RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 OR10P1Q8NGE3 313 aa14.69□□□□□ -0.06
CLN3-225ENST00000566824 OR2K2Q8NGT1 345 aa14.69□□□□□ -0.06
CLN3-225ENST00000566824 TRGV9Q99603 122 aa14.69□□□□□ -0.06
CLN3-225ENST00000566824 MED28Q9H204 178 aa14.69□□□□□ -0.06
CLN3-225ENST00000566824 ZMAT5Q9UDW3 170 aaKnown RBP14.69□□□□□ -0.06
CLN3-225ENST00000566824 LSM4Q9Y4Z0 139 aaKnown RBP14.69□□□□□ -0.06
CLN3-225ENST00000566824 PVALBP20472 110 aaPredicted RBP14.68□□□□□ -0.06
CLN3-225ENST00000566824 CYCSP99999 105 aaKnown RBP14.68□□□□□ -0.06
CLN3-225ENST00000566824 AKR1C1Q04828 323 aa14.68□□□□□ -0.06
CLN3-225ENST00000566824 GUCA2BQ16661 112 aa14.68□□□□□ -0.06
CLN3-225ENST00000566824 OR51G1Q8NGK1 321 aa14.68□□□□□ -0.06
CLN3-225ENST00000566824 GINS3Q9BRX5 216 aa14.68□□□□□ -0.06
CLN3-225ENST00000566824 SCGB2A1O75556 95 aa14.67□□□□□ -0.06
CLN3-225ENST00000566824 MPC2O95563 127 aa14.67□□□□□ -0.06
CLN3-225ENST00000566824 CRYBB3P26998 211 aa14.67□□□□□ -0.06
CLN3-225ENST00000566824 SLC38A11Q08AI6 406 aa14.67□□□□□ -0.06
CLN3-225ENST00000566824 DEFB121Q5J5C9 76 aa14.67□□□□□ -0.06
CLN3-225ENST00000566824 TMEM144Q7Z5S9 345 aa14.67□□□□□ -0.06
CLN3-225ENST00000566824 TMEM217Q8N7C4 229 aa14.67□□□□□ -0.06
CLN3-225ENST00000566824 STPG3Q8N7X2 389 aa14.67□□□□□ -0.06
CLN3-225ENST00000566824 VSIRQ9H7M9 311 aa14.67□□□□□ -0.06
CLN3-225ENST00000566824 U3KQE9 123 aa14.67□□□□□ -0.06
CLN3-225ENST00000566824 CD7P09564 240 aa14.66□□□□□ -0.06
CLN3-225ENST00000566824 NPPCP23582 126 aa14.66□□□□□ -0.06
CLN3-225ENST00000566824 NHLH2Q02577 135 aa14.66□□□□□ -0.06
CLN3-225ENST00000566824 E5RGE8 158 aa14.66□□□□□ -0.06
CLN3-225ENST00000566824 SULT1A1P50225 295 aa14.66□□□□□ -0.06
CLN3-225ENST00000566824 FAM90A2PQ658T7 463 aa14.66□□□□□ -0.06
CLN3-225ENST00000566824 RNF125Q96EQ8 232 aa14.66□□□□□ -0.06
CLN3-225ENST00000566824 METTL26Q96S19 204 aa14.66□□□□□ -0.06
CLN3-225ENST00000566824 PBDC1Q9BVG4 233 aa14.66□□□□□ -0.06
CLN3-225ENST00000566824 IGKV3-7A0A075B6H7 116 aa14.65□□□□□ -0.06
CLN3-225ENST00000566824 DFFBO76075 338 aa14.65□□□□□ -0.06
CLN3-225ENST00000566824 RLN2P04090 185 aa14.65□□□□□ -0.06
CLN3-225ENST00000566824 LYZP61626 148 aa14.65□□□□□ -0.06
CLN3-225ENST00000566824 Q5BKY6 102 aa14.65□□□□□ -0.06
CLN3-225ENST00000566824 WFDC10AQ9H1F0 79 aa14.65□□□□□ -0.06
CLN3-225ENST00000566824 NPVFQ9HCQ7 196 aa14.65□□□□□ -0.06
CLN3-225ENST00000566824 MBD2Q9UBB5 411 aa14.65□□□□□ -0.06
CLN3-225ENST00000566824 TRAV25A0A0B4J276 109 aa14.64□□□□□ -0.07
CLN3-225ENST00000566824 FNDC10F2Z333 226 aa14.64□□□□□ -0.07
CLN3-225ENST00000566824 HNRNPCP07910 306 aaKnown RBP eCLIP14.64□□□□□ -0.07
CLN3-225ENST00000566824 P2RY1P47900 373 aa14.64□□□□□ -0.07
CLN3-225ENST00000566824 EWSR1Q01844 656 aaKnown RBP eCLIP14.64□□□□□ -0.07
CLN3-225ENST00000566824 RBPMS2Q6ZRY4 209 aaKnown RBP14.64□□□□□ -0.07
CLN3-225ENST00000566824 CYP2G1PQ6ZSU1 146 aa14.64□□□□□ -0.07
CLN3-225ENST00000566824 TCF24Q7RTU0 167 aa14.64□□□□□ -0.07
CLN3-225ENST00000566824 GGACTQ9BVM4 153 aa14.64□□□□□ -0.07
CLN3-225ENST00000566824 DNAH9Q9NYC9 4486 aa14.63□□□□□ -0.07
CLN3-225ENST00000566824 TSPAN4O14817 238 aa14.63□□□□□ -0.07
CLN3-225ENST00000566824 CD81P60033 236 aa14.63□□□□□ -0.07
CLN3-225ENST00000566824 GBGT1Q8N5D6 347 aa14.63□□□□□ -0.07
CLN3-225ENST00000566824 TFPI2P48307 235 aa14.62□□□□□ -0.07
CLN3-225ENST00000566824 VWC2Q2TAL6 325 aa14.62□□□□□ -0.07
CLN3-225ENST00000566824 STX12Q86Y82 276 aa14.62□□□□□ -0.07
CLN3-225ENST00000566824 CHAC2Q8WUX2 184 aa14.62□□□□□ -0.07
CLN3-225ENST00000566824 MGST2Q99735 147 aa14.62□□□□□ -0.07
CLN3-225ENST00000566824 NEURL2Q9BR09 285 aa14.62□□□□□ -0.07
CLN3-225ENST00000566824 C19orf73Q9NVV2 129 aa14.62□□□□□ -0.07
CLN3-225ENST00000566824 RABAC1Q9UI14 185 aa14.62□□□□□ -0.07
CLN3-225ENST00000566824 FABP1P07148 127 aa14.61□□□□□ -0.07
CLN3-225ENST00000566824 LYL1P12980 280 aa14.61□□□□□ -0.07
CLN3-225ENST00000566824 LAMTOR1Q6IAA8 161 aa14.61□□□□□ -0.07
CLN3-225ENST00000566824 TEPPQ6URK8 271 aa14.61□□□□□ -0.07
CLN3-225ENST00000566824 C16orf54Q6UWD8 224 aa14.61□□□□□ -0.07
CLN3-225ENST00000566824 GLMPQ8WWB7 406 aa14.61□□□□□ -0.07
CLN3-225ENST00000566824 UQCC1Q9NVA1 299 aa14.61□□□□□ -0.07
CLN3-225ENST00000566824 COL7A1Q02388 2944 aa14.61□□□□□ -0.07
CLN3-225ENST00000566824 UBE2L5PA0A1B0GUS4 154 aa14.6□□□□□ -0.07
CLN3-225ENST00000566824 AGPAT2O15120 278 aa14.6□□□□□ -0.07
CLN3-225ENST00000566824 BUB3O43684 328 aa14.6□□□□□ -0.07
CLN3-225ENST00000566824 S100A11P31949 105 aa14.6□□□□□ -0.07
CLN3-225ENST00000566824 EIF2B2P49770 351 aaKnown RBP14.6□□□□□ -0.07
CLN3-225ENST00000566824 DEFB125Q8N687 156 aa14.6□□□□□ -0.07
CLN3-225ENST00000566824 BPIFCQ8NFQ6 507 aa14.6□□□□□ -0.07
CLN3-225ENST00000566824 OR5C1Q8NGR4 320 aa14.6□□□□□ -0.07
CLN3-225ENST00000566824 SPAG8Q99932 426 aaPredicted RBP14.6□□□□□ -0.07
CLN3-225ENST00000566824 TMEM147Q9BVK8 224 aa14.6□□□□□ -0.07
CLN3-225ENST00000566824 SLC25A31Q9H0C2 315 aa14.6□□□□□ -0.07
CLN3-225ENST00000566824 DOK5Q9P104 306 aa14.6□□□□□ -0.07
CLN3-225ENST00000566824 SLC45A2Q9UMX9 530 aa14.6□□□□□ -0.07
CLN3-225ENST00000566824 WDR83OSQ9Y284 106 aa14.6□□□□□ -0.07
CLN3-225ENST00000566824 SMAD5-AS1Q9Y6J3 95 aa14.6□□□□□ -0.07
CLN3-225ENST00000566824 GIPP09681 153 aaPredicted RBP14.59□□□□□ -0.07
CLN3-225ENST00000566824 IGHV4-30-4P0DP06 118 aa14.59□□□□□ -0.07
CLN3-225ENST00000566824 ORM2P19652 201 aa14.59□□□□□ -0.07
CLN3-225ENST00000566824 GTSCR1Q86UQ5 136 aa14.59□□□□□ -0.07
CLN3-225ENST00000566824 WFDC3Q8IUB2 231 aa14.59□□□□□ -0.07
CLN3-225ENST00000566824 MS4A6AQ9H2W1 248 aa14.59□□□□□ -0.07
CLN3-225ENST00000566824 UBQLN2Q9UHD9 624 aa14.59□□□□□ -0.07
CLN3-225ENST00000566824 A0A1W2PS18 150 aa14.58□□□□□ -0.08
CLN3-225ENST00000566824 G3V3Q6 166 aa14.58□□□□□ -0.08
CLN3-225ENST00000566824 LINC00869P0C866 280 aa14.58□□□□□ -0.08
CLN3-225ENST00000566824 RPL12P30050 165 aaKnown RBP14.58□□□□□ -0.08
CLN3-225ENST00000566824 HBG1P69891 147 aa14.58□□□□□ -0.08
CLN3-225ENST00000566824 HBG2P69892 147 aa14.58□□□□□ -0.08
CLN3-225ENST00000566824 CLINT1Q14677 625 aa14.58□□□□□ -0.08
CLN3-225ENST00000566824 ODF3L2Q3SX64 289 aa14.58□□□□□ -0.08
CLN3-225ENST00000566824 PATE2Q6UY27 113 aa14.58□□□□□ -0.08
CLN3-225ENST00000566824 FAM24BQ8N5W8 94 aa14.58□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 93.3 ms