RNA–Protein interactions for RNA: ENST00000565442.1

CHD9-215, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

TSL 2

Gene CHD9, Length 703 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-215ENST00000565442 NRXN2Q9P2S2 1712 aa1.35□□□□□ -2.19
CHD9-215ENST00000565442 SMG6Q86US8 1419 aaKnown RBP1.35□□□□□ -2.19
CHD9-215ENST00000565442 TMEM212A6NML5 194 aa1.35□□□□□ -2.19
CHD9-215ENST00000565442 FAAHO00519 579 aa1.35□□□□□ -2.19
CHD9-215ENST00000565442 CHP2O43745 196 aa1.35□□□□□ -2.19
CHD9-215ENST00000565442 IGKV1-5P01602 117 aa1.35□□□□□ -2.19
CHD9-215ENST00000565442 METTL15P1P0C7V9 234 aa1.35□□□□□ -2.19
CHD9-215ENST00000565442 HIST1H1TP22492 207 aaPredicted RBP1.35□□□□□ -2.19
CHD9-215ENST00000565442 RPL5P46777 297 aaKnown RBP1.35□□□□□ -2.19
CHD9-215ENST00000565442 ZNF80P51504 273 aaPredicted RBP1.35□□□□□ -2.19
CHD9-215ENST00000565442 DEFA1P59665 94 aa1.35□□□□□ -2.19
CHD9-215ENST00000565442 PSME3P61289 254 aa1.35□□□□□ -2.19
CHD9-215ENST00000565442 RUNX1Q01196 453 aa1.35□□□□□ -2.19
CHD9-215ENST00000565442 ACOT6Q3I5F7 207 aaPredicted RBP1.35□□□□□ -2.19
CHD9-215ENST00000565442 RPL22L1Q6P5R6 122 aaKnown RBP1.35□□□□□ -2.19
CHD9-215ENST00000565442 BPIFA4PQ86YQ2 179 aa1.35□□□□□ -2.19
CHD9-215ENST00000565442 C20orf196Q8IYI0 205 aa1.35□□□□□ -2.19
CHD9-215ENST00000565442 ANKRD29Q8N6D5 301 aa1.35□□□□□ -2.19
CHD9-215ENST00000565442 C15orf53Q8NAA6 179 aa1.35□□□□□ -2.19
CHD9-215ENST00000565442 WFDC11Q8NEX6 87 aa1.35□□□□□ -2.19
CHD9-215ENST00000565442 OR8J2Q8NGG1 315 aa1.35□□□□□ -2.19
CHD9-215ENST00000565442 MCFD2Q8NI22 146 aa1.35□□□□□ -2.19
CHD9-215ENST00000565442 C10orf105Q8TEF2 133 aa1.35□□□□□ -2.19
CHD9-215ENST00000565442 RASSF5Q8WWW0 418 aa1.35□□□□□ -2.19
CHD9-215ENST00000565442 C11orf40Q8WZ69 217 aa1.35□□□□□ -2.19
CHD9-215ENST00000565442 CCDC42Q96M95 316 aa1.35□□□□□ -2.19
CHD9-215ENST00000565442 ADAT1Q9BUB4 502 aaKnown RBP1.35□□□□□ -2.19
CHD9-215ENST00000565442 CYSTM1Q9H1C7 97 aa1.35□□□□□ -2.19
CHD9-215ENST00000565442 C11orf68Q9H3H3 251 aaKnown RBP1.35□□□□□ -2.19
CHD9-215ENST00000565442 FBXL12Q9NXK8 326 aa1.35□□□□□ -2.19
CHD9-215ENST00000565442 V9GYY5 206 aaPredicted RBP1.35□□□□□ -2.19
CHD9-215ENST00000565442 CICQ96RK0 1608 aaPredicted RBP1.35□□□□□ -2.19
CHD9-215ENST00000565442 TTC21AQ8NDW8 1320 aa1.35□□□□□ -2.19
CHD9-215ENST00000565442 UBR3Q6ZT12 1888 aa1.35□□□□□ -2.19
CHD9-215ENST00000565442 MYO5AQ9Y4I1 1855 aaKnown RBP1.35□□□□□ -2.19
CHD9-215ENST00000565442 ABCC6O95255 1503 aa1.35□□□□□ -2.19
CHD9-215ENST00000565442 TIAM2Q8IVF5 1701 aa1.35□□□□□ -2.19
CHD9-215ENST00000565442 EIF3AQ14152 1382 aaKnown RBP1.34□□□□□ -2.19
CHD9-215ENST00000565442 EDC4Q6P2E9 1401 aaKnown RBP1.34□□□□□ -2.19
CHD9-215ENST00000565442 NCOA3Q9Y6Q9 1424 aa1.34□□□□□ -2.19
CHD9-215ENST00000565442 IGKV3D-7A0A0C4DH55 119 aa1.34□□□□□ -2.19
CHD9-215ENST00000565442 IGKV3OR2-268A0A0C4DH90 116 aa1.34□□□□□ -2.19
CHD9-215ENST00000565442 E2F6O75461 281 aa1.34□□□□□ -2.19
CHD9-215ENST00000565442 RPS17P08708 135 aaKnown RBP1.34□□□□□ -2.19
CHD9-215ENST00000565442 RPS20P60866 119 aaKnown RBP1.34□□□□□ -2.19
CHD9-215ENST00000565442 SURF2Q15527 256 aaPredicted RBP1.34□□□□□ -2.19
CHD9-215ENST00000565442 AAED1Q7RTV5 226 aa1.34□□□□□ -2.19
CHD9-215ENST00000565442 DCXRQ7Z4W1 244 aa1.34□□□□□ -2.19
CHD9-215ENST00000565442 LRRC25Q8N386 305 aaPredicted RBP1.34□□□□□ -2.19
CHD9-215ENST00000565442 TMEM106AQ96A25 262 aa1.34□□□□□ -2.19
CHD9-215ENST00000565442 PRTFDC1Q9NRG1 225 aa1.34□□□□□ -2.19
CHD9-215ENST00000565442 VPS29Q9UBQ0 182 aa1.34□□□□□ -2.19
CHD9-215ENST00000565442 MYOFQ9NZM1 2061 aa1.34□□□□□ -2.19
CHD9-215ENST00000565442 QSER1Q2KHR3 1735 aa1.34□□□□□ -2.2
CHD9-215ENST00000565442 NUP98P52948 1817 aa1.33□□□□□ -2.2
CHD9-215ENST00000565442 LRP5O75197 1615 aa1.33□□□□□ -2.2
CHD9-215ENST00000565442 TENM1Q9UKZ4 2725 aa1.33□□□□□ -2.2
CHD9-215ENST00000565442 DISP2A7MBM2 1401 aa1.33□□□□□ -2.2
CHD9-215ENST00000565442 ANKARQ7Z5J8 1434 aa1.33□□□□□ -2.2
CHD9-215ENST00000565442 MYH13Q9UKX3 1938 aa1.33□□□□□ -2.2
CHD9-215ENST00000565442 MRC1P22897 1456 aa1.33□□□□□ -2.2
CHD9-215ENST00000565442 BCL9LQ86UU0 1499 aa1.33□□□□□ -2.2
CHD9-215ENST00000565442 ARAP2Q8WZ64 1704 aa1.33□□□□□ -2.2
CHD9-215ENST00000565442 CLDN24A6NM45 220 aa1.33□□□□□ -2.2
CHD9-215ENST00000565442 MRPS14O60783 128 aaKnown RBP1.33□□□□□ -2.2
CHD9-215ENST00000565442 CLPSP04118 112 aa1.33□□□□□ -2.2
CHD9-215ENST00000565442 ANP32AP39687 249 aaKnown RBP1.33□□□□□ -2.2
CHD9-215ENST00000565442 MYL6P60660 151 aa1.33□□□□□ -2.2
CHD9-215ENST00000565442 SPANXN3Q5MJ09 141 aa1.33□□□□□ -2.2
CHD9-215ENST00000565442 LCN15Q6UWW0 184 aa1.33□□□□□ -2.2
CHD9-215ENST00000565442 UNQ6190/PRO20217Q6UXQ8 127 aa1.33□□□□□ -2.2
CHD9-215ENST00000565442 TRAPPC5Q8IUR0 188 aa1.33□□□□□ -2.2
CHD9-215ENST00000565442 CLDN22Q8N7P3 220 aa1.33□□□□□ -2.2
CHD9-215ENST00000565442 DCUN1D1Q96GG9 259 aa1.33□□□□□ -2.2
CHD9-215ENST00000565442 SCGB3A1Q96QR1 104 aa1.33□□□□□ -2.2
CHD9-215ENST00000565442 RETNLBQ9BQ08 111 aa1.33□□□□□ -2.2
CHD9-215ENST00000565442 YIPF3Q9GZM5 350 aa1.33□□□□□ -2.2
CHD9-215ENST00000565442 COMMD5Q9GZQ3 224 aa1.33□□□□□ -2.2
CHD9-215ENST00000565442 UBAP1Q9NZ09 502 aa1.33□□□□□ -2.2
CHD9-215ENST00000565442 SOX21Q9Y651 276 aaPredicted RBP1.33□□□□□ -2.2
CHD9-215ENST00000565442 DLEC1Q9Y238 1755 aa1.33□□□□□ -2.2
CHD9-215ENST00000565442 HEATR5BQ9P2D3 2071 aa1.33□□□□□ -2.2
CHD9-215ENST00000565442 COL4A5P29400 1685 aa1.32□□□□□ -2.2
CHD9-215ENST00000565442 OVOS2A0A0G2JMS6 1433 aa1.32□□□□□ -2.2
CHD9-215ENST00000565442 LAMA4Q16363 1823 aa1.32□□□□□ -2.2
CHD9-215ENST00000565442 IGKV2-40A0A087WW87 121 aaPredicted RBP1.32□□□□□ -2.2
CHD9-215ENST00000565442 DPRXA6NFQ7 191 aa1.32□□□□□ -2.2
CHD9-215ENST00000565442 OR4C46A6NHA9 309 aa1.32□□□□□ -2.2
CHD9-215ENST00000565442 IGKV2D-40P01614 121 aaPredicted RBP1.32□□□□□ -2.2
CHD9-215ENST00000565442 CTAG1AP78358 180 aa1.32□□□□□ -2.2
CHD9-215ENST00000565442 STX5Q13190 355 aa1.32□□□□□ -2.2
CHD9-215ENST00000565442 SPOPLQ6IQ16 392 aa1.32□□□□□ -2.2
CHD9-215ENST00000565442 LPCAT3Q6P1A2 487 aa1.32□□□□□ -2.2
CHD9-215ENST00000565442 CLVS1Q8IUQ0 354 aaPredicted RBP1.32□□□□□ -2.2
CHD9-215ENST00000565442 Q8N2B8 174 aa1.32□□□□□ -2.2
CHD9-215ENST00000565442 OR13C4Q8NGS5 318 aa1.32□□□□□ -2.2
CHD9-215ENST00000565442 DNAJC9Q8WXX5 260 aa1.32□□□□□ -2.2
CHD9-215ENST00000565442 C8orf76Q96K31 380 aa1.32□□□□□ -2.2
CHD9-215ENST00000565442 NIPSNAP1Q9BPW8 284 aa1.32□□□□□ -2.2
CHD9-215ENST00000565442 GINS4Q9BRT9 223 aa1.32□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms