-210ENST00000588109 ZNF471Q9BX82 626 aaPredicted RBP4.12□□□□□ -1.75
LIG3-210ENST00000588109 KLK15Q9H2R5 256 aa4.12□□□□□ -1.75
LIG3-210ENST00000588109 FNDC4Q9H6D8 234 aaPredicted RBP4.12□□□□□ -1.75
LIG3-210ENST00000588109 GNB4Q9HAV0 340 aa4.12□□□□□ -1.75
LIG3-210ENST00000588109 NPVFQ9HCQ7 196 aa4.12□□□□□ -1.75
LIG3-210ENST00000588109 SEPSECSQ9HD40 501 aaKnown RBP4.12□□□□□ -1.75
LIG3-210ENST00000588109 GAR1Q9NY12 217 aaKnown RBP4.12□□□□□ -1.75
LIG3-210ENST00000588109 C21orf62Q9NYP8 219 aa4.12□□□□□ -1.75
LIG3-210ENST00000588109 TRBV7-1A0A0A6YYK4 115 aa4.11□□□□□ -1.75
LIG3-210ENST00000588109 TRBV9A0A0B4J1U6 114 aa4.11□□□□□ -1.75
LIG3-210ENST00000588109 OR2T8A6NH00 312 aa4.11□□□□□ -1.75
LIG3-210ENST00000588109 PRSS46E5RG02 174 aa4.11□□□□□ -1.75
LIG3-210ENST00000588109 FNDC10F2Z333 226 aa4.11□□□□□ -1.75
LIG3-210ENST00000588109 NUPL2O15504 423 aaKnown RBP4.11□□□□□ -1.75
LIG3-210ENST00000588109 CLN5O75503 358 aa4.11□□□□□ -1.75
LIG3-210ENST00000588109 JTBO76095 146 aa4.11□□□□□ -1.75
LIG3-210ENST00000588109 FABP1P07148 127 aa4.11□□□□□ -1.75
LIG3-210ENST00000588109 CD28P10747 220 aa4.11□□□□□ -1.75
LIG3-210ENST00000588109 GPR183P32249 361 aa4.11□□□□□ -1.75
LIG3-210ENST00000588109 EIF5AP63241 154 aaKnown RBP4.11□□□□□ -1.75
LIG3-210ENST00000588109 RAB31Q13636 194 aa4.11□□□□□ -1.75
LIG3-210ENST00000588109 GAMTQ14353 236 aa4.11□□□□□ -1.75
LIG3-210ENST00000588109 OPCMLQ14982 345 aa4.11□□□□□ -1.75
LIG3-210ENST00000588109 RPL7L1Q6DKI1 246 aaKnown RBP4.11□□□□□ -1.75
LIG3-210ENST00000588109 WDR73Q6P4I2 378 aa4.11□□□□□ -1.75
LIG3-210ENST00000588109 BTNL8Q6UX41 500 aa4.11□□□□□ -1.75
LIG3-210ENST00000588109 CLEC19AQ6UXS0 136 aa4.11□□□□□ -1.75
LIG3-210ENST00000588109 IQCF2Q8IXL9 164 aa4.11□□□□□ -1.75
LIG3-210ENST00000588109 ZNF709Q8N972 641 aa4.11□□□□□ -1.75
LIG3-210ENST00000588109 OR4X1Q8NH49 305 aa4.11□□□□□ -1.75
LIG3-210ENST00000588109 NPIPB3Q92617 1050 aa4.11□□□□□ -1.75
LIG3-210ENST00000588109 RNF125Q96EQ8 232 aa4.11□□□□□ -1.75
LIG3-210ENST00000588109 UBE2E2Q96LR5 201 aa4.11□□□□□ -1.75
LIG3-210ENST00000588109 TXN2Q99757 166 aa4.11□□□□□ -1.75
LIG3-210ENST00000588109 WFDC1Q9HC57 220 aa4.11□□□□□ -1.75
LIG3-210ENST00000588109 TEP1Q99973 2627 aaKnown RBP4.1□□□□□ -1.75
LIG3-210ENST00000588109 TRAV30A0A087WSZ9 112 aa4.1□□□□□ -1.75
LIG3-210ENST00000588109 C17orf112F2Z3M2 114 aa4.1□□□□□ -1.75
LIG3-210ENST00000588109 MPDU1O75352 247 aa4.1□□□□□ -1.75
LIG3-210ENST00000588109 SLPIP03973 132 aa4.1□□□□□ -1.75
LIG3-210ENST00000588109 CLEC3BP05452 202 aa4.1□□□□□ -1.75
LIG3-210ENST00000588109 LGALS1P09382 135 aaKnown RBP4.1□□□□□ -1.75
LIG3-210ENST00000588109 TPT1P13693 172 aaKnown RBP4.1□□□□□ -1.75
LIG3-210ENST00000588109 GCSHP23434 173 aa4.1□□□□□ -1.75
LIG3-210ENST00000588109 OR10J1P30954 320 aa4.1□□□□□ -1.75
LIG3-210ENST00000588109 ARL3P36405 182 aa4.1□□□□□ -1.75
LIG3-210ENST00000588109 CAMLGP49069 296 aa4.1□□□□□ -1.75
LIG3-210ENST00000588109 PROK1P58294 105 aa4.1□□□□□ -1.75
LIG3-210ENST00000588109 VWC2Q2TAL6 325 aa4.1□□□□□ -1.75
LIG3-210ENST00000588109 KLK9Q2XQG4 91 aa4.1□□□□□ -1.75
LIG3-210ENST00000588109 BEAN1Q3B7T3 259 aa4.1□□□□□ -1.75
LIG3-210ENST00000588109 KRTAP24-1Q3LI83 254 aa4.1□□□□□ -1.75
LIG3-210ENST00000588109 TIGITQ495A1 244 aa4.1□□□□□ -1.75
LIG3-210ENST00000588109 AWAT1Q58HT5 328 aa4.1□□□□□ -1.75
LIG3-210ENST00000588109 LAMTOR1Q6IAA8 161 aa4.1□□□□□ -1.75
LIG3-210ENST00000588109 TMEM144Q7Z5S9 345 aa4.1□□□□□ -1.75
LIG3-210ENST00000588109 SLC51BQ86UW2 128 aa4.1□□□□□ -1.75
LIG3-210ENST00000588109 PRIMA1Q86XR5 153 aa4.1□□□□□ -1.75
LIG3-210ENST00000588109 ZNF491Q8N8L2 437 aa4.1□□□□□ -1.75
LIG3-210ENST00000588109 HSD17B11Q8NBQ5 300 aa4.1□□□□□ -1.75
LIG3-210ENST00000588109 TMEM116Q8NCL8 245 aa4.1□□□□□ -1.75
LIG3-210ENST00000588109 KLHL30-AS1Q8NEE0 82 aa4.1□□□□□ -1.75
LIG3-210ENST00000588109 ZNF502Q8TBZ5 544 aa4.1□□□□□ -1.75
LIG3-210ENST00000588109 TMEM158Q8WZ71 300 aa4.1□□□□□ -1.75
LIG3-210ENST00000588109 CITED2Q99967 270 aaPredicted RBP4.1□□□□□ -1.75
LIG3-210ENST00000588109 MLST8Q9BVC4 326 aa4.1□□□□□ -1.75
LIG3-210ENST00000588109 C19orf24Q9BVV8 132 aa4.1□□□□□ -1.75
LIG3-210ENST00000588109 NPCDR1Q9BY65 106 aa4.1□□□□□ -1.75
LIG3-210ENST00000588109 KRTAP4-11Q9BYQ6 195 aa4.1□□□□□ -1.75
LIG3-210ENST00000588109 WDR61Q9GZS3 305 aaKnown RBP4.1□□□□□ -1.75
LIG3-210ENST00000588109 KCNIP2Q9NS61 270 aa4.1□□□□□ -1.75
LIG3-210ENST00000588109 MRPL36Q9P0J6 103 aaKnown RBP4.1□□□□□ -1.75
LIG3-210ENST00000588109 PEF1Q9UBV8 284 aaKnown RBP4.1□□□□□ -1.75
LIG3-210ENST00000588109 KLK9Q9UKQ9 250 aa4.1□□□□□ -1.75
LIG3-210ENST00000588109 WDR83OSQ9Y284 106 aa4.1□□□□□ -1.75
LIG3-210ENST00000588109 TSSC4Q9Y5U2 329 aaPredicted RBP4.1□□□□□ -1.75
LIG3-210ENST00000588109 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP4.09□□□□□ -1.75
LIG3-210ENST00000588109 PPP5D1E7EU14 171 aa4.09□□□□□ -1.75
LIG3-210ENST00000588109 AGPAT2O15120 278 aa4.09□□□□□ -1.75
LIG3-210ENST00000588109 TGOLN2O43493 480 aa4.09□□□□□ -1.75
LIG3-210ENST00000588109 GGCTO75223 188 aaKnown RBP4.09□□□□□ -1.75
LIG3-210ENST00000588109 YIF1AO95070 293 aa4.09□□□□□ -1.75
LIG3-210ENST00000588109 TRBV12-3P01733 135 aa4.09□□□□□ -1.75
LIG3-210ENST00000588109 IGLC1P0CG04 106 aa4.09□□□□□ -1.75
LIG3-210ENST00000588109 RD3LP0DJH9 198 aa4.09□□□□□ -1.75
LIG3-210ENST00000588109 ATP6V0CP27449 155 aa4.09□□□□□ -1.75
LIG3-210ENST00000588109 FCGR2BP31994 310 aaPredicted RBP4.09□□□□□ -1.75
LIG3-210ENST00000588109 CDX1P47902 265 aaPredicted RBP4.09□□□□□ -1.75
LIG3-210ENST00000588109 ELLP55199 621 aaPredicted RBP4.09□□□□□ -1.75
LIG3-210ENST00000588109 BLOC1S1P78537 153 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms