RNA–Protein interactions for RNA: ENST00000568301.1

COMMD4-223, Transcript of COMM domain containing 4, human

TSL 5

Gene COMMD4, Length 666 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD4-223	ENST00000568301	MEF2D	Q14814	521 aa		10.8	□□□□□ -0.68
COMMD4-223	ENST00000568301	SURF2	Q15527	256 aa	Predicted RBP	10.8	□□□□□ -0.68
COMMD4-223	ENST00000568301	SIGLEC15	Q6ZMC9	328 aa		10.8	□□□□□ -0.68
COMMD4-223	ENST00000568301	ZNF705A	Q6ZN79	300 aa	Predicted RBP	10.8	□□□□□ -0.68
COMMD4-223	ENST00000568301	TMEM170A	Q8WVE7	144 aa		10.8	□□□□□ -0.68
COMMD4-223	ENST00000568301	NPIPB3	Q92617	1050 aa		10.8	□□□□□ -0.68
COMMD4-223	ENST00000568301	GPR146	Q96CH1	333 aa		10.8	□□□□□ -0.68
COMMD4-223	ENST00000568301	NEU1	Q99519	415 aa		10.8	□□□□□ -0.68
COMMD4-223	ENST00000568301	NAA60	Q9H7X0	242 aa		10.8	□□□□□ -0.68
COMMD4-223	ENST00000568301	SMIM9	A6NGZ8	99 aa		10.79	□□□□□ -0.68
COMMD4-223	ENST00000568301	CEBPZOS	A8MTT3	80 aa		10.79	□□□□□ -0.68
COMMD4-223	ENST00000568301	GABARAP	H6UMI1	98 aa		10.79	□□□□□ -0.68
COMMD4-223	ENST00000568301	RTL8C	O15255	209 aa		10.79	□□□□□ -0.68
COMMD4-223	ENST00000568301	NKX2-1	P43699	371 aa	Predicted RBP	10.79	□□□□□ -0.68
COMMD4-223	ENST00000568301	ZNF767P	Q75MW2	155 aa		10.79	□□□□□ -0.68
COMMD4-223	ENST00000568301	KRTAP4-5	Q9BYR2	181 aa		10.79	□□□□□ -0.68
COMMD4-223	ENST00000568301	RBM38	Q9H0Z9	239 aa	Known RBP	10.79	□□□□□ -0.68
COMMD4-223	ENST00000568301	TMEM56-RWDD3	S4R434	201 aa		10.79	□□□□□ -0.68
COMMD4-223	ENST00000568301	TMEM189	A5PLL7	270 aa		10.78	□□□□□ -0.68
COMMD4-223	ENST00000568301	ZNF705F	A8MVS1	300 aa	Predicted RBP	10.78	□□□□□ -0.68
COMMD4-223	ENST00000568301		H3BMQ9	156 aa		10.78	□□□□□ -0.68
COMMD4-223	ENST00000568301		M0R2N4	97 aa		10.78	□□□□□ -0.68
COMMD4-223	ENST00000568301	NXPH3	O95157	252 aa		10.78	□□□□□ -0.68
COMMD4-223	ENST00000568301	ZNF705D	P0CH99	300 aa	Predicted RBP	10.78	□□□□□ -0.68
COMMD4-223	ENST00000568301	ZNF705B	P0CI00	300 aa	Predicted RBP	10.78	□□□□□ -0.68
COMMD4-223	ENST00000568301	SPART-AS1	P0CW21	52 aa		10.78	□□□□□ -0.68
COMMD4-223	ENST00000568301	PSG1	P11464	419 aa		10.78	□□□□□ -0.68
COMMD4-223	ENST00000568301	HLA-DRB4	P13762	266 aa		10.78	□□□□□ -0.68
COMMD4-223	ENST00000568301	MRPS10	P82664	201 aa	Known RBP	10.78	□□□□□ -0.68
COMMD4-223	ENST00000568301	NMS	Q5H8A3	153 aa		10.78	□□□□□ -0.68
COMMD4-223	ENST00000568301	TMEM268	Q5VZI3	342 aa		10.78	□□□□□ -0.68
COMMD4-223	ENST00000568301	ACY3	Q96HD9	319 aa		10.78	□□□□□ -0.68
COMMD4-223	ENST00000568301	RSL24D1	Q9UHA3	163 aa	Known RBP	10.78	□□□□□ -0.68
COMMD4-223	ENST00000568301	PFDN2	Q9UHV9	154 aa		10.78	□□□□□ -0.68
COMMD4-223	ENST00000568301	GPR132	Q9UNW8	380 aa		10.78	□□□□□ -0.68
COMMD4-223	ENST00000568301		U3KQ87	197 aa		10.78	□□□□□ -0.68
COMMD4-223	ENST00000568301	HLA-DRB4	X5D2U9	266 aa		10.78	□□□□□ -0.68
COMMD4-223	ENST00000568301	CRYM-AS1	A6NIL9	109 aa		10.77	□□□□□ -0.69
COMMD4-223	ENST00000568301	DISC1	C4P0D8	188 aa		10.77	□□□□□ -0.69
COMMD4-223	ENST00000568301	NUP62	P37198	522 aa	Predicted RBP	10.77	□□□□□ -0.69
COMMD4-223	ENST00000568301	SPCS2	Q15005	226 aa		10.77	□□□□□ -0.69
COMMD4-223	ENST00000568301	OR51G1	Q8NGK1	321 aa		10.77	□□□□□ -0.69
COMMD4-223	ENST00000568301	DYNC2LI1	Q8TCX1	351 aa		10.77	□□□□□ -0.69
COMMD4-223	ENST00000568301	IL22RA2	Q969J5	263 aa		10.77	□□□□□ -0.69
COMMD4-223	ENST00000568301	FAM210B	Q96KR6	192 aa		10.77	□□□□□ -0.69
COMMD4-223	ENST00000568301	CLUHP3	Q96NS8	147 aa		10.77	□□□□□ -0.69
COMMD4-223	ENST00000568301	SULT1A3	P0DMM9	295 aa		10.76	□□□□□ -0.69
COMMD4-223	ENST00000568301	SULT1A4	P0DMN0	295 aa		10.76	□□□□□ -0.69
COMMD4-223	ENST00000568301	ATP5I	P56385	69 aa	Predicted RBP	10.76	□□□□□ -0.69
COMMD4-223	ENST00000568301	KLF9	Q13886	244 aa	Predicted RBP	10.76	□□□□□ -0.69
COMMD4-223	ENST00000568301	LGALS9B	Q3B8N2	356 aa		10.76	□□□□□ -0.69
COMMD4-223	ENST00000568301	FAAP20	Q6NZ36	180 aa		10.76	□□□□□ -0.69
COMMD4-223	ENST00000568301	RNF125	Q96EQ8	232 aa		10.76	□□□□□ -0.69
COMMD4-223	ENST00000568301	SCRT1	Q9BWW7	348 aa		10.76	□□□□□ -0.69
COMMD4-223	ENST00000568301	CCDC59	Q9P031	241 aa	Known RBP	10.76	□□□□□ -0.69
COMMD4-223	ENST00000568301	KCNIP3	Q9Y2W7	256 aa		10.76	□□□□□ -0.69
COMMD4-223	ENST00000568301	IFNA10	P01566	189 aa		10.75	□□□□□ -0.69
COMMD4-223	ENST00000568301	ID1	P41134	155 aa		10.75	□□□□□ -0.69
COMMD4-223	ENST00000568301	C1orf194	Q5T5A4	169 aa		10.75	□□□□□ -0.69
COMMD4-223	ENST00000568301	SPATA31B1P	Q5VZV4	182 aa		10.75	□□□□□ -0.69
COMMD4-223	ENST00000568301	OR8G2P	Q6IF36	304 aa		10.75	□□□□□ -0.69
COMMD4-223	ENST00000568301	PRRT1	Q99946	306 aa		10.75	□□□□□ -0.69
COMMD4-223	ENST00000568301	MIXL1	Q9H2W2	232 aa		10.75	□□□□□ -0.69
COMMD4-223	ENST00000568301	SAV1	Q9H4B6	383 aa	Predicted RBP	10.75	□□□□□ -0.69
COMMD4-223	ENST00000568301	BATF3	Q9NR55	127 aa		10.75	□□□□□ -0.69
COMMD4-223	ENST00000568301	TEX48	A0A1B0GUV7	120 aa		10.74	□□□□□ -0.69
COMMD4-223	ENST00000568301	CCDC160	A6NGH7	325 aa		10.74	□□□□□ -0.69
COMMD4-223	ENST00000568301	AKAIN1	P0CW23	69 aa		10.74	□□□□□ -0.69
COMMD4-223	ENST00000568301	GPX4	P36969	197 aa	Predicted RBP	10.74	□□□□□ -0.69
COMMD4-223	ENST00000568301	GDF5OS	Q5U4N7	250 aa		10.74	□□□□□ -0.69
COMMD4-223	ENST00000568301	FOXI2	Q6ZQN5	318 aa		10.74	□□□□□ -0.69
COMMD4-223	ENST00000568301	SMIM4	Q8WVI0	70 aa		10.74	□□□□□ -0.69
COMMD4-223	ENST00000568301	HSPB7	Q9UBY9	170 aa		10.74	□□□□□ -0.69
COMMD4-223	ENST00000568301	RFNG	Q9Y644	331 aa		10.74	□□□□□ -0.69
COMMD4-223	ENST00000568301		A0A0B4J2A0	478 aa		10.73	□□□□□ -0.69
COMMD4-223	ENST00000568301		A6NHS1	94 aa		10.73	□□□□□ -0.69
COMMD4-223	ENST00000568301	RGS5	O15539	181 aa		10.73	□□□□□ -0.69
COMMD4-223	ENST00000568301	IFNA21	P01568	189 aa		10.73	□□□□□ -0.69
COMMD4-223	ENST00000568301	PSMB3	P49720	205 aa		10.73	□□□□□ -0.69
COMMD4-223	ENST00000568301	CCR6	P51684	374 aa		10.73	□□□□□ -0.69
COMMD4-223	ENST00000568301	EMP1	P54849	157 aa		10.73	□□□□□ -0.69
COMMD4-223	ENST00000568301	LGI3	Q8N145	548 aa		10.73	□□□□□ -0.69
COMMD4-223	ENST00000568301	OR4C16	Q8NGL9	310 aa		10.73	□□□□□ -0.69
COMMD4-223	ENST00000568301	DTD1	Q8TEA8	209 aa		10.73	□□□□□ -0.69
COMMD4-223	ENST00000568301	LINC00052	Q96N35	136 aa		10.73	□□□□□ -0.69
COMMD4-223	ENST00000568301	SCGB3A2	Q96PL1	93 aa		10.73	□□□□□ -0.69
COMMD4-223	ENST00000568301	PBDC1	Q9BVG4	233 aa		10.73	□□□□□ -0.69
COMMD4-223	ENST00000568301	WDR12	Q9GZL7	423 aa	Known RBP	10.73	□□□□□ -0.69
COMMD4-223	ENST00000568301	RABL2A	Q9UBK7	228 aa	Predicted RBP	10.73	□□□□□ -0.69
COMMD4-223	ENST00000568301	DKK2	Q9UBU2	259 aa		10.73	□□□□□ -0.69
COMMD4-223	ENST00000568301	SHPK	Q9UHJ6	478 aa		10.73	□□□□□ -0.69
COMMD4-223	ENST00000568301	RABL2B	Q9UNT1	228 aa		10.73	□□□□□ -0.69
COMMD4-223	ENST00000568301	ZFP92	A6NM28	416 aa		10.72	□□□□□ -0.69
COMMD4-223	ENST00000568301	SNRPGP15	A8MWD9	76 aa		10.72	□□□□□ -0.69
COMMD4-223	ENST00000568301	CTDSP2	O14595	271 aa		10.72	□□□□□ -0.69
COMMD4-223	ENST00000568301	CTDSPL	O15194	276 aa		10.72	□□□□□ -0.69
COMMD4-223	ENST00000568301	IGKV3-20	P01619	116 aa		10.72	□□□□□ -0.69
COMMD4-223	ENST00000568301	FABP1	P07148	127 aa		10.72	□□□□□ -0.69
COMMD4-223	ENST00000568301	SUPT4H1	P63272	117 aa	Known RBP	10.72	□□□□□ -0.69
COMMD4-223	ENST00000568301	GAMT	Q14353	236 aa		10.72	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms