RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 DOCK4Q8N1I0 1966 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 FANCMQ8IYD8 2048 aa2.39□□□□□ -2.03
NUP88-209ENST00000574855 PTPRDP23468 1912 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 DENND4CQ5VZ89 1909 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 ATG2BQ96BY7 2078 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 IGLV8-61A0A075B6I0 122 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 LOC107984640A0A0U1RRK4 108 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 TRDV1A0A1B0GX56 115 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 B4DEV8 164 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 C5orf67F2Z3F1 127 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 LST1O00453 97 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 GSTZ1O43708 216 aaPredicted RBP2.38□□□□□ -2.03
NUP88-209ENST00000574855 OPN1SWP03999 348 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 APODP05090 189 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 CISD3P0C7P0 127 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 INAFM2P0DMQ5 153 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 BCL2P10415 239 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 NTF3P20783 257 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 CSRP1P21291 193 aaKnown RBP2.38□□□□□ -2.03
NUP88-209ENST00000574855 FGF7P21781 194 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 OR10J1P30954 320 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 DAPP51397 102 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 RPS11P62280 158 aaKnown RBP eCLIP2.38□□□□□ -2.03
NUP88-209ENST00000574855 CXCL6P80162 114 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 ZNF181Q2M3W8 571 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 KRTAP13-3Q3SY46 172 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 MRPL2Q5T653 305 aaKnown RBP2.38□□□□□ -2.03
NUP88-209ENST00000574855 TEX261Q6UWH6 196 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 C2orf66Q6UXQ4 117 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 Q6ZS49 121 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 TMUB2Q71RG4 321 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 WDR86Q86TI4 376 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 MDP1Q86V88 176 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 LHFPL1Q86WI0 220 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 SNX29P2Q8IUI4 249 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 LINC00471Q8N535 108 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 OR4C16Q8NGL9 310 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 OR10D4PQ8NGN7 298 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 OR1J4Q8NGS1 313 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 ZNF418Q8TF45 676 aaPredicted RBP2.38□□□□□ -2.03
NUP88-209ENST00000574855 S100ZQ8WXG8 99 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 ABHD14BQ96IU4 210 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 OR2A5Q96R48 311 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 SCN2AQ99250 2005 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 TIMM17AQ99595 171 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 NRIP2Q9BQI9 281 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 TM2D3Q9BRN9 247 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 PARP12Q9H0J9 701 aaKnown RBP2.38□□□□□ -2.03
NUP88-209ENST00000574855 GABARAPL1Q9H0R8 117 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 PTGES2Q9H7Z7 377 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 TVP23BQ9NYZ1 205 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 OR5AC2Q9NZP5 309 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 TAAR3PQ9P1P4 343 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 NYNRINQ9P2P1 1898 aaKnown RBP2.38□□□□□ -2.03
NUP88-209ENST00000574855 LAMTOR3Q9UHA4 124 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 CCL26Q9Y258 94 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 MYO16Q9Y6X6 1858 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 TICRRQ7Z2Z1 1910 aa2.38□□□□□ -2.03
NUP88-209ENST00000574855 NOTCH2Q04721 2471 aa2.37□□□□□ -2.03
NUP88-209ENST00000574855 PLXNB3Q9ULL4 1909 aa2.37□□□□□ -2.03
NUP88-209ENST00000574855 TRAV5A0A0B4J249 113 aa2.37□□□□□ -2.03
NUP88-209ENST00000574855 A0A0J9YXY3 114 aa2.37□□□□□ -2.03
NUP88-209ENST00000574855 J3QQQ9 107 aa2.37□□□□□ -2.03
NUP88-209ENST00000574855 J3QRK9 145 aa2.37□□□□□ -2.03
NUP88-209ENST00000574855 COX7A2LO14548 114 aa2.37□□□□□ -2.03
NUP88-209ENST00000574855 CCL25O15444 150 aa2.37□□□□□ -2.03
NUP88-209ENST00000574855 GABARAPO95166 117 aa2.37□□□□□ -2.03
NUP88-209ENST00000574855 IFNA17P01571 189 aa2.37□□□□□ -2.03
NUP88-209ENST00000574855 LINC00694P0DN24 101 aa2.37□□□□□ -2.03
NUP88-209ENST00000574855 CRHBPP24387 322 aa2.37□□□□□ -2.03
NUP88-209ENST00000574855 FKBP2P26885 142 aaKnown RBP2.37□□□□□ -2.03
NUP88-209ENST00000574855 OPRK1P41145 380 aa2.37□□□□□ -2.03
NUP88-209ENST00000574855 CA7P43166 264 aa2.37□□□□□ -2.03
NUP88-209ENST00000574855 EIF2B2P49770 351 aaKnown RBP2.37□□□□□ -2.03
NUP88-209ENST00000574855 CDK6Q00534 326 aa2.37□□□□□ -2.03
NUP88-209ENST00000574855 ZNF846Q147U1 533 aa2.37□□□□□ -2.03
NUP88-209ENST00000574855 ELOCQ15369 112 aa2.37□□□□□ -2.03
NUP88-209ENST00000574855 TMEM241Q24JQ0 296 aa2.37□□□□□ -2.03
NUP88-209ENST00000574855 NCMAPQ5T1S8 102 aa2.37□□□□□ -2.03
NUP88-209ENST00000574855 LYRM7Q5U5X0 104 aa2.37□□□□□ -2.03
NUP88-209ENST00000574855 MOB1BQ7L9L4 216 aa2.37□□□□□ -2.03
NUP88-209ENST00000574855 COMMD6Q7Z4G1 85 aa2.37□□□□□ -2.03
NUP88-209ENST00000574855 MSRB3Q8IXL7 192 aa2.37□□□□□ -2.03
NUP88-209ENST00000574855 ACBD7Q8N6N7 88 aa2.37□□□□□ -2.03
NUP88-209ENST00000574855 TCTEX1D1Q8N7M0 179 aa2.37□□□□□ -2.03
NUP88-209ENST00000574855 BPIFB6Q8NFQ5 453 aa2.37□□□□□ -2.03
NUP88-209ENST00000574855 SGMS2Q8NHU3 365 aa2.37□□□□□ -2.03
NUP88-209ENST00000574855 C7orf33Q8WU49 177 aa2.37□□□□□ -2.03
NUP88-209ENST00000574855 SFT2D1Q8WV19 159 aa2.37□□□□□ -2.03
NUP88-209ENST00000574855 RTN4IP1Q8WWV3 396 aaPredicted RBP2.37□□□□□ -2.03
NUP88-209ENST00000574855 MS4A6EQ96DS6 147 aa2.37□□□□□ -2.03
NUP88-209ENST00000574855 SLAMF6Q96DU3 332 aa2.37□□□□□ -2.03
NUP88-209ENST00000574855 VSIG2Q96IQ7 327 aa2.37□□□□□ -2.03
NUP88-209ENST00000574855 GPX7Q96SL4 187 aaPredicted RBP2.37□□□□□ -2.03
NUP88-209ENST00000574855 NRTNQ99748 197 aa2.37□□□□□ -2.03
NUP88-209ENST00000574855 RTL8AQ9BWD3 113 aa2.37□□□□□ -2.03
NUP88-209ENST00000574855 WDR61Q9GZS3 305 aaKnown RBP2.37□□□□□ -2.03
NUP88-209ENST00000574855 TAF9BQ9HBM6 251 aa2.37□□□□□ -2.03
NUP88-209ENST00000574855 SND1-IT1Q9HBX3 110 aa2.37□□□□□ -2.03
NUP88-209ENST00000574855 ZNF581Q9P0T4 197 aa2.37□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 84.9 ms