RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 GATAD1Q8WUU5 269 aa16.61■□□□□ 0.25
CLN3-209ENST00000561689 UHRF2Q96PU4 802 aa16.61■□□□□ 0.25
CLN3-209ENST00000561689 KLK9Q9UKQ9 250 aa16.61■□□□□ 0.25
CLN3-209ENST00000561689 SNAPINO95295 136 aa16.6■□□□□ 0.25
CLN3-209ENST00000561689 OR5G3P0C626 314 aa16.6■□□□□ 0.25
CLN3-209ENST00000561689 TMEM95Q3KNT9 176 aa16.6■□□□□ 0.25
CLN3-209ENST00000561689 MORN5Q5VZ52 161 aa16.6■□□□□ 0.25
CLN3-209ENST00000561689 NECAP1Q8NC96 275 aa16.6■□□□□ 0.25
CLN3-209ENST00000561689 SMR3AQ99954 134 aa16.6■□□□□ 0.25
CLN3-209ENST00000561689 C19orf24Q9BVV8 132 aa16.6■□□□□ 0.25
CLN3-209ENST00000561689 LOC102723971A0A1B0GUV8 181 aa16.6■□□□□ 0.25
CLN3-209ENST00000561689 OR2T8A6NH00 312 aa16.6■□□□□ 0.25
CLN3-209ENST00000561689 AP4M1O00189 453 aa16.6■□□□□ 0.25
CLN3-209ENST00000561689 BCL2P10415 239 aa16.6■□□□□ 0.25
CLN3-209ENST00000561689 ZNF506Q5JVG8 444 aa16.6■□□□□ 0.25
CLN3-209ENST00000561689 C10orf113Q5VZT2 155 aa16.6■□□□□ 0.25
CLN3-209ENST00000561689 CXorf1O96002 111 aa16.59■□□□□ 0.25
CLN3-209ENST00000561689 RD3LP0DJH9 198 aa16.59■□□□□ 0.25
CLN3-209ENST00000561689 OR1L4Q8NGR5 311 aa16.59■□□□□ 0.25
CLN3-209ENST00000561689 VN1R17PQ8TDU5 208 aa16.59■□□□□ 0.25
CLN3-209ENST00000561689 TRAV5A0A0B4J249 113 aa16.58■□□□□ 0.25
CLN3-209ENST00000561689 PFDN5Q99471 154 aa16.58■□□□□ 0.25
CLN3-209ENST00000561689 PPIFP30405 207 aaKnown RBP16.58■□□□□ 0.24
CLN3-209ENST00000561689 RBMS3Q6XE24 437 aaKnown RBP16.58■□□□□ 0.24
CLN3-209ENST00000561689 CLRN3Q8NCR9 226 aa16.58■□□□□ 0.24
CLN3-209ENST00000561689 TRAV30A0A087WSZ9 112 aa16.57■□□□□ 0.24
CLN3-209ENST00000561689 HYPMO75409 117 aa16.57■□□□□ 0.24
CLN3-209ENST00000561689 IFNA1P01562 189 aa16.57■□□□□ 0.24
CLN3-209ENST00000561689 LYZP61626 148 aa16.57■□□□□ 0.24
CLN3-209ENST00000561689 KHDC3LQ587J8 217 aa16.57■□□□□ 0.24
CLN3-209ENST00000561689 ZNF502Q8TBZ5 544 aa16.57■□□□□ 0.24
CLN3-209ENST00000561689 TECRQ9NZ01 308 aaKnown RBP16.57■□□□□ 0.24
CLN3-209ENST00000561689 ELOA3CA0A087WX78 387 aaPredicted RBP16.57■□□□□ 0.24
CLN3-209ENST00000561689 TRGV3P03979 118 aa16.57■□□□□ 0.24
CLN3-209ENST00000561689 PMS2P11Q13670 270 aa16.57■□□□□ 0.24
CLN3-209ENST00000561689 LINC00305Q7Z4B0 112 aa16.57■□□□□ 0.24
CLN3-209ENST00000561689 SLC35B3Q9H1N7 401 aa16.57■□□□□ 0.24
CLN3-209ENST00000561689 VAX2Q9UIW0 290 aa16.57■□□□□ 0.24
CLN3-209ENST00000561689 PAGE4O60829 102 aa16.56■□□□□ 0.24
CLN3-209ENST00000561689 FABP1P07148 127 aa16.56■□□□□ 0.24
CLN3-209ENST00000561689 CTSGP08311 255 aa16.56■□□□□ 0.24
CLN3-209ENST00000561689 GCHFRP30047 84 aa16.56■□□□□ 0.24
CLN3-209ENST00000561689 PSMB3P49720 205 aa16.56■□□□□ 0.24
CLN3-209ENST00000561689 UBE2G2P60604 165 aa16.56■□□□□ 0.24
CLN3-209ENST00000561689 MRPL32Q9BYC8 188 aaKnown RBP16.56■□□□□ 0.24
CLN3-209ENST00000561689 TOMM40O96008 361 aa16.55■□□□□ 0.24
CLN3-209ENST00000561689 HSPB1P04792 205 aaKnown RBP16.55■□□□□ 0.24
CLN3-209ENST00000561689 CLEC3BP05452 202 aa16.55■□□□□ 0.24
CLN3-209ENST00000561689 C8orf88P0DMB2 117 aa16.55■□□□□ 0.24
CLN3-209ENST00000561689 GPR183P32249 361 aa16.55■□□□□ 0.24
CLN3-209ENST00000561689 CEBPGP53567 150 aa16.55■□□□□ 0.24
CLN3-209ENST00000561689 ATP5G2Q06055 141 aa16.55■□□□□ 0.24
CLN3-209ENST00000561689 OR51G1Q8NGK1 321 aa16.55■□□□□ 0.24
CLN3-209ENST00000561689 RNF2Q99496 336 aa16.55■□□□□ 0.24
CLN3-209ENST00000561689 TXN2Q99757 166 aa16.55■□□□□ 0.24
CLN3-209ENST00000561689 CHRDL1Q9BU40 450 aa16.55■□□□□ 0.24
CLN3-209ENST00000561689 SMDT1Q9H4I9 107 aa16.55■□□□□ 0.24
CLN3-209ENST00000561689 OR7C2O60412 319 aa16.55■□□□□ 0.24
CLN3-209ENST00000561689 SRP19P09132 144 aaKnown RBP16.55■□□□□ 0.24
CLN3-209ENST00000561689 HNF1AP20823 631 aa16.55■□□□□ 0.24
CLN3-209ENST00000561689 TPPP2P59282 170 aa16.55■□□□□ 0.24
CLN3-209ENST00000561689 TAS2R45P59539 299 aa16.55■□□□□ 0.24
CLN3-209ENST00000561689 PLP1P60201 277 aa16.55■□□□□ 0.24
CLN3-209ENST00000561689 YPEL3P61236 119 aaPredicted RBP16.55■□□□□ 0.24
CLN3-209ENST00000561689 EEF1AKMT3Q96AZ1 226 aa16.55■□□□□ 0.24
CLN3-209ENST00000561689 ZNF503Q96F45 646 aa16.55■□□□□ 0.24
CLN3-209ENST00000561689 CCDC140Q96MF4 163 aa16.55■□□□□ 0.24
CLN3-209ENST00000561689 SLC25A2Q9BXI2 301 aa16.55■□□□□ 0.24
CLN3-209ENST00000561689 KLK15Q9H2R5 256 aa16.55■□□□□ 0.24
CLN3-209ENST00000561689 MANBALQ9NQG1 85 aa16.55■□□□□ 0.24
CLN3-209ENST00000561689 FCGR2BP31994 310 aaPredicted RBP16.54■□□□□ 0.24
CLN3-209ENST00000561689 CLEC19AQ6UXS0 136 aa16.54■□□□□ 0.24
CLN3-209ENST00000561689 ZNF329Q86UD4 541 aa16.54■□□□□ 0.24
CLN3-209ENST00000561689 FAM167A-AS1Q96KT0 104 aa16.54■□□□□ 0.24
CLN3-209ENST00000561689 PRSS22Q9GZN4 317 aa16.54■□□□□ 0.24
CLN3-209ENST00000561689 NPFFR1Q9GZQ6 430 aa16.54■□□□□ 0.24
CLN3-209ENST00000561689 IL4P05112 153 aa16.53■□□□□ 0.24
CLN3-209ENST00000561689 PF4V1P10720 104 aa16.53■□□□□ 0.24
CLN3-209ENST00000561689 ADMP35318 185 aa16.53■□□□□ 0.24
CLN3-209ENST00000561689 AKR1C3P42330 323 aa16.53■□□□□ 0.24
CLN3-209ENST00000561689 CFHR3Q02985 330 aa16.53■□□□□ 0.24
CLN3-209ENST00000561689 KIAA0141Q14154 515 aaPredicted RBP16.53■□□□□ 0.24
CLN3-209ENST00000561689 LCNL1Q6ZST4 164 aa16.53■□□□□ 0.24
CLN3-209ENST00000561689 ZNF491Q8N8L2 437 aa16.53■□□□□ 0.24
CLN3-209ENST00000561689 CYB561D1Q8N8Q1 229 aa16.53■□□□□ 0.24
CLN3-209ENST00000561689 OR5AU1Q8NGC0 362 aa16.53■□□□□ 0.24
CLN3-209ENST00000561689 FLNBO75369 2602 aaKnown RBP16.53■□□□□ 0.24
CLN3-209ENST00000561689 IGHV3-35A0A0C4DH35 117 aa16.53■□□□□ 0.24
CLN3-209ENST00000561689 FAM223BA6NKX1 122 aa16.53■□□□□ 0.24
CLN3-209ENST00000561689 OR10J4P0C629 311 aa16.53■□□□□ 0.24
CLN3-209ENST00000561689 CD81P60033 236 aa16.53■□□□□ 0.24
CLN3-209ENST00000561689 MEF2BQ02080 365 aaPredicted RBP16.53■□□□□ 0.24
CLN3-209ENST00000561689 FAM223AQ8IWN6 122 aa16.53■□□□□ 0.24
CLN3-209ENST00000561689 ZNF702PQ9H963 129 aa16.53■□□□□ 0.24
CLN3-209ENST00000561689 HIGD1AQ9Y241 93 aa16.53■□□□□ 0.24
CLN3-209ENST00000561689 ANK3Q12955 4377 aaKnown RBP16.52■□□□□ 0.24
CLN3-209ENST00000561689 TRBV7-1A0A0A6YYK4 115 aa16.52■□□□□ 0.24
CLN3-209ENST00000561689 IGLV1-40P01703 118 aa16.52■□□□□ 0.24
CLN3-209ENST00000561689 LEMD1Q68G75 181 aa16.52■□□□□ 0.24
CLN3-209ENST00000561689 PQLC2Q6ZP29 291 aa16.52■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms