RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 PRR20DP86480 221 aa11.64□□□□□ -0.55
CLN3-229ENST00000567963 PRR20BP86481 221 aa11.64□□□□□ -0.55
CLN3-229ENST00000567963 PRR20AP86496 221 aa11.64□□□□□ -0.55
CLN3-229ENST00000567963 SCGB3A2Q96PL1 93 aa11.64□□□□□ -0.55
CLN3-229ENST00000567963 HSPB7Q9UBY9 170 aa11.64□□□□□ -0.55
CLN3-229ENST00000567963 APLNQ9ULZ1 77 aa11.64□□□□□ -0.55
CLN3-229ENST00000567963 DNAH10Q8IVF4 4471 aa11.64□□□□□ -0.55
CLN3-229ENST00000567963 ELOA3CA0A087WX78 387 aaPredicted RBP11.63□□□□□ -0.55
CLN3-229ENST00000567963 A0A0B4J2A0 478 aa11.63□□□□□ -0.55
CLN3-229ENST00000567963 PSG1P11464 419 aa11.63□□□□□ -0.55
CLN3-229ENST00000567963 AKR1C4P17516 323 aa11.63□□□□□ -0.55
CLN3-229ENST00000567963 CCR6P51684 374 aa11.63□□□□□ -0.55
CLN3-229ENST00000567963 SNRPD3P62318 126 aaKnown RBP11.63□□□□□ -0.55
CLN3-229ENST00000567963 SUPT4H1P63272 117 aaKnown RBP11.63□□□□□ -0.55
CLN3-229ENST00000567963 SIGLEC15Q6ZMC9 328 aa11.63□□□□□ -0.55
CLN3-229ENST00000567963 LYZL2Q7Z4W2 148 aa11.63□□□□□ -0.55
CLN3-229ENST00000567963 DTD1Q8TEA8 209 aa11.63□□□□□ -0.55
CLN3-229ENST00000567963 SEPSECSQ9HD40 501 aaKnown RBP11.63□□□□□ -0.55
CLN3-229ENST00000567963 NRN1Q9NPD7 142 aa11.63□□□□□ -0.55
CLN3-229ENST00000567963 SHPKQ9UHJ6 478 aa11.63□□□□□ -0.55
CLN3-229ENST00000567963 TBC1D24Q9ULP9 559 aa11.63□□□□□ -0.55
CLN3-229ENST00000567963 FAM90A26D6RGX4 464 aa11.63□□□□□ -0.55
CLN3-229ENST00000567963 HLA-DMBP28068 263 aa11.63□□□□□ -0.55
CLN3-229ENST00000567963 SMCO1Q147U7 214 aa11.63□□□□□ -0.55
CLN3-229ENST00000567963 LGI3Q8N145 548 aa11.63□□□□□ -0.55
CLN3-229ENST00000567963 MCFD2Q8NI22 146 aa11.63□□□□□ -0.55
CLN3-229ENST00000567963 SOSTQ9BQB4 213 aa11.63□□□□□ -0.55
CLN3-229ENST00000567963 RBKSQ9H477 322 aa11.63□□□□□ -0.55
CLN3-229ENST00000567963 MCUBQ9NWR8 336 aa11.63□□□□□ -0.55
CLN3-229ENST00000567963 NUTF2P61970 127 aaKnown RBP11.62□□□□□ -0.55
CLN3-229ENST00000567963 KLF9Q13886 244 aaPredicted RBP11.62□□□□□ -0.55
CLN3-229ENST00000567963 LINC00299Q6ZSB3 139 aa11.62□□□□□ -0.55
CLN3-229ENST00000567963 OR51G1Q8NGK1 321 aa11.62□□□□□ -0.55
CLN3-229ENST00000567963 H3BMM0 161 aa11.61□□□□□ -0.55
CLN3-229ENST00000567963 TNFSF8P32971 234 aa11.61□□□□□ -0.55
CLN3-229ENST00000567963 ATP5IP56385 69 aaPredicted RBP11.61□□□□□ -0.55
CLN3-229ENST00000567963 Q6ZTC4 211 aa11.61□□□□□ -0.55
CLN3-229ENST00000567963 RNF125Q96EQ8 232 aa11.61□□□□□ -0.55
CLN3-229ENST00000567963 C1QTNF4Q9BXJ3 329 aa11.61□□□□□ -0.55
CLN3-229ENST00000567963 TRAV10A0A0B4J240 114 aa11.6□□□□□ -0.55
CLN3-229ENST00000567963 FABP12A6NFH5 140 aa11.6□□□□□ -0.55
CLN3-229ENST00000567963 ANXA3P12429 323 aa11.6□□□□□ -0.55
CLN3-229ENST00000567963 GPX4P36969 197 aaPredicted RBP11.6□□□□□ -0.55
CLN3-229ENST00000567963 GAMTQ14353 236 aa11.6□□□□□ -0.55
CLN3-229ENST00000567963 CENPSQ8N2Z9 138 aa11.6□□□□□ -0.55
CLN3-229ENST00000567963 IGKV1D-37A0A075B6S9 117 aa11.59□□□□□ -0.55
CLN3-229ENST00000567963 SRPXP78539 464 aa11.59□□□□□ -0.55
CLN3-229ENST00000567963 ZNF90Q03938 601 aa11.59□□□□□ -0.55
CLN3-229ENST00000567963 OR1S1Q8NH92 325 aa11.59□□□□□ -0.55
CLN3-229ENST00000567963 PBDC1Q9BVG4 233 aa11.59□□□□□ -0.55
CLN3-229ENST00000567963 XCL2Q9UBD3 114 aa11.59□□□□□ -0.55
CLN3-229ENST00000567963 DNAH6Q9C0G6 4158 aa11.59□□□□□ -0.55
CLN3-229ENST00000567963 ZFP92A6NM28 416 aa11.58□□□□□ -0.56
CLN3-229ENST00000567963 HLA-DRB4P13762 266 aa11.58□□□□□ -0.56
CLN3-229ENST00000567963 NUP62P37198 522 aaPredicted RBP11.58□□□□□ -0.56
CLN3-229ENST00000567963 NKX2-1P43699 371 aaPredicted RBP11.58□□□□□ -0.56
CLN3-229ENST00000567963 OR8G2PQ6IF36 304 aa11.58□□□□□ -0.56
CLN3-229ENST00000567963 PFDN2Q9UHV9 154 aa11.58□□□□□ -0.56
CLN3-229ENST00000567963 CELA1Q9UNI1 258 aa11.58□□□□□ -0.56
CLN3-229ENST00000567963 HLA-DRB4X5D2U9 266 aa11.58□□□□□ -0.56
CLN3-229ENST00000567963 IGHV4-4A0A075B6R2 117 aa11.57□□□□□ -0.56
CLN3-229ENST00000567963 PIGBOS1A0A0B4J2F0 54 aa11.57□□□□□ -0.56
CLN3-229ENST00000567963 PITX3O75364 302 aa11.57□□□□□ -0.56
CLN3-229ENST00000567963 C12orf74Q32Q52 190 aa11.57□□□□□ -0.56
CLN3-229ENST00000567963 HECTD4Q9Y4D8 3996 aa11.57□□□□□ -0.56
CLN3-229ENST00000567963 DUXBA0A1W2PPF3 345 aa11.57□□□□□ -0.56
CLN3-229ENST00000567963 SNRPGP15A8MWD9 76 aa11.57□□□□□ -0.56
CLN3-229ENST00000567963 TMEM128Q5BJH2 165 aa11.57□□□□□ -0.56
CLN3-229ENST00000567963 GDF5OSQ5U4N7 250 aa11.57□□□□□ -0.56
CLN3-229ENST00000567963 CCDC190Q86UF4 302 aa11.57□□□□□ -0.56
CLN3-229ENST00000567963 SLC35E1Q96K37 410 aa11.57□□□□□ -0.56
CLN3-229ENST00000567963 RNF126Q9BV68 326 aa11.57□□□□□ -0.56
CLN3-229ENST00000567963 WDR12Q9GZL7 423 aaKnown RBP11.57□□□□□ -0.56
CLN3-229ENST00000567963 S100A5P33763 92 aa11.56□□□□□ -0.56
CLN3-229ENST00000567963 FAUP35544 74 aaKnown RBP11.56□□□□□ -0.56
CLN3-229ENST00000567963 C1orf194Q5T5A4 169 aa11.56□□□□□ -0.56
CLN3-229ENST00000567963 ZNF705AQ6ZN79 300 aaPredicted RBP11.56□□□□□ -0.56
CLN3-229ENST00000567963 ZNF767PQ75MW2 155 aa11.56□□□□□ -0.56
CLN3-229ENST00000567963 TMED4Q7Z7H5 227 aa11.56□□□□□ -0.56
CLN3-229ENST00000567963 DEFB131BA0A096LNP1 70 aa11.55□□□□□ -0.56
CLN3-229ENST00000567963 FABP1P07148 127 aa11.55□□□□□ -0.56
CLN3-229ENST00000567963 ID1P41134 155 aa11.55□□□□□ -0.56
CLN3-229ENST00000567963 DEFB1P60022 68 aa11.55□□□□□ -0.56
CLN3-229ENST00000567963 LYZP61626 148 aa11.55□□□□□ -0.56
CLN3-229ENST00000567963 RAB11AP62491 216 aa11.55□□□□□ -0.56
CLN3-229ENST00000567963 TOMM5Q8N4H5 51 aa11.55□□□□□ -0.56
CLN3-229ENST00000567963 LRTM2Q8N967 370 aa11.55□□□□□ -0.56
CLN3-229ENST00000567963 TRIM63Q969Q1 353 aa11.55□□□□□ -0.56
CLN3-229ENST00000567963 LINC00052Q96N35 136 aa11.55□□□□□ -0.56
CLN3-229ENST00000567963 NEU1Q99519 415 aa11.55□□□□□ -0.56
CLN3-229ENST00000567963 TRGV9Q99603 122 aa11.55□□□□□ -0.56
CLN3-229ENST00000567963 SAV1Q9H4B6 383 aaPredicted RBP11.55□□□□□ -0.56
CLN3-229ENST00000567963 V9GYH0 126 aa11.55□□□□□ -0.56
CLN3-229ENST00000567963 IGKV1OR2-108A0A075B7D4 117 aa11.54□□□□□ -0.56
CLN3-229ENST00000567963 ZNF705FA8MVS1 300 aaPredicted RBP11.54□□□□□ -0.56
CLN3-229ENST00000567963 SOCS3O14543 225 aa11.54□□□□□ -0.56
CLN3-229ENST00000567963 ZNF705DP0CH99 300 aaPredicted RBP11.54□□□□□ -0.56
CLN3-229ENST00000567963 ZNF705BP0CI00 300 aaPredicted RBP11.54□□□□□ -0.56
CLN3-229ENST00000567963 SLC25A6P12236 298 aa11.54□□□□□ -0.56
CLN3-229ENST00000567963 PSMB3P49720 205 aa11.54□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms