RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 RPUSD4Q96CM3 377 aaKnown RBP6.28□□□□□ -1.4
VPS39-213ENST00000570062 USMG5Q96IX5 58 aa6.28□□□□□ -1.4
VPS39-213ENST00000570062 UHRF2Q96PU4 802 aa6.28□□□□□ -1.4
VPS39-213ENST00000570062 VSIRQ9H7M9 311 aa6.28□□□□□ -1.4
VPS39-213ENST00000570062 DOCK11Q5JSL3 2073 aa6.28□□□□□ -1.4
VPS39-213ENST00000570062 HRNRQ86YZ3 2850 aaPredicted RBP6.28□□□□□ -1.4
VPS39-213ENST00000570062 SPG11Q96JI7 2443 aa6.27□□□□□ -1.41
VPS39-213ENST00000570062 ARID1AO14497 2285 aa6.27□□□□□ -1.41
VPS39-213ENST00000570062 IGKV1OR2-108A0A075B7D4 117 aa6.27□□□□□ -1.41
VPS39-213ENST00000570062 IGHV3OR16-10A0A075B7F0 116 aa6.27□□□□□ -1.41
VPS39-213ENST00000570062 TRBV9A0A0B4J1U6 114 aa6.27□□□□□ -1.41
VPS39-213ENST00000570062 A0A1W2PRE2 83 aa6.27□□□□□ -1.41
VPS39-213ENST00000570062 K7EIM0 57 aa6.27□□□□□ -1.41
VPS39-213ENST00000570062 NUPL2O15504 423 aaKnown RBP6.27□□□□□ -1.41
VPS39-213ENST00000570062 NDUFB8O95169 186 aa6.27□□□□□ -1.41
VPS39-213ENST00000570062 TOMM40O96008 361 aa6.27□□□□□ -1.41
VPS39-213ENST00000570062 IGLC1P0CG04 106 aa6.27□□□□□ -1.41
VPS39-213ENST00000570062 EGR2P11161 476 aaPredicted RBP6.27□□□□□ -1.41
VPS39-213ENST00000570062 IER3P46695 156 aa6.27□□□□□ -1.41
VPS39-213ENST00000570062 MFAP2P55001 183 aa6.27□□□□□ -1.41
VPS39-213ENST00000570062 CCL20P78556 96 aa6.27□□□□□ -1.41
VPS39-213ENST00000570062 DEFA5Q01523 94 aa6.27□□□□□ -1.41
VPS39-213ENST00000570062 MLANAQ16655 118 aa6.27□□□□□ -1.41
VPS39-213ENST00000570062 SPNS3Q6ZMD2 512 aa6.27□□□□□ -1.41
VPS39-213ENST00000570062 LINC00052Q96N35 136 aa6.27□□□□□ -1.41
VPS39-213ENST00000570062 FANCD2OSQ96PS1 177 aa6.27□□□□□ -1.41
VPS39-213ENST00000570062 SCRT1Q9BWW7 348 aa6.27□□□□□ -1.41
VPS39-213ENST00000570062 PRSS22Q9GZN4 317 aa6.27□□□□□ -1.41
VPS39-213ENST00000570062 SLC25A22Q9H936 323 aa6.27□□□□□ -1.41
VPS39-213ENST00000570062 TMEM160Q9NX00 188 aa6.27□□□□□ -1.41
VPS39-213ENST00000570062 FBXL7Q9UJT9 491 aa6.27□□□□□ -1.41
VPS39-213ENST00000570062 IGKV1D-37A0A075B6S9 117 aa6.26□□□□□ -1.41
VPS39-213ENST00000570062 ATP6V0E1O15342 81 aa6.26□□□□□ -1.41
VPS39-213ENST00000570062 CD5LO43866 347 aa6.26□□□□□ -1.41
VPS39-213ENST00000570062 OR2C1O95371 312 aa6.26□□□□□ -1.41
VPS39-213ENST00000570062 GCHFRP30047 84 aa6.26□□□□□ -1.41
VPS39-213ENST00000570062 RPL15P61313 204 aaKnown RBP6.26□□□□□ -1.41
VPS39-213ENST00000570062 SLC35B1P78383 322 aa6.26□□□□□ -1.41
VPS39-213ENST00000570062 RELQ04864 619 aaPredicted RBP6.26□□□□□ -1.41
VPS39-213ENST00000570062 ATP5G2Q06055 141 aa6.26□□□□□ -1.41
VPS39-213ENST00000570062 ICAM4Q14773 271 aa6.26□□□□□ -1.41
VPS39-213ENST00000570062 RHEBQ15382 184 aa6.26□□□□□ -1.41
VPS39-213ENST00000570062 HAGHQ16775 308 aa6.26□□□□□ -1.41
VPS39-213ENST00000570062 DEFB112Q30KQ8 113 aa6.26□□□□□ -1.41
VPS39-213ENST00000570062 Q56UQ5 140 aa6.26□□□□□ -1.41
VPS39-213ENST00000570062 ASPHD1Q5U4P2 390 aa6.26□□□□□ -1.41
VPS39-213ENST00000570062 IQCF2Q8IXL9 164 aa6.26□□□□□ -1.41
VPS39-213ENST00000570062 OR5T1Q8NG75 326 aa6.26□□□□□ -1.41
VPS39-213ENST00000570062 RXFP4Q8TDU9 374 aa6.26□□□□□ -1.41
VPS39-213ENST00000570062 NIPSNAP3BQ9BS92 247 aa6.26□□□□□ -1.41
VPS39-213ENST00000570062 FAM103A1Q9BTL3 118 aaKnown RBP6.26□□□□□ -1.41
VPS39-213ENST00000570062 NPFFR1Q9GZQ6 430 aa6.26□□□□□ -1.41
VPS39-213ENST00000570062 ZNF355PQ9NSJ1 428 aa6.26□□□□□ -1.41
VPS39-213ENST00000570062 VPREB3Q9UKI3 123 aa6.26□□□□□ -1.41
VPS39-213ENST00000570062 HIGD1AQ9Y241 93 aa6.26□□□□□ -1.41
VPS39-213ENST00000570062 RFNGQ9Y644 331 aa6.26□□□□□ -1.41
VPS39-213ENST00000570062 AKAP9Q99996 3911 aa6.26□□□□□ -1.41
VPS39-213ENST00000570062 A0A1B0GV50 99 aa6.25□□□□□ -1.41
VPS39-213ENST00000570062 C11orf94C9JXX5 98 aa6.25□□□□□ -1.41
VPS39-213ENST00000570062 BMPR1BO00238 502 aa6.25□□□□□ -1.41
VPS39-213ENST00000570062 OR7C2O60412 319 aa6.25□□□□□ -1.41
VPS39-213ENST00000570062 S100A9P06702 114 aaKnown RBP6.25□□□□□ -1.41
VPS39-213ENST00000570062 SRP19P09132 144 aaKnown RBP6.25□□□□□ -1.41
VPS39-213ENST00000570062 ARL14EPLP0DKL9 152 aa6.25□□□□□ -1.41
VPS39-213ENST00000570062 ORM2P19652 201 aa6.25□□□□□ -1.41
VPS39-213ENST00000570062 SRP14P37108 136 aaKnown RBP6.25□□□□□ -1.41
VPS39-213ENST00000570062 MEOX2P50222 304 aa6.25□□□□□ -1.41
VPS39-213ENST00000570062 FGF8P55075 233 aaPredicted RBP6.25□□□□□ -1.41
VPS39-213ENST00000570062 ECSCRQ19T08 205 aa6.25□□□□□ -1.41
VPS39-213ENST00000570062 ZNF600Q6ZNG1 722 aa6.25□□□□□ -1.41
VPS39-213ENST00000570062 LINC00305Q7Z4B0 112 aa6.25□□□□□ -1.41
VPS39-213ENST00000570062 TMEM37Q8WXS4 190 aa6.25□□□□□ -1.41
VPS39-213ENST00000570062 HSPB9Q9BQS6 159 aa6.25□□□□□ -1.41
VPS39-213ENST00000570062 OR51M1Q9H341 326 aa6.25□□□□□ -1.41
VPS39-213ENST00000570062 SEPSECSQ9HD40 501 aaKnown RBP6.25□□□□□ -1.41
VPS39-213ENST00000570062 TMEM14CQ9P0S9 112 aa6.25□□□□□ -1.41
VPS39-213ENST00000570062 MTORP42345 2549 aa6.25□□□□□ -1.41
VPS39-213ENST00000570062 ABCA2Q9BZC7 2435 aa6.25□□□□□ -1.41
VPS39-213ENST00000570062 HIVEP1P15822 2718 aa6.24□□□□□ -1.41
VPS39-213ENST00000570062 WI2-2373I1.2A0A1W2PRP0 233 aa6.24□□□□□ -1.41
VPS39-213ENST00000570062 PSMB11A5LHX3 300 aa6.24□□□□□ -1.41
VPS39-213ENST00000570062 PAGE4O60829 102 aa6.24□□□□□ -1.41
VPS39-213ENST00000570062 OR2J3O76001 311 aa6.24□□□□□ -1.41
VPS39-213ENST00000570062 AMY1AP04745 511 aa6.24□□□□□ -1.41
VPS39-213ENST00000570062 APELAP0DMC3 54 aa6.24□□□□□ -1.41
VPS39-213ENST00000570062 PSG1P11464 419 aa6.24□□□□□ -1.41
VPS39-213ENST00000570062 PAX6P26367 422 aa6.24□□□□□ -1.41
VPS39-213ENST00000570062 RHOGP84095 191 aa6.24□□□□□ -1.41
VPS39-213ENST00000570062 SRSF3P84103 164 aaKnown RBP6.24□□□□□ -1.41
VPS39-213ENST00000570062 NDPQ00604 133 aa6.24□□□□□ -1.41
VPS39-213ENST00000570062 ZNF90Q03938 601 aa6.24□□□□□ -1.41
VPS39-213ENST00000570062 LY6EQ16553 131 aa6.24□□□□□ -1.41
VPS39-213ENST00000570062 C15orf32Q32M92 178 aa6.24□□□□□ -1.41
VPS39-213ENST00000570062 C19orf54Q5BKX5 351 aa6.24□□□□□ -1.41
VPS39-213ENST00000570062 C9orf152Q5JTZ5 239 aa6.24□□□□□ -1.41
VPS39-213ENST00000570062 CST9LP1Q5W188 147 aa6.24□□□□□ -1.41
VPS39-213ENST00000570062 TMEM219Q86XT9 240 aa6.24□□□□□ -1.41
VPS39-213ENST00000570062 BPIFA4PQ86YQ2 179 aa6.24□□□□□ -1.41
VPS39-213ENST00000570062 LYPD1Q8N2G4 141 aa6.24□□□□□ -1.41
VPS39-213ENST00000570062 ARL6IP6Q8N6S5 226 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms