RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 FXYD5Q96DB9 178 aa10.66□□□□□ -0.7
CLN3-210ENST00000563874 GRAMD2BQ96HH9 432 aa10.66□□□□□ -0.7
CLN3-210ENST00000563874 ZNF714Q96N38 554 aa10.66□□□□□ -0.7
CLN3-210ENST00000563874 ZNF430Q9H8G1 570 aaPredicted RBP10.66□□□□□ -0.7
CLN3-210ENST00000563874 TPSG1Q9NRR2 321 aa10.66□□□□□ -0.7
CLN3-210ENST00000563874 SLC25A5P05141 298 aaKnown RBP10.65□□□□□ -0.7
CLN3-210ENST00000563874 UBE2G1P62253 170 aa10.65□□□□□ -0.7
CLN3-210ENST00000563874 HCP5Q6MZN7 132 aa10.65□□□□□ -0.7
CLN3-210ENST00000563874 UNQ5815/PRO19632Q6UWF5 114 aa10.65□□□□□ -0.7
CLN3-210ENST00000563874 ZNF833PQ6ZTB9 187 aa10.65□□□□□ -0.7
CLN3-210ENST00000563874 SPATA12Q7Z6I5 190 aa10.65□□□□□ -0.7
CLN3-210ENST00000563874 H1FXQ92522 213 aaKnown RBP10.65□□□□□ -0.7
CLN3-210ENST00000563874 ALKBH7Q9BT30 221 aaPredicted RBP10.65□□□□□ -0.7
CLN3-210ENST00000563874 MBD3L4A6NDZ8 208 aaPredicted RBP10.65□□□□□ -0.7
CLN3-210ENST00000563874 MBD3L3A6NE82 208 aaPredicted RBP10.65□□□□□ -0.7
CLN3-210ENST00000563874 MBD3L5A6NJ08 208 aaPredicted RBP10.65□□□□□ -0.7
CLN3-210ENST00000563874 PRB4P10163 310 aaPredicted RBP10.65□□□□□ -0.7
CLN3-210ENST00000563874 LEMD1Q68G75 181 aa10.65□□□□□ -0.7
CLN3-210ENST00000563874 KLHDC1Q8N7A1 406 aa10.65□□□□□ -0.7
CLN3-210ENST00000563874 OR1B1Q8NGR6 318 aa10.65□□□□□ -0.7
CLN3-210ENST00000563874 MBD3L2Q8NHZ7 208 aaPredicted RBP10.65□□□□□ -0.7
CLN3-210ENST00000563874 ST6GALNAC6Q969X2 333 aa10.65□□□□□ -0.7
CLN3-210ENST00000563874 SAP30LQ9HAJ7 183 aa10.65□□□□□ -0.7
CLN3-210ENST00000563874 MRPL27Q9P0M9 148 aaKnown RBP10.65□□□□□ -0.7
CLN3-210ENST00000563874 FAM215AQ9Y5M1 114 aa10.65□□□□□ -0.7
CLN3-210ENST00000563874 TCRBV4S1A1TA0A5B7 111 aa10.64□□□□□ -0.71
CLN3-210ENST00000563874 IGFL2Q6UWQ7 119 aa10.64□□□□□ -0.71
CLN3-210ENST00000563874 LINC00322Q6ZN03 302 aaPredicted RBP10.64□□□□□ -0.71
CLN3-210ENST00000563874 OR10X1Q8NGY0 326 aa10.64□□□□□ -0.71
CLN3-210ENST00000563874 RITA1Q96K30 269 aa10.64□□□□□ -0.71
CLN3-210ENST00000563874 TACC2O95359 2948 aa10.64□□□□□ -0.71
CLN3-210ENST00000563874 IGHV3-72A0A0B4J1Y9 119 aa10.64□□□□□ -0.71
CLN3-210ENST00000563874 SPAARA0A1B0GVQ0 90 aa10.64□□□□□ -0.71
CLN3-210ENST00000563874 PGPA6NDG6 321 aa10.64□□□□□ -0.71
CLN3-210ENST00000563874 TM4SF5O14894 197 aa10.64□□□□□ -0.71
CLN3-210ENST00000563874 FCN3O75636 299 aa10.64□□□□□ -0.71
CLN3-210ENST00000563874 IGLL1P15814 213 aa10.64□□□□□ -0.71
CLN3-210ENST00000563874 WIPF2Q8TF74 440 aaPredicted RBP10.64□□□□□ -0.71
CLN3-210ENST00000563874 LINC00312Q9Y6C7 94 aa10.64□□□□□ -0.71
CLN3-210ENST00000563874 TNFSF4P23510 183 aa10.64□□□□□ -0.71
CLN3-210ENST00000563874 ATP5IP56385 69 aaPredicted RBP10.64□□□□□ -0.71
CLN3-210ENST00000563874 PRB3Q04118 309 aaPredicted RBP10.64□□□□□ -0.71
CLN3-210ENST00000563874 FAM231DQ6ZW35 169 aa10.64□□□□□ -0.71
CLN3-210ENST00000563874 PDPNQ86YL7 162 aa10.64□□□□□ -0.71
CLN3-210ENST00000563874 OR5AN1Q8NGI8 311 aa10.64□□□□□ -0.71
CLN3-210ENST00000563874 OR1L4Q8NGR5 311 aa10.64□□□□□ -0.71
CLN3-210ENST00000563874 OR8B2Q96RD0 313 aa10.64□□□□□ -0.71
CLN3-210ENST00000563874 LINC00574Q9H8X3 128 aa10.64□□□□□ -0.71
CLN3-210ENST00000563874 FSTL3O95633 263 aa10.63□□□□□ -0.71
CLN3-210ENST00000563874 VPS25Q9BRG1 176 aa10.63□□□□□ -0.71
CLN3-210ENST00000563874 TOX4O94842 621 aa10.63□□□□□ -0.71
CLN3-210ENST00000563874 HIST1H1EP10412 219 aaKnown RBP10.63□□□□□ -0.71
CLN3-210ENST00000563874 ZNF137PP52743 207 aa10.63□□□□□ -0.71
CLN3-210ENST00000563874 TMEM200BQ69YZ2 307 aa10.63□□□□□ -0.71
CLN3-210ENST00000563874 EPDR1Q9UM22 224 aa10.63□□□□□ -0.71
CLN3-210ENST00000563874 C2orf70A6NJV1 201 aa10.62□□□□□ -0.71
CLN3-210ENST00000563874 M0R296 226 aa10.62□□□□□ -0.71
CLN3-210ENST00000563874 LINC00173Q6ZV60 143 aa10.62□□□□□ -0.71
CLN3-210ENST00000563874 OR4C13Q8NGP0 309 aa10.62□□□□□ -0.71
CLN3-210ENST00000563874 ZNF596Q8TC21 504 aa10.62□□□□□ -0.71
CLN3-210ENST00000563874 URB1-AS1Q96HZ7 61 aa10.62□□□□□ -0.71
CLN3-210ENST00000563874 C7orf69Q9H7B7 122 aa10.62□□□□□ -0.71
CLN3-210ENST00000563874 POLEQ07864 2286 aa10.62□□□□□ -0.71
CLN3-210ENST00000563874 PIEZO2Q9H5I5 2752 aa10.62□□□□□ -0.71
CLN3-210ENST00000563874 TRAV9-2A0A087WT02 112 aa10.62□□□□□ -0.71
CLN3-210ENST00000563874 C20orf202A1L168 122 aa10.62□□□□□ -0.71
CLN3-210ENST00000563874 CCL25O15444 150 aa10.62□□□□□ -0.71
CLN3-210ENST00000563874 ENSAO43768 121 aaKnown RBP10.62□□□□□ -0.71
CLN3-210ENST00000563874 CD40P25942 277 aa10.62□□□□□ -0.71
CLN3-210ENST00000563874 DLX1P56177 255 aa10.62□□□□□ -0.71
CLN3-210ENST00000563874 TMEM177Q53S58 311 aa10.62□□□□□ -0.71
CLN3-210ENST00000563874 IGF2-ASQ6U949 168 aa10.62□□□□□ -0.71
CLN3-210ENST00000563874 ERASQ7Z444 233 aa10.62□□□□□ -0.71
CLN3-210ENST00000563874 DEFB124Q8NES8 71 aa10.62□□□□□ -0.71
CLN3-210ENST00000563874 OR8B3Q8NGG8 313 aa10.62□□□□□ -0.71
CLN3-210ENST00000563874 PGLYRP4Q96LB8 373 aa10.62□□□□□ -0.71
CLN3-210ENST00000563874 SSUH2Q9Y2M2 353 aa10.62□□□□□ -0.71
CLN3-210ENST00000563874 ATMQ13315 3056 aa10.62□□□□□ -0.71
CLN3-210ENST00000563874 A0A1W2PPI3 338 aa10.61□□□□□ -0.71
CLN3-210ENST00000563874 PTTG1IPP53801 180 aa10.61□□□□□ -0.71
CLN3-210ENST00000563874 RASL11AQ6T310 242 aa10.61□□□□□ -0.71
CLN3-210ENST00000563874 SSX8Q7RTT4 187 aa10.61□□□□□ -0.71
CLN3-210ENST00000563874 TMEM167AQ8TBQ9 72 aa10.61□□□□□ -0.71
CLN3-210ENST00000563874 NKX6-3A6NJ46 265 aa10.61□□□□□ -0.71
CLN3-210ENST00000563874 Q71RC1 249 aaPredicted RBP10.61□□□□□ -0.71
CLN3-210ENST00000563874 CCL17Q92583 94 aa10.61□□□□□ -0.71
CLN3-210ENST00000563874 MCRIP2Q9BUT9 160 aaKnown RBP10.61□□□□□ -0.71
CLN3-210ENST00000563874 TIMM8BQ9Y5J9 83 aaPredicted RBP10.61□□□□□ -0.71
CLN3-210ENST00000563874 FAM87AP0C7U9 286 aa10.61□□□□□ -0.71
CLN3-210ENST00000563874 KLF5Q13887 457 aaPredicted RBP10.61□□□□□ -0.71
CLN3-210ENST00000563874 LYPD2Q6UXB3 125 aa10.61□□□□□ -0.71
CLN3-210ENST00000563874 GTSF1Q8WW33 167 aa10.61□□□□□ -0.71
CLN3-210ENST00000563874 TRAV8-1A0A0A6YYK1 113 aa10.6□□□□□ -0.71
CLN3-210ENST00000563874 IGLV2-23P01705 113 aa10.6□□□□□ -0.71
CLN3-210ENST00000563874 NBEAP1P0C6P0 100 aa10.6□□□□□ -0.71
CLN3-210ENST00000563874 PF4V1P10720 104 aa10.6□□□□□ -0.71
CLN3-210ENST00000563874 MYCNOSP40205 109 aa10.6□□□□□ -0.71
CLN3-210ENST00000563874 SUB1P53999 127 aaKnown RBP eCLIP10.6□□□□□ -0.71
CLN3-210ENST00000563874 TEX36Q5VZQ5 186 aa10.6□□□□□ -0.71
CLN3-210ENST00000563874 LOXL4Q96JB6 756 aa10.6□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms