RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 S100A7P31151 101 aa4.32□□□□□ -1.72
VPS13C-209ENST00000560637 GALR1P47211 349 aa4.32□□□□□ -1.72
VPS13C-209ENST00000560637 CNN1P51911 297 aaKnown RBP4.32□□□□□ -1.72
VPS13C-209ENST00000560637 CD81P60033 236 aa4.32□□□□□ -1.72
VPS13C-209ENST00000560637 PAX8Q06710 450 aa4.32□□□□□ -1.72
VPS13C-209ENST00000560637 FAM209BQ5JX69 171 aa4.32□□□□□ -1.72
VPS13C-209ENST00000560637 BPIFA4PQ86YQ2 179 aa4.32□□□□□ -1.72
VPS13C-209ENST00000560637 ODF3L1Q8IXM7 274 aa4.32□□□□□ -1.72
VPS13C-209ENST00000560637 OR11H1Q8NG94 326 aa4.32□□□□□ -1.72
VPS13C-209ENST00000560637 OR11H6Q8NGC7 330 aa4.32□□□□□ -1.72
VPS13C-209ENST00000560637 AQP10Q96PS8 301 aa4.32□□□□□ -1.72
VPS13C-209ENST00000560637 PFDN5Q99471 154 aa4.32□□□□□ -1.72
VPS13C-209ENST00000560637 RARRES2Q99969 163 aa4.32□□□□□ -1.72
VPS13C-209ENST00000560637 SCRT1Q9BWW7 348 aa4.32□□□□□ -1.72
VPS13C-209ENST00000560637 OOSP1A8MZH6 123 aa4.32□□□□□ -1.72
VPS13C-209ENST00000560637 RNASE2P10153 161 aaKnown RBP4.32□□□□□ -1.72
VPS13C-209ENST00000560637 TREML4Q6UXN2 200 aa4.32□□□□□ -1.72
VPS13C-209ENST00000560637 GATAD1Q8WUU5 269 aa4.32□□□□□ -1.72
VPS13C-209ENST00000560637 RNF125Q96EQ8 232 aa4.32□□□□□ -1.72
VPS13C-209ENST00000560637 ELOVL1Q9BW60 279 aa4.32□□□□□ -1.72
VPS13C-209ENST00000560637 TOLLIPQ9H0E2 274 aa4.32□□□□□ -1.72
VPS13C-209ENST00000560637 F11RQ9Y624 299 aaKnown RBP4.32□□□□□ -1.72
VPS13C-209ENST00000560637 NOTCH1P46531 2555 aa4.32□□□□□ -1.72
VPS13C-209ENST00000560637 IGHV7-81A0A0B4J1V7 117 aa4.32□□□□□ -1.72
VPS13C-209ENST00000560637 DNAJC9-AS1A6NH13 148 aa4.32□□□□□ -1.72
VPS13C-209ENST00000560637 J3QLI3 93 aa4.32□□□□□ -1.72
VPS13C-209ENST00000560637 GGCTO75223 188 aaKnown RBP4.32□□□□□ -1.72
VPS13C-209ENST00000560637 ORM1P02763 201 aa4.32□□□□□ -1.72
VPS13C-209ENST00000560637 ZNF705DP0CH99 300 aaPredicted RBP4.32□□□□□ -1.72
VPS13C-209ENST00000560637 ZNF705BP0CI00 300 aaPredicted RBP4.32□□□□□ -1.72
VPS13C-209ENST00000560637 S100PP25815 95 aa4.32□□□□□ -1.72
VPS13C-209ENST00000560637 CRYBB3P26998 211 aa4.32□□□□□ -1.72
VPS13C-209ENST00000560637 FXYD7P58549 80 aa4.32□□□□□ -1.72
VPS13C-209ENST00000560637 ERVFC1-1P60608 527 aa4.32□□□□□ -1.72
VPS13C-209ENST00000560637 SSBP2P81877 361 aaPredicted RBP4.32□□□□□ -1.72
VPS13C-209ENST00000560637 TMEM41BQ5BJD5 291 aa4.32□□□□□ -1.72
VPS13C-209ENST00000560637 GOLT1AQ6ZVE7 132 aa4.32□□□□□ -1.72
VPS13C-209ENST00000560637 CACNG8Q8WXS5 425 aa4.32□□□□□ -1.72
VPS13C-209ENST00000560637 RCC1LQ96I51 464 aaKnown RBP4.32□□□□□ -1.72
VPS13C-209ENST00000560637 NDFIP1Q9BT67 221 aa4.32□□□□□ -1.72
VPS13C-209ENST00000560637 SERTM2A0A1B0GWG4 89 aa4.31□□□□□ -1.72
VPS13C-209ENST00000560637 A0A1W2PPQ1 181 aa4.31□□□□□ -1.72
VPS13C-209ENST00000560637 NDUFB4O95168 129 aa4.31□□□□□ -1.72
VPS13C-209ENST00000560637 IGLV2-14P01704 120 aa4.31□□□□□ -1.72
VPS13C-209ENST00000560637 GNG5P63218 68 aa4.31□□□□□ -1.72
VPS13C-209ENST00000560637 LAMTOR1Q6IAA8 161 aa4.31□□□□□ -1.72
VPS13C-209ENST00000560637 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa4.31□□□□□ -1.72
VPS13C-209ENST00000560637 STPG2Q8N412 459 aa4.31□□□□□ -1.72
VPS13C-209ENST00000560637 Q8N9W7 124 aa4.31□□□□□ -1.72
VPS13C-209ENST00000560637 OR1L6Q8NGR2 347 aa4.31□□□□□ -1.72
VPS13C-209ENST00000560637 OR1P1Q8NH06 330 aa4.31□□□□□ -1.72
VPS13C-209ENST00000560637 TUBA4BQ9H853 241 aa4.31□□□□□ -1.72
VPS13C-209ENST00000560637 CTXND1A0A1B0GTU2 59 aa4.31□□□□□ -1.72
VPS13C-209ENST00000560637 SFTA3P0C7M3 94 aa4.31□□□□□ -1.72
VPS13C-209ENST00000560637 C8orf88P0DMB2 117 aa4.31□□□□□ -1.72
VPS13C-209ENST00000560637 CGB3P0DN86 165 aa4.31□□□□□ -1.72
VPS13C-209ENST00000560637 CGB7P0DN87 165 aa4.31□□□□□ -1.72
VPS13C-209ENST00000560637 RPS10P46783 165 aaKnown RBP4.31□□□□□ -1.72
VPS13C-209ENST00000560637 SELENOTP62341 195 aa4.31□□□□□ -1.72
VPS13C-209ENST00000560637 RELQ04864 619 aaPredicted RBP4.31□□□□□ -1.72
VPS13C-209ENST00000560637 HSD17B13Q7Z5P4 300 aaPredicted RBP4.31□□□□□ -1.72
VPS13C-209ENST00000560637 LINC00311Q8N616 119 aa4.31□□□□□ -1.72
VPS13C-209ENST00000560637 OR51M1Q9H341 326 aa4.31□□□□□ -1.72
VPS13C-209ENST00000560637 SEPSECSQ9HD40 501 aaKnown RBP4.31□□□□□ -1.72
VPS13C-209ENST00000560637 DSCAML1Q8TD84 2053 aa4.31□□□□□ -1.72
VPS13C-209ENST00000560637 NIPBLQ6KC79 2804 aaeCLIP4.31□□□□□ -1.72
VPS13C-209ENST00000560637 RBFOX3A6NFN3 312 aa4.31□□□□□ -1.72
VPS13C-209ENST00000560637 PMS2P5A8MQ11 134 aa4.31□□□□□ -1.72
VPS13C-209ENST00000560637 MDKP21741 143 aaPredicted RBP4.31□□□□□ -1.72
VPS13C-209ENST00000560637 BMI1P35226 326 aa4.31□□□□□ -1.72
VPS13C-209ENST00000560637 RHEBQ15382 184 aa4.31□□□□□ -1.72
VPS13C-209ENST00000560637 TMEM144Q7Z5S9 345 aa4.31□□□□□ -1.72
VPS13C-209ENST00000560637 C11orf42Q8N5U0 333 aa4.31□□□□□ -1.72
VPS13C-209ENST00000560637 CYB561D1Q8N8Q1 229 aa4.31□□□□□ -1.72
VPS13C-209ENST00000560637 LRTM2Q8N967 370 aa4.31□□□□□ -1.72
VPS13C-209ENST00000560637 PRDM13Q9H4Q3 707 aa4.31□□□□□ -1.72
VPS13C-209ENST00000560637 FNDC4Q9H6D8 234 aaPredicted RBP4.31□□□□□ -1.72
VPS13C-209ENST00000560637 ANAPC10Q9UM13 185 aa4.31□□□□□ -1.72
VPS13C-209ENST00000560637 H7BYZ3 331 aa4.3□□□□□ -1.72
VPS13C-209ENST00000560637 M0R3E3 92 aa4.3□□□□□ -1.72
VPS13C-209ENST00000560637 NBEAP1P0C6P0 100 aa4.3□□□□□ -1.72
VPS13C-209ENST00000560637 MMP9P14780 707 aa4.3□□□□□ -1.72
VPS13C-209ENST00000560637 ATP5G3P48201 142 aa4.3□□□□□ -1.72
VPS13C-209ENST00000560637 CAMPP49913 170 aa4.3□□□□□ -1.72
VPS13C-209ENST00000560637 BRWD1-AS2P59051 145 aa4.3□□□□□ -1.72
VPS13C-209ENST00000560637 DLK1P80370 383 aa4.3□□□□□ -1.72
VPS13C-209ENST00000560637 EXOC3-AS1Q8N2X6 119 aa4.3□□□□□ -1.72
VPS13C-209ENST00000560637 ASB13Q8WXK3 278 aa4.3□□□□□ -1.72
VPS13C-209ENST00000560637 BORCS7Q96B45 105 aa4.3□□□□□ -1.72
VPS13C-209ENST00000560637 NDUFA4L2Q9NRX3 87 aa4.3□□□□□ -1.72
VPS13C-209ENST00000560637 TMEM14BQ9NUH8 114 aa4.3□□□□□ -1.72
VPS13C-209ENST00000560637 GAR1Q9NY12 217 aaKnown RBP4.3□□□□□ -1.72
VPS13C-209ENST00000560637 MLXQ9UH92 298 aa4.3□□□□□ -1.72
VPS13C-209ENST00000560637 A0A1W2PS18 150 aa4.3□□□□□ -1.72
VPS13C-209ENST00000560637 PGPEP1LA6NFU8 196 aa4.3□□□□□ -1.72
VPS13C-209ENST00000560637 TSPAN9O75954 239 aa4.3□□□□□ -1.72
VPS13C-209ENST00000560637 SEC11BP0C7V7 166 aa4.3□□□□□ -1.72
VPS13C-209ENST00000560637 HIST1H1BP16401 226 aaKnown RBP4.3□□□□□ -1.72
VPS13C-209ENST00000560637 RPL35AP18077 110 aaKnown RBP4.3□□□□□ -1.72
VPS13C-209ENST00000560637 GNG4P50150 75 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 139.7 ms