RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 DUSP14O95147 198 aaKnown RBP2.63□□□□□ -1.99
VPS35-203ENST00000562420 CA1P00915 261 aaPredicted RBP2.63□□□□□ -1.99
VPS35-203ENST00000562420 CD3DP04234 171 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 FGF1P05230 155 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 C3orf79P0CE67 100 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 HLA-DRB4P13762 266 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 B4GALT1P15291 398 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 IGLL1P15814 213 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 IGFBP3P17936 291 aaPredicted RBP2.63□□□□□ -1.99
VPS35-203ENST00000562420 NTF3P20783 257 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 VDAC1P21796 283 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 PRTN3P24158 256 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 PSMB8P28062 276 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 OPRK1P41145 380 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 ZNF83P51522 516 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 TMEM258P61165 79 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 UBE2G1P62253 170 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 RPS11P62280 158 aaKnown RBP eCLIP2.63□□□□□ -1.99
VPS35-203ENST00000562420 ZNF90Q03938 601 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 KLF5Q13887 457 aaPredicted RBP2.63□□□□□ -1.99
VPS35-203ENST00000562420 MLF2Q15773 248 aaPredicted RBP2.63□□□□□ -1.99
VPS35-203ENST00000562420 C3AR1Q16581 482 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 LRRC37A5PQ49AS3 106 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 MUC21Q5SSG8 566 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 ZNF684Q5T5D7 378 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 PLPP4Q5VZY2 271 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 Q6P435 159 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 TMEM136Q6ZRR5 245 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 SLC25A48Q6ZT89 311 aaKnown RBP2.63□□□□□ -1.99
VPS35-203ENST00000562420 GOLT1AQ6ZVE7 132 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 Q6ZVQ6 151 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 FAM231DQ6ZW35 169 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 Q71RC1 249 aaPredicted RBP2.63□□□□□ -1.99
VPS35-203ENST00000562420 HSD11B1LQ7Z5J1 315 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 SAXO1Q8IYX7 474 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 TMEM256Q8N2U0 113 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 ZNF433Q8N7K0 673 aaPredicted RBP2.63□□□□□ -1.99
VPS35-203ENST00000562420 CSNK1G2-AS1Q8NCQ2 148 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 OR5D14Q8NGL3 314 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 FAM213BQ8TBF2 198 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 NEIL2Q969S2 332 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 CHCHD1Q96BP2 118 aaKnown RBP2.63□□□□□ -1.99
VPS35-203ENST00000562420 ADAT3Q96EY9 351 aaPredicted RBP2.63□□□□□ -1.99
VPS35-203ENST00000562420 PGLYRP3Q96LB9 341 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 OR2A5Q96R48 311 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 SMIM7Q9BQ49 75 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 IKZF5Q9H5V7 419 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 PLEKHF2Q9H8W4 249 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 EDA2RQ9HAV5 297 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 IDI2-AS1Q9NZ38 188 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 PILRAQ9UKJ1 303 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 RCL1Q9Y2P8 373 aaKnown RBP2.63□□□□□ -1.99
VPS35-203ENST00000562420 KLF13Q9Y2Y9 288 aaPredicted RBP2.63□□□□□ -1.99
VPS35-203ENST00000562420 HES2Q9Y543 173 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 HLA-DRB4X5D2U9 266 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 TNRC6CQ9HCJ0 1690 aaKnown RBP2.63□□□□□ -1.99
VPS35-203ENST00000562420 SCN1AP35498 2009 aa2.63□□□□□ -1.99
VPS35-203ENST00000562420 NUP210LQ5VU65 1888 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 GON4LQ3T8J9 2241 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 LTBP1Q14766 1721 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 C3orf85A0A1B0GTC6 90 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 FAM240AA0A1B0GVK7 77 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 PRSS37A4D1T9 235 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 RIIAD1A6NNX1 92 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 E9PLD3 99 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 C11orf98E9PRG8 122 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 LMO7DNF2Z398 122 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 LINC01619G3V211 115 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 H3BUT2 72 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 SH2D1BO14796 132 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 SOCS1O15524 211 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 KLF7O75840 302 aaPredicted RBP2.62□□□□□ -1.99
VPS35-203ENST00000562420 APOMO95445 188 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 SLC25A5P05141 298 aaKnown RBP2.62□□□□□ -1.99
VPS35-203ENST00000562420 ACYP1P07311 99 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 LGALS1P09382 135 aaKnown RBP2.62□□□□□ -1.99
VPS35-203ENST00000562420 ZNF688P0C7X2 276 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 CRYGAP11844 174 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 ZNF708P17019 499 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 HMGA1P17096 107 aaKnown RBP2.62□□□□□ -1.99
VPS35-203ENST00000562420 COX5AP20674 150 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 CRYGSP22914 178 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 LMO2P25791 158 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 IL3RAP26951 378 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 HLA-DMBP28068 263 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 PEBP1P30086 187 aaKnown RBP2.62□□□□□ -1.99
VPS35-203ENST00000562420 MPV17P39210 176 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 ZNF133P52736 654 aaPredicted RBP2.62□□□□□ -1.99
VPS35-203ENST00000562420 FBXW4P57775 412 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 RPS15AP62244 130 aaKnown RBP2.62□□□□□ -1.99
VPS35-203ENST00000562420 RPL23P62829 140 aaKnown RBP2.62□□□□□ -1.99
VPS35-203ENST00000562420 GNG5P63218 68 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 MRPS36P82909 103 aaKnown RBP2.62□□□□□ -1.99
VPS35-203ENST00000562420 LAMTOR4Q0VGL1 99 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 FUT5Q11128 374 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 PPP1R1AQ13522 171 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 TIGITQ495A1 244 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 Q499Y3 187 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 ZNF542PQ5EBM4 170 aa2.62□□□□□ -1.99
VPS35-203ENST00000562420 IBA57Q5T440 356 aaKnown RBP2.62□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms