RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 RNF141Q8WVD5 230 aa7.09□□□□□ -1.27
LDLR-211ENST00000560173 CACNG8Q8WXS5 425 aa7.09□□□□□ -1.27
LDLR-211ENST00000560173 SMIM8Q96KF7 97 aa7.09□□□□□ -1.27
LDLR-211ENST00000560173 HIPK2Q9H2X6 1198 aa7.09□□□□□ -1.27
LDLR-211ENST00000560173 MRPL36Q9P0J6 103 aaKnown RBP7.09□□□□□ -1.27
LDLR-211ENST00000560173 PFDN2Q9UHV9 154 aa7.09□□□□□ -1.27
LDLR-211ENST00000560173 UFC1Q9Y3C8 167 aa7.09□□□□□ -1.27
LDLR-211ENST00000560173 LSM4Q9Y4Z0 139 aaKnown RBP7.09□□□□□ -1.27
LDLR-211ENST00000560173 IZUMO1RA6ND01 250 aa7.08□□□□□ -1.28
LDLR-211ENST00000560173 NUPL2O15504 423 aaKnown RBP7.08□□□□□ -1.28
LDLR-211ENST00000560173 GNG7O60262 68 aa7.08□□□□□ -1.28
LDLR-211ENST00000560173 CFDP00746 253 aaPredicted RBP7.08□□□□□ -1.28
LDLR-211ENST00000560173 C8orf88P0DMB2 117 aa7.08□□□□□ -1.28
LDLR-211ENST00000560173 CBLN1P23435 193 aa7.08□□□□□ -1.28
LDLR-211ENST00000560173 OPRK1P41145 380 aa7.08□□□□□ -1.28
LDLR-211ENST00000560173 RAB5CP51148 216 aa7.08□□□□□ -1.28
LDLR-211ENST00000560173 POLR2GP62487 172 aaKnown RBP eCLIP7.08□□□□□ -1.28
LDLR-211ENST00000560173 RELQ04864 619 aaPredicted RBP7.08□□□□□ -1.28
LDLR-211ENST00000560173 DEFB114Q30KQ6 69 aa7.08□□□□□ -1.28
LDLR-211ENST00000560173 CD300EQ496F6 205 aaPredicted RBP7.08□□□□□ -1.28
LDLR-211ENST00000560173 TM4SF20Q53R12 229 aa7.08□□□□□ -1.28
LDLR-211ENST00000560173 LCN12Q6JVE5 192 aa7.08□□□□□ -1.28
LDLR-211ENST00000560173 ALKAL2Q6UX46 152 aa7.08□□□□□ -1.28
LDLR-211ENST00000560173 OR2K2Q8NGT1 345 aa7.08□□□□□ -1.28
LDLR-211ENST00000560173 OR4X1Q8NH49 305 aa7.08□□□□□ -1.28
LDLR-211ENST00000560173 RNASEH2CQ8TDP1 164 aaKnown RBP7.08□□□□□ -1.28
LDLR-211ENST00000560173 DYNLRB2Q8TF09 96 aa7.08□□□□□ -1.28
LDLR-211ENST00000560173 MARC2Q969Z3 335 aa7.08□□□□□ -1.28
LDLR-211ENST00000560173 C11orf1Q9H5F2 150 aa7.08□□□□□ -1.28
LDLR-211ENST00000560173 TECRQ9NZ01 308 aaKnown RBP7.08□□□□□ -1.28
LDLR-211ENST00000560173 COL7A1Q02388 2944 aa7.07□□□□□ -1.28
LDLR-211ENST00000560173 IGHV3OR16-8A0A075B7F1 116 aa7.07□□□□□ -1.28
LDLR-211ENST00000560173 RPS10-NUDT3A0A1W2PQS6 291 aa7.07□□□□□ -1.28
LDLR-211ENST00000560173 CLN5O75503 358 aa7.07□□□□□ -1.28
LDLR-211ENST00000560173 TMEM50AO95807 157 aa7.07□□□□□ -1.28
LDLR-211ENST00000560173 IFNA10P01566 189 aa7.07□□□□□ -1.28
LDLR-211ENST00000560173 SEC11BP0C7V7 166 aa7.07□□□□□ -1.28
LDLR-211ENST00000560173 IAPPP10997 89 aa7.07□□□□□ -1.28
LDLR-211ENST00000560173 SULT1A1P50225 295 aa7.07□□□□□ -1.28
LDLR-211ENST00000560173 ATP5IP56385 69 aaPredicted RBP7.07□□□□□ -1.28
LDLR-211ENST00000560173 BLOC1S1P78537 153 aa7.07□□□□□ -1.28
LDLR-211ENST00000560173 EWSR1Q01844 656 aaKnown RBP eCLIP7.07□□□□□ -1.28
LDLR-211ENST00000560173 MLANAQ16655 118 aa7.07□□□□□ -1.28
LDLR-211ENST00000560173 DEFB121Q5J5C9 76 aa7.07□□□□□ -1.28
LDLR-211ENST00000560173 TMEM252Q8N6L7 170 aa7.07□□□□□ -1.28
LDLR-211ENST00000560173 OR1S2Q8NGQ3 325 aa7.07□□□□□ -1.28
LDLR-211ENST00000560173 GNPNAT1Q96EK6 184 aaPredicted RBP7.07□□□□□ -1.28
LDLR-211ENST00000560173 SAT2Q96F10 170 aaPredicted RBP7.07□□□□□ -1.28
LDLR-211ENST00000560173 MAGT1Q9H0U3 335 aa7.07□□□□□ -1.28
LDLR-211ENST00000560173 DAZ1Q9NQZ3 744 aaKnown RBP7.07□□□□□ -1.28
LDLR-211ENST00000560173 CYTL1Q9NRR1 136 aa7.07□□□□□ -1.28
LDLR-211ENST00000560173 FBXL17Q9UF56 701 aa7.07□□□□□ -1.28
LDLR-211ENST00000560173 MLXQ9UH92 298 aa7.07□□□□□ -1.28
LDLR-211ENST00000560173 C15orf62A8K5M9 175 aa7.06□□□□□ -1.28
LDLR-211ENST00000560173 K7EMT4 169 aa7.06□□□□□ -1.28
LDLR-211ENST00000560173 IFNA5P01569 189 aa7.06□□□□□ -1.28
LDLR-211ENST00000560173 IGKV1-17P01599 117 aa7.06□□□□□ -1.28
LDLR-211ENST00000560173 NMBP08949 121 aa7.06□□□□□ -1.28
LDLR-211ENST00000560173 RND2P52198 227 aa7.06□□□□□ -1.28
LDLR-211ENST00000560173 ATP6V1FQ16864 119 aa7.06□□□□□ -1.28
LDLR-211ENST00000560173 BTNL8Q6UX41 500 aa7.06□□□□□ -1.28
LDLR-211ENST00000560173 SLC16A13Q7RTY0 426 aa7.06□□□□□ -1.28
LDLR-211ENST00000560173 SLC7A5P1Q8MH63 180 aa7.06□□□□□ -1.28
LDLR-211ENST00000560173 TMEM61Q8N0U2 210 aa7.06□□□□□ -1.28
LDLR-211ENST00000560173 TMEM116Q8NCL8 245 aa7.06□□□□□ -1.28
LDLR-211ENST00000560173 C20orf24Q9BUV8 137 aa7.06□□□□□ -1.28
LDLR-211ENST00000560173 ARV1Q9H2C2 271 aa7.06□□□□□ -1.28
LDLR-211ENST00000560173 PSENENQ9NZ42 101 aa7.06□□□□□ -1.28
LDLR-211ENST00000560173 MRPL27Q9P0M9 148 aaKnown RBP7.06□□□□□ -1.28
LDLR-211ENST00000560173 ZNF785A8K8V0 405 aa7.05□□□□□ -1.28
LDLR-211ENST00000560173 UMAD1C9J7I0 102 aa7.05□□□□□ -1.28
LDLR-211ENST00000560173 ZNF207O43670 478 aaKnown RBP7.05□□□□□ -1.28
LDLR-211ENST00000560173 YIF1AO95070 293 aa7.05□□□□□ -1.28
LDLR-211ENST00000560173 IFNA4P05014 189 aa7.05□□□□□ -1.28
LDLR-211ENST00000560173 IGLC1P0CG04 106 aa7.05□□□□□ -1.28
LDLR-211ENST00000560173 CD69Q07108 199 aa7.05□□□□□ -1.28
LDLR-211ENST00000560173 TIGITQ495A1 244 aa7.05□□□□□ -1.28
LDLR-211ENST00000560173 RPL7L1Q6DKI1 246 aaKnown RBP7.05□□□□□ -1.28
LDLR-211ENST00000560173 ETFRF1Q6IPR1 90 aa7.05□□□□□ -1.28
LDLR-211ENST00000560173 TOMM20LQ6UXN7 152 aa7.05□□□□□ -1.28
LDLR-211ENST00000560173 ZNF600Q6ZNG1 722 aa7.05□□□□□ -1.28
LDLR-211ENST00000560173 Q8N1Y9 231 aa7.05□□□□□ -1.28
LDLR-211ENST00000560173 ATP5SQ99766 215 aa7.05□□□□□ -1.28
LDLR-211ENST00000560173 B9D2Q9BPU9 175 aa7.05□□□□□ -1.28
LDLR-211ENST00000560173 GINS3Q9BRX5 216 aa7.05□□□□□ -1.28
LDLR-211ENST00000560173 PARD6GQ9BYG4 376 aaPredicted RBP7.05□□□□□ -1.28
LDLR-211ENST00000560173 ZFAND3Q9H8U3 227 aa7.05□□□□□ -1.28
LDLR-211ENST00000560173 STRAPQ9Y3F4 350 aaKnown RBP7.05□□□□□ -1.28
LDLR-211ENST00000560173 PUS1Q9Y606 427 aaKnown RBP eCLIP7.05□□□□□ -1.28
LDLR-211ENST00000560173 SELENOKQ9Y6D0 94 aa7.05□□□□□ -1.28
LDLR-211ENST00000560173 SMAD5-AS1Q9Y6J3 95 aa7.05□□□□□ -1.28
LDLR-211ENST00000560173 TRAV30A0A087WSZ9 112 aa7.04□□□□□ -1.28
LDLR-211ENST00000560173 TRAV25A0A0B4J276 109 aa7.04□□□□□ -1.28
LDLR-211ENST00000560173 IGHV7-4-1A0A0J9YVY3 117 aa7.04□□□□□ -1.28
LDLR-211ENST00000560173 IGSF23A1L1A6 192 aa7.04□□□□□ -1.28
LDLR-211ENST00000560173 FAM24AA6NFZ4 105 aa7.04□□□□□ -1.28
LDLR-211ENST00000560173 SCGB2A1O75556 95 aa7.04□□□□□ -1.28
LDLR-211ENST00000560173 OR10J1P30954 320 aa7.04□□□□□ -1.28
LDLR-211ENST00000560173 GPX4P36969 197 aaPredicted RBP7.04□□□□□ -1.28
LDLR-211ENST00000560173 SULT1A2P50226 295 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms