RNA–Protein interactions for RNA: ENST00000570771.1

VPS53-209, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-209ENST00000570771 IGHV3-21A0A0B4J1V1 117 aa4.98□□□□□ -1.61
VPS53-209ENST00000570771 MFSD2BA6NFX1 497 aa4.98□□□□□ -1.61
VPS53-209ENST00000570771 TEX46H3BTG2 121 aa4.98□□□□□ -1.61
VPS53-209ENST00000570771 TSPAN15O95858 294 aa4.98□□□□□ -1.61
VPS53-209ENST00000570771 SPP1P10451 314 aa4.98□□□□□ -1.61
VPS53-209ENST00000570771 ATP6V0CP27449 155 aa4.98□□□□□ -1.61
VPS53-209ENST00000570771 RIPPLY3P57055 190 aa4.98□□□□□ -1.61
VPS53-209ENST00000570771 RAB14P61106 215 aa4.98□□□□□ -1.61
VPS53-209ENST00000570771 YPEL3P61236 119 aaPredicted RBP4.98□□□□□ -1.61
VPS53-209ENST00000570771 ZNF616Q08AN1 781 aa4.98□□□□□ -1.61
VPS53-209ENST00000570771 KIAA0141Q14154 515 aaPredicted RBP4.98□□□□□ -1.61
VPS53-209ENST00000570771 MLANAQ16655 118 aa4.98□□□□□ -1.61
VPS53-209ENST00000570771 ACOT6Q3I5F7 207 aaPredicted RBP4.98□□□□□ -1.61
VPS53-209ENST00000570771 ZNF343Q6P1L6 599 aa4.98□□□□□ -1.61
VPS53-209ENST00000570771 TEX261Q6UWH6 196 aa4.98□□□□□ -1.61
VPS53-209ENST00000570771 DPPA3Q6W0C5 159 aa4.98□□□□□ -1.61
VPS53-209ENST00000570771 CYP2G1PQ6ZSU1 146 aa4.98□□□□□ -1.61
VPS53-209ENST00000570771 OR1L4Q8NGR5 311 aa4.98□□□□□ -1.61
VPS53-209ENST00000570771 OR2G3Q8NGZ4 309 aa4.98□□□□□ -1.61
VPS53-209ENST00000570771 Q8WTZ3 238 aa4.98□□□□□ -1.61
VPS53-209ENST00000570771 RNF141Q8WVD5 230 aa4.98□□□□□ -1.61
VPS53-209ENST00000570771 UBE2E2Q96LR5 201 aa4.98□□□□□ -1.61
VPS53-209ENST00000570771 PFDN5Q99471 154 aa4.98□□□□□ -1.61
VPS53-209ENST00000570771 RNF2Q99496 336 aa4.98□□□□□ -1.61
VPS53-209ENST00000570771 GGTLC1Q9BX51 225 aa4.98□□□□□ -1.61
VPS53-209ENST00000570771 SLC25A32Q9H2D1 315 aa4.98□□□□□ -1.61
VPS53-209ENST00000570771 PXMP4Q9Y6I8 212 aa4.98□□□□□ -1.61
VPS53-209ENST00000570771 ELOA3CA0A087WX78 387 aaPredicted RBP4.97□□□□□ -1.61
VPS53-209ENST00000570771 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP4.97□□□□□ -1.61
VPS53-209ENST00000570771 OR2T8A6NH00 312 aa4.97□□□□□ -1.61
VPS53-209ENST00000570771 TGOLN2O43493 480 aa4.97□□□□□ -1.61
VPS53-209ENST00000570771 GGCTO75223 188 aaKnown RBP4.97□□□□□ -1.61
VPS53-209ENST00000570771 TOMM40O96008 361 aa4.97□□□□□ -1.61
VPS53-209ENST00000570771 IGHV3-48P01763 117 aa4.97□□□□□ -1.61
VPS53-209ENST00000570771 CLEC3BP05452 202 aa4.97□□□□□ -1.61
VPS53-209ENST00000570771 LGALS1P09382 135 aaKnown RBP4.97□□□□□ -1.61
VPS53-209ENST00000570771 H2AFB1P0C5Y9 115 aa4.97□□□□□ -1.61
VPS53-209ENST00000570771 IGLC1P0CG04 106 aa4.97□□□□□ -1.61
VPS53-209ENST00000570771 RD3LP0DJH9 198 aa4.97□□□□□ -1.61
VPS53-209ENST00000570771 M6PRP20645 277 aa4.97□□□□□ -1.61
VPS53-209ENST00000570771 GPR183P32249 361 aa4.97□□□□□ -1.61
VPS53-209ENST00000570771 ARL3P36405 182 aa4.97□□□□□ -1.61
VPS53-209ENST00000570771 CDX1P47902 265 aaPredicted RBP4.97□□□□□ -1.61
VPS53-209ENST00000570771 SULT1A2P50226 295 aa4.97□□□□□ -1.61
VPS53-209ENST00000570771 RAB2AP61019 212 aa4.97□□□□□ -1.61
VPS53-209ENST00000570771 B2MP61769 119 aa4.97□□□□□ -1.61
VPS53-209ENST00000570771 BLOC1S1P78537 153 aa4.97□□□□□ -1.61
VPS53-209ENST00000570771 RUNX1Q01196 453 aa4.97□□□□□ -1.61
VPS53-209ENST00000570771 TMEM41BQ5BJD5 291 aa4.97□□□□□ -1.61
VPS53-209ENST00000570771 KHDC1LQ5JSQ8 128 aa4.97□□□□□ -1.61
VPS53-209ENST00000570771 FFAR4Q5NUL3 377 aa4.97□□□□□ -1.61
VPS53-209ENST00000570771 CLEC19AQ6UXS0 136 aa4.97□□□□□ -1.61
VPS53-209ENST00000570771 ZNF600Q6ZNG1 722 aa4.97□□□□□ -1.61
VPS53-209ENST00000570771 STPG3Q8N7X2 389 aa4.97□□□□□ -1.61
VPS53-209ENST00000570771 ZNF491Q8N8L2 437 aa4.97□□□□□ -1.61
VPS53-209ENST00000570771 ZNF680Q8NEM1 530 aa4.97□□□□□ -1.61
VPS53-209ENST00000570771 OR51G1Q8NGK1 321 aa4.97□□□□□ -1.61
VPS53-209ENST00000570771 MYOZ3Q8TDC0 251 aa4.97□□□□□ -1.61
VPS53-209ENST00000570771 TMED6Q8WW62 240 aa4.97□□□□□ -1.61
VPS53-209ENST00000570771 MGST2Q99735 147 aa4.97□□□□□ -1.61
VPS53-209ENST00000570771 RSG1Q9BU20 258 aa4.97□□□□□ -1.61
VPS53-209ENST00000570771 GNB4Q9HAV0 340 aa4.97□□□□□ -1.61
VPS53-209ENST00000570771 SLC39A9Q9NUM3 307 aa4.97□□□□□ -1.61
VPS53-209ENST00000570771 PEF1Q9UBV8 284 aaKnown RBP4.97□□□□□ -1.61
VPS53-209ENST00000570771 SLC45A2Q9UMX9 530 aa4.97□□□□□ -1.61
VPS53-209ENST00000570771 IGKV1OR2-108A0A075B7D4 117 aa4.96□□□□□ -1.62
VPS53-209ENST00000570771 A0A1W2PPV4 95 aa4.96□□□□□ -1.62
VPS53-209ENST00000570771 NUDT19A8MXV4 375 aa4.96□□□□□ -1.62
VPS53-209ENST00000570771 BMPR1BO00238 502 aa4.96□□□□□ -1.62
VPS53-209ENST00000570771 COX7A2P2O60397 106 aa4.96□□□□□ -1.62
VPS53-209ENST00000570771 HYPMO75409 117 aa4.96□□□□□ -1.62
VPS53-209ENST00000570771 IGKV1-17P01599 117 aa4.96□□□□□ -1.62
VPS53-209ENST00000570771 IGHV3-11P01762 117 aa4.96□□□□□ -1.62
VPS53-209ENST00000570771 IGHV3-23P01764 117 aa4.96□□□□□ -1.62
VPS53-209ENST00000570771 HBE1P02100 147 aa4.96□□□□□ -1.62
VPS53-209ENST00000570771 RPLP1P05386 114 aaKnown RBP4.96□□□□□ -1.62
VPS53-209ENST00000570771 LINC00869P0C866 280 aa4.96□□□□□ -1.62
VPS53-209ENST00000570771 ZP3P21754 424 aa4.96□□□□□ -1.62
VPS53-209ENST00000570771 TAS2R45P59539 299 aa4.96□□□□□ -1.62
VPS53-209ENST00000570771 PLP1P60201 277 aa4.96□□□□□ -1.62
VPS53-209ENST00000570771 RHOBP62745 196 aa4.96□□□□□ -1.62
VPS53-209ENST00000570771 TIGITQ495A1 244 aa4.96□□□□□ -1.62
VPS53-209ENST00000570771 FAM106AQ4KMX7 169 aa4.96□□□□□ -1.62
VPS53-209ENST00000570771 MIC13Q5XKP0 118 aa4.96□□□□□ -1.62
VPS53-209ENST00000570771 ALKAL2Q6UX46 152 aa4.96□□□□□ -1.62
VPS53-209ENST00000570771 TMEM182Q6ZP80 229 aaPredicted RBP4.96□□□□□ -1.62
VPS53-209ENST00000570771 GATAD1Q8WUU5 269 aa4.96□□□□□ -1.62
VPS53-209ENST00000570771 C4orf3Q8WVX3 66 aa4.96□□□□□ -1.62
VPS53-209ENST00000570771 DPF1Q92782 380 aa4.96□□□□□ -1.62
VPS53-209ENST00000570771 SAT2Q96F10 170 aaPredicted RBP4.96□□□□□ -1.62
VPS53-209ENST00000570771 NARS2Q96I59 477 aaKnown RBP4.96□□□□□ -1.62
VPS53-209ENST00000570771 CCDC140Q96MF4 163 aa4.96□□□□□ -1.62
VPS53-209ENST00000570771 CITED2Q99967 270 aaPredicted RBP4.96□□□□□ -1.62
VPS53-209ENST00000570771 MRPL32Q9BYC8 188 aaKnown RBP4.96□□□□□ -1.62
VPS53-209ENST00000570771 ACTR3CQ9C0K3 210 aaPredicted RBP4.96□□□□□ -1.62
VPS53-209ENST00000570771 SH3BGRL3Q9H299 93 aa4.96□□□□□ -1.62
VPS53-209ENST00000570771 MRPL36Q9P0J6 103 aaKnown RBP4.96□□□□□ -1.62
VPS53-209ENST00000570771 TSSC4Q9Y5U2 329 aaPredicted RBP4.96□□□□□ -1.62
VPS53-209ENST00000570771 S4R3C0 116 aa4.96□□□□□ -1.62
VPS53-209ENST00000570771 MEGF8Q7Z7M0 2845 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms