RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 TSHBP01222 138 aa5.36□□□□□ -1.55
VPS53-217ENST00000575100 RFX2P48378 723 aa5.36□□□□□ -1.55
VPS53-217ENST00000575100 RAB25P57735 213 aa5.36□□□□□ -1.55
VPS53-217ENST00000575100 LMO4P61968 165 aa5.36□□□□□ -1.55
VPS53-217ENST00000575100 PPP1R1AQ13522 171 aa5.36□□□□□ -1.55
VPS53-217ENST00000575100 EDDM3AQ14507 147 aa5.36□□□□□ -1.55
VPS53-217ENST00000575100 FCN2Q15485 313 aa5.36□□□□□ -1.55
VPS53-217ENST00000575100 TMEM97Q5BJF2 176 aa5.36□□□□□ -1.55
VPS53-217ENST00000575100 PYY3Q5JQD4 70 aa5.36□□□□□ -1.55
VPS53-217ENST00000575100 FAAP20Q6NZ36 180 aa5.36□□□□□ -1.55
VPS53-217ENST00000575100 FAM231DQ6ZW35 169 aa5.36□□□□□ -1.55
VPS53-217ENST00000575100 SUMF2Q8NBJ7 301 aa5.36□□□□□ -1.55
VPS53-217ENST00000575100 C11orf52Q96A22 123 aa5.36□□□□□ -1.55
VPS53-217ENST00000575100 CHST6Q9GZX3 395 aa5.36□□□□□ -1.55
VPS53-217ENST00000575100 TMEM106BQ9NUM4 274 aa5.36□□□□□ -1.55
VPS53-217ENST00000575100 RNF7Q9UBF6 113 aa5.36□□□□□ -1.55
VPS53-217ENST00000575100 AK3Q9UIJ7 227 aa5.36□□□□□ -1.55
VPS53-217ENST00000575100 ZNF222Q9UK12 451 aa5.36□□□□□ -1.55
VPS53-217ENST00000575100 MXRA5Q9NR99 2828 aa5.36□□□□□ -1.55
VPS53-217ENST00000575100 A0A0G2JLM5 398 aa5.36□□□□□ -1.55
VPS53-217ENST00000575100 GABARAPH6UMI1 98 aa5.36□□□□□ -1.55
VPS53-217ENST00000575100 PLA2G10O15496 165 aa5.36□□□□□ -1.55
VPS53-217ENST00000575100 PDCD6O75340 191 aa5.36□□□□□ -1.55
VPS53-217ENST00000575100 PRSS3P35030 304 aa5.36□□□□□ -1.55
VPS53-217ENST00000575100 MFAP2P55001 183 aa5.36□□□□□ -1.55
VPS53-217ENST00000575100 MRPS10P82664 201 aaKnown RBP5.36□□□□□ -1.55
VPS53-217ENST00000575100 CLEC12BQ2HXU8 276 aa5.36□□□□□ -1.55
VPS53-217ENST00000575100 Q8IYB0 196 aa5.36□□□□□ -1.55
VPS53-217ENST00000575100 OR4S1Q8NGB4 309 aa5.36□□□□□ -1.55
VPS53-217ENST00000575100 MEIKINA0A087WXM9 373 aa5.35□□□□□ -1.55
VPS53-217ENST00000575100 TRAV39A0A0B4J263 110 aa5.35□□□□□ -1.55
VPS53-217ENST00000575100 MSGN1A6NI15 193 aa5.35□□□□□ -1.55
VPS53-217ENST00000575100 A8MXK9 166 aa5.35□□□□□ -1.55
VPS53-217ENST00000575100 H7C417 338 aa5.35□□□□□ -1.55
VPS53-217ENST00000575100 DEGS1O15121 323 aa5.35□□□□□ -1.55
VPS53-217ENST00000575100 GSTZ1O43708 216 aaPredicted RBP5.35□□□□□ -1.55
VPS53-217ENST00000575100 GNG7O60262 68 aa5.35□□□□□ -1.55
VPS53-217ENST00000575100 ZNF737O75373 536 aa5.35□□□□□ -1.55
VPS53-217ENST00000575100 GYPAP02724 150 aa5.35□□□□□ -1.55
VPS53-217ENST00000575100 GIPP09681 153 aaPredicted RBP5.35□□□□□ -1.55
VPS53-217ENST00000575100 COL10A1Q03692 680 aa5.35□□□□□ -1.55
VPS53-217ENST00000575100 BAXQ07812 192 aa5.35□□□□□ -1.55
VPS53-217ENST00000575100 ICAM4Q14773 271 aa5.35□□□□□ -1.55
VPS53-217ENST00000575100 SRSF7Q16629 238 aaKnown RBP eCLIP5.35□□□□□ -1.55
VPS53-217ENST00000575100 MPV17LQ2QL34 196 aa5.35□□□□□ -1.55
VPS53-217ENST00000575100 TEX36Q5VZQ5 186 aa5.35□□□□□ -1.55
VPS53-217ENST00000575100 LYPD2Q6UXB3 125 aa5.35□□□□□ -1.55
VPS53-217ENST00000575100 TRAPPC6BQ86SZ2 158 aa5.35□□□□□ -1.55
VPS53-217ENST00000575100 FAM216BQ8N7L0 139 aa5.35□□□□□ -1.55
VPS53-217ENST00000575100 ASB13Q8WXK3 278 aa5.35□□□□□ -1.55
VPS53-217ENST00000575100 TMEM158Q8WZ71 300 aa5.35□□□□□ -1.55
VPS53-217ENST00000575100 CCL13Q99616 98 aa5.35□□□□□ -1.55
VPS53-217ENST00000575100 REG4Q9BYZ8 158 aa5.35□□□□□ -1.55
VPS53-217ENST00000575100 CST9LQ9H4G1 147 aa5.35□□□□□ -1.55
VPS53-217ENST00000575100 MTFP1Q9UDX5 166 aa5.35□□□□□ -1.55
VPS53-217ENST00000575100 TANC2Q9HCD6 1990 aa5.35□□□□□ -1.55
VPS53-217ENST00000575100 FOXH1O75593 365 aa5.35□□□□□ -1.55
VPS53-217ENST00000575100 GABRA2P47869 451 aa5.35□□□□□ -1.55
VPS53-217ENST00000575100 APOC4P55056 127 aa5.35□□□□□ -1.55
VPS53-217ENST00000575100 FABP9Q0Z7S8 132 aa5.35□□□□□ -1.55
VPS53-217ENST00000575100 ARFRP1Q13795 201 aa5.35□□□□□ -1.55
VPS53-217ENST00000575100 KLF9Q13886 244 aaPredicted RBP5.35□□□□□ -1.55
VPS53-217ENST00000575100 ZNF181Q2M3W8 571 aa5.35□□□□□ -1.55
VPS53-217ENST00000575100 ZNF525Q8N782 197 aa5.35□□□□□ -1.55
VPS53-217ENST00000575100 OR51G1Q8NGK1 321 aa5.35□□□□□ -1.55
VPS53-217ENST00000575100 OR10G8Q8NGN5 311 aa5.35□□□□□ -1.55
VPS53-217ENST00000575100 GAFA1Q96PS6 74 aa5.35□□□□□ -1.55
VPS53-217ENST00000575100 CTSZQ9UBR2 303 aa5.35□□□□□ -1.55
VPS53-217ENST00000575100 ZNF257Q9Y2Q1 563 aa5.35□□□□□ -1.55
VPS53-217ENST00000575100 IGLV5-37A0A075B6J1 123 aa5.34□□□□□ -1.55
VPS53-217ENST00000575100 CORTO00230 105 aa5.34□□□□□ -1.55
VPS53-217ENST00000575100 NAPSAO96009 420 aa5.34□□□□□ -1.55
VPS53-217ENST00000575100 IFNA7P01567 189 aa5.34□□□□□ -1.55
VPS53-217ENST00000575100 CD3DP04234 171 aa5.34□□□□□ -1.55
VPS53-217ENST00000575100 SPNP16150 400 aa5.34□□□□□ -1.55
VPS53-217ENST00000575100 RCC1P18754 421 aaPredicted RBP5.34□□□□□ -1.55
VPS53-217ENST00000575100 BTCP35070 178 aa5.34□□□□□ -1.55
VPS53-217ENST00000575100 ZNF66Q6ZN08 573 aa5.34□□□□□ -1.55
VPS53-217ENST00000575100 ZNF788Q6ZQV5 615 aa5.34□□□□□ -1.55
VPS53-217ENST00000575100 LINC00596Q86U02 117 aa5.34□□□□□ -1.55
VPS53-217ENST00000575100 OR10G9Q8NGN4 311 aa5.34□□□□□ -1.55
VPS53-217ENST00000575100 UBALD1Q8TB05 177 aa5.34□□□□□ -1.55
VPS53-217ENST00000575100 MRPL30Q8TCC3 161 aaKnown RBP5.34□□□□□ -1.55
VPS53-217ENST00000575100 KLK15Q9H2R5 256 aa5.34□□□□□ -1.55
VPS53-217ENST00000575100 VSIRQ9H7M9 311 aa5.34□□□□□ -1.55
VPS53-217ENST00000575100 SPANXA1Q9NS26 97 aa5.34□□□□□ -1.55
VPS53-217ENST00000575100 A0A096LNT2 108 aa5.33□□□□□ -1.56
VPS53-217ENST00000575100 MCRIP1C9JLW8 97 aa5.33□□□□□ -1.56
VPS53-217ENST00000575100 CRYBA1P05813 215 aa5.33□□□□□ -1.56
VPS53-217ENST00000575100 GPR6P46095 362 aaPredicted RBP5.33□□□□□ -1.56
VPS53-217ENST00000575100 PIGPP57054 158 aa5.33□□□□□ -1.56
VPS53-217ENST00000575100 FAM53AQ6NSI3 398 aaPredicted RBP5.33□□□□□ -1.56
VPS53-217ENST00000575100 ZNF497Q6ZNH5 498 aa5.33□□□□□ -1.56
VPS53-217ENST00000575100 GALMQ96C23 342 aa5.33□□□□□ -1.56
VPS53-217ENST00000575100 NKX6-2Q9C056 277 aaPredicted RBP5.33□□□□□ -1.56
VPS53-217ENST00000575100 COMMD9Q9P000 198 aa5.33□□□□□ -1.56
VPS53-217ENST00000575100 ANAPC10Q9UM13 185 aa5.33□□□□□ -1.56
VPS53-217ENST00000575100 K7N7A8 449 aa5.33□□□□□ -1.56
VPS53-217ENST00000575100 TOMM40O96008 361 aa5.33□□□□□ -1.56
VPS53-217ENST00000575100 PSG1P11464 419 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms