RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 SRSF2Q01130 221 aaKnown RBP23.67■■□□□ 1.38
CTCF-203ENST00000566078 CTXND1A0A1B0GTU2 59 aa23.66■■□□□ 1.38
CTCF-203ENST00000566078 A0A1B0GV50 99 aa23.66■■□□□ 1.38
CTCF-203ENST00000566078 SEC14L6B5MCN3 397 aa23.66■■□□□ 1.38
CTCF-203ENST00000566078 TEX46H3BTG2 121 aa23.66■■□□□ 1.38
CTCF-203ENST00000566078 COX7A2P2O60397 106 aa23.66■■□□□ 1.38
CTCF-203ENST00000566078 COMMD1Q8N668 190 aa23.66■■□□□ 1.38
CTCF-203ENST00000566078 A0A1W2PPV4 95 aa23.66■■□□□ 1.38
CTCF-203ENST00000566078 PPP5D1E7EU14 171 aa23.66■■□□□ 1.38
CTCF-203ENST00000566078 NDUFA7O95182 113 aa23.66■■□□□ 1.38
CTCF-203ENST00000566078 LYZP61626 148 aa23.66■■□□□ 1.38
CTCF-203ENST00000566078 KIAA0141Q14154 515 aaPredicted RBP23.66■■□□□ 1.38
CTCF-203ENST00000566078 RNF152Q8N8N0 203 aa23.66■■□□□ 1.38
CTCF-203ENST00000566078 OR4X2Q8NGF9 303 aa23.66■■□□□ 1.38
CTCF-203ENST00000566078 OR51G1Q8NGK1 321 aa23.66■■□□□ 1.38
CTCF-203ENST00000566078 OR1L4Q8NGR5 311 aa23.66■■□□□ 1.38
CTCF-203ENST00000566078 OR1B1Q8NGR6 318 aa23.66■■□□□ 1.38
CTCF-203ENST00000566078 SFT2D1Q8WV19 159 aa23.66■■□□□ 1.38
CTCF-203ENST00000566078 PFDN5Q99471 154 aa23.66■■□□□ 1.38
CTCF-203ENST00000566078 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP23.65■■□□□ 1.38
CTCF-203ENST00000566078 ORM2P19652 201 aa23.65■■□□□ 1.38
CTCF-203ENST00000566078 RHOBP62745 196 aa23.65■■□□□ 1.38
CTCF-203ENST00000566078 ZNF343Q6P1L6 599 aa23.65■■□□□ 1.38
CTCF-203ENST00000566078 LCN15Q6UWW0 184 aa23.65■■□□□ 1.38
CTCF-203ENST00000566078 LINC01006Q8NI28 216 aa23.65■■□□□ 1.38
CTCF-203ENST00000566078 MYOZ3Q8TDC0 251 aa23.65■■□□□ 1.38
CTCF-203ENST00000566078 TMEM37Q8WXS4 190 aa23.65■■□□□ 1.38
CTCF-203ENST00000566078 MAP1LC3B2A6NCE7 125 aa23.64■■□□□ 1.38
CTCF-203ENST00000566078 LINC00862A6NCI5 91 aa23.64■■□□□ 1.38
CTCF-203ENST00000566078 HMGB3O15347 200 aaKnown RBP23.64■■□□□ 1.38
CTCF-203ENST00000566078 ARL3P36405 182 aa23.64■■□□□ 1.38
CTCF-203ENST00000566078 FAM78BQ5VT40 261 aa23.64■■□□□ 1.38
CTCF-203ENST00000566078 SPATA31B1PQ5VZV4 182 aa23.64■■□□□ 1.38
CTCF-203ENST00000566078 SPSB3Q6PJ21 355 aa23.64■■□□□ 1.38
CTCF-203ENST00000566078 ZNF491Q8N8L2 437 aa23.64■■□□□ 1.38
CTCF-203ENST00000566078 OR5AU1Q8NGC0 362 aa23.64■■□□□ 1.38
CTCF-203ENST00000566078 Q8WTZ3 238 aa23.64■■□□□ 1.38
CTCF-203ENST00000566078 RAB24Q969Q5 203 aa23.64■■□□□ 1.38
CTCF-203ENST00000566078 MAP1LC3BQ9GZQ8 125 aa23.64■■□□□ 1.38
CTCF-203ENST00000566078 SEPSECSQ9HD40 501 aaKnown RBP23.64■■□□□ 1.38
CTCF-203ENST00000566078 DNAJC4Q9NNZ3 241 aa23.64■■□□□ 1.38
CTCF-203ENST00000566078 ANKRD34BA5PLL1 514 aa23.63■■□□□ 1.37
CTCF-203ENST00000566078 TRBV12-3P01733 135 aa23.63■■□□□ 1.37
CTCF-203ENST00000566078 OR5G3P0C626 314 aa23.63■■□□□ 1.37
CTCF-203ENST00000566078 PLP1P60201 277 aa23.63■■□□□ 1.37
CTCF-203ENST00000566078 C10orf113Q5VZT2 155 aa23.63■■□□□ 1.37
CTCF-203ENST00000566078 PATE2Q6UY27 113 aa23.63■■□□□ 1.37
CTCF-203ENST00000566078 GATAD1Q8WUU5 269 aa23.63■■□□□ 1.37
CTCF-203ENST00000566078 MBD3L1Q8WWY6 194 aa23.63■■□□□ 1.37
CTCF-203ENST00000566078 PBDC1Q9BVG4 233 aa23.63■■□□□ 1.37
CTCF-203ENST00000566078 C19orf24Q9BVV8 132 aa23.63■■□□□ 1.37
CTCF-203ENST00000566078 PFDN2Q9UHV9 154 aa23.63■■□□□ 1.37
CTCF-203ENST00000566078 MAST4O15021 2626 aa23.63■■□□□ 1.37
CTCF-203ENST00000566078 IL4P05112 153 aa23.62■■□□□ 1.37
CTCF-203ENST00000566078 FGF8P55075 233 aaPredicted RBP23.62■■□□□ 1.37
CTCF-203ENST00000566078 NDUFA5Q16718 116 aa23.62■■□□□ 1.37
CTCF-203ENST00000566078 ZNF600Q6ZNG1 722 aa23.62■■□□□ 1.37
CTCF-203ENST00000566078 LYPD6BQ8NI32 183 aa23.62■■□□□ 1.37
CTCF-203ENST00000566078 OR5B12Q96R08 314 aa23.62■■□□□ 1.37
CTCF-203ENST00000566078 FUT9Q9Y231 359 aa23.62■■□□□ 1.37
CTCF-203ENST00000566078 IGHV3-35A0A0C4DH35 117 aa23.62■■□□□ 1.37
CTCF-203ENST00000566078 HYPMO75409 117 aa23.62■■□□□ 1.37
CTCF-203ENST00000566078 RNF125Q96EQ8 232 aa23.62■■□□□ 1.37
CTCF-203ENST00000566078 PUS1Q9Y606 427 aaKnown RBP eCLIP23.62■■□□□ 1.37
CTCF-203ENST00000566078 ELOA3CA0A087WX78 387 aaPredicted RBP23.61■■□□□ 1.37
CTCF-203ENST00000566078 HBE1P02100 147 aa23.61■■□□□ 1.37
CTCF-203ENST00000566078 MIR17HGQ75NE6 70 aa23.61■■□□□ 1.37
CTCF-203ENST00000566078 ZNF414Q96IQ9 312 aa23.61■■□□□ 1.37
CTCF-203ENST00000566078 UHRF2Q96PU4 802 aa23.61■■□□□ 1.37
CTCF-203ENST00000566078 RNF2Q99496 336 aa23.61■■□□□ 1.37
CTCF-203ENST00000566078 WI2-2373I1.2A0A1W2PRP0 233 aa23.6■■□□□ 1.37
CTCF-203ENST00000566078 OR2C1O95371 312 aa23.6■■□□□ 1.37
CTCF-203ENST00000566078 SLC7A5P1Q8MH63 180 aa23.6■■□□□ 1.37
CTCF-203ENST00000566078 OR4F5Q8NH21 305 aa23.6■■□□□ 1.37
CTCF-203ENST00000566078 MRPL32Q9BYC8 188 aaKnown RBP23.6■■□□□ 1.37
CTCF-203ENST00000566078 RELQ04864 619 aaPredicted RBP23.59■■□□□ 1.37
CTCF-203ENST00000566078 COMMD7Q86VX2 200 aa23.59■■□□□ 1.37
CTCF-203ENST00000566078 WIPF2Q8TF74 440 aaPredicted RBP23.59■■□□□ 1.37
CTCF-203ENST00000566078 UBE2E2Q96LR5 201 aa23.59■■□□□ 1.37
CTCF-203ENST00000566078 HIGD1AQ9Y241 93 aa23.59■■□□□ 1.37
CTCF-203ENST00000566078 TEP1Q99973 2627 aaKnown RBP23.59■■□□□ 1.37
CTCF-203ENST00000566078 TRAV1-1A0A0B4J248 108 aa23.59■■□□□ 1.37
CTCF-203ENST00000566078 MED9Q9NWA0 146 aa23.59■■□□□ 1.37
CTCF-203ENST00000566078 NIPBLQ6KC79 2804 aaeCLIP23.58■■□□□ 1.37
CTCF-203ENST00000566078 FAM209BQ5JX69 171 aa23.58■■□□□ 1.36
CTCF-203ENST00000566078 LINC00305Q7Z4B0 112 aa23.58■■□□□ 1.36
CTCF-203ENST00000566078 PEF1Q9UBV8 284 aaKnown RBP23.58■■□□□ 1.36
CTCF-203ENST00000566078 LGALS1P09382 135 aaKnown RBP23.57■■□□□ 1.36
CTCF-203ENST00000566078 USF2Q15853 346 aaPredicted RBP23.57■■□□□ 1.36
CTCF-203ENST00000566078 TCTEX1D4Q5JR98 221 aa23.57■■□□□ 1.36
CTCF-203ENST00000566078 STAG3L2P0CL84 134 aa23.56■■□□□ 1.36
CTCF-203ENST00000566078 STAG3L3P0CL85 134 aa23.56■■□□□ 1.36
CTCF-203ENST00000566078 CCL20P78556 96 aa23.56■■□□□ 1.36
CTCF-203ENST00000566078 MORN5Q5VZ52 161 aa23.56■■□□□ 1.36
CTCF-203ENST00000566078 TOMM20LQ6UXN7 152 aa23.56■■□□□ 1.36
CTCF-203ENST00000566078 ZFAND3Q9H8U3 227 aa23.56■■□□□ 1.36
CTCF-203ENST00000566078 RNF114Q9Y508 228 aa23.56■■□□□ 1.36
CTCF-203ENST00000566078 BMPR1BO00238 502 aa23.55■■□□□ 1.36
CTCF-203ENST00000566078 KHDC1LQ5JSQ8 128 aa23.55■■□□□ 1.36
CTCF-203ENST00000566078 IL34Q6ZMJ4 242 aa23.55■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms