RNA–Protein interactions for RNA: ENST00000559658.5

CHRNA3-206, Transcript of cholinergic receptor nicotinic alpha 3 subunit, humanhuman

TSL 2

Gene CHRNA3, Length 1,889 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA3-206ENST00000559658 MAP1LC3B2A6NCE7 125 aa13.4□□□□□ -0.26
CHRNA3-206ENST00000559658 TSPAN9O75954 239 aa13.4□□□□□ -0.26
CHRNA3-206ENST00000559658 BRI3O95415 125 aa13.4□□□□□ -0.26
CHRNA3-206ENST00000559658 ORM2P19652 201 aa13.4□□□□□ -0.26
CHRNA3-206ENST00000559658 LYZP61626 148 aa13.4□□□□□ -0.26
CHRNA3-206ENST00000559658 BLOC1S1P78537 153 aa13.4□□□□□ -0.26
CHRNA3-206ENST00000559658 SRSF3P84103 164 aaKnown RBP13.4□□□□□ -0.26
CHRNA3-206ENST00000559658 OR1B1Q8NGR6 318 aa13.4□□□□□ -0.26
CHRNA3-206ENST00000559658 MAP1LC3BQ9GZQ8 125 aa13.4□□□□□ -0.26
CHRNA3-206ENST00000559658 TMPRSS5Q9H3S3 457 aa13.4□□□□□ -0.26
CHRNA3-206ENST00000559658 TRAV5A0A0B4J249 113 aa13.39□□□□□ -0.27
CHRNA3-206ENST00000559658 SEC14L6B5MCN3 397 aa13.39□□□□□ -0.27
CHRNA3-206ENST00000559658 FCGR2BP31994 310 aaPredicted RBP13.39□□□□□ -0.27
CHRNA3-206ENST00000559658 TCTEX1D4Q5JR98 221 aa13.39□□□□□ -0.27
CHRNA3-206ENST00000559658 DPPA3Q6W0C5 159 aa13.39□□□□□ -0.27
CHRNA3-206ENST00000559658 ANKRD34BA5PLL1 514 aa13.38□□□□□ -0.27
CHRNA3-206ENST00000559658 TOMM40O96008 361 aa13.38□□□□□ -0.27
CHRNA3-206ENST00000559658 MBP02144 154 aa13.38□□□□□ -0.27
CHRNA3-206ENST00000559658 RD3LP0DJH9 198 aa13.38□□□□□ -0.27
CHRNA3-206ENST00000559658 USF2Q15853 346 aaPredicted RBP13.38□□□□□ -0.27
CHRNA3-206ENST00000559658 FAM78BQ5VT40 261 aa13.38□□□□□ -0.27
CHRNA3-206ENST00000559658 C18orf65Q6ZTR6 163 aa13.38□□□□□ -0.27
CHRNA3-206ENST00000559658 OR51G1Q8NGK1 321 aa13.38□□□□□ -0.27
CHRNA3-206ENST00000559658 PBDC1Q9BVG4 233 aa13.38□□□□□ -0.27
CHRNA3-206ENST00000559658 GNB4Q9HAV0 340 aa13.38□□□□□ -0.27
CHRNA3-206ENST00000559658 TRBV7-1A0A0A6YYK4 115 aa13.38□□□□□ -0.27
CHRNA3-206ENST00000559658 CTXND1A0A1B0GTU2 59 aa13.38□□□□□ -0.27
CHRNA3-206ENST00000559658 TGOLN2O43493 480 aa13.38□□□□□ -0.27
CHRNA3-206ENST00000559658 ATP6V1G1O75348 118 aa13.38□□□□□ -0.27
CHRNA3-206ENST00000559658 IL4P05112 153 aa13.38□□□□□ -0.27
CHRNA3-206ENST00000559658 OR5G3P0C626 314 aa13.38□□□□□ -0.27
CHRNA3-206ENST00000559658 SELENOTP62341 195 aa13.38□□□□□ -0.27
CHRNA3-206ENST00000559658 KLHDC1Q8N7A1 406 aa13.38□□□□□ -0.27
CHRNA3-206ENST00000559658 ACTR3CQ9C0K3 210 aaPredicted RBP13.38□□□□□ -0.27
CHRNA3-206ENST00000559658 PUS1Q9Y606 427 aaKnown RBP eCLIP13.38□□□□□ -0.27
CHRNA3-206ENST00000559658 JMJD1CQ15652 2540 aa13.37□□□□□ -0.27
CHRNA3-206ENST00000559658 COX7A2P2O60397 106 aa13.37□□□□□ -0.27
CHRNA3-206ENST00000559658 LEMD1Q68G75 181 aa13.37□□□□□ -0.27
CHRNA3-206ENST00000559658 TEX38Q6PEX7 206 aa13.37□□□□□ -0.27
CHRNA3-206ENST00000559658 ZNF491Q8N8L2 437 aa13.37□□□□□ -0.27
CHRNA3-206ENST00000559658 OR4X2Q8NGF9 303 aa13.37□□□□□ -0.27
CHRNA3-206ENST00000559658 LINC01006Q8NI28 216 aa13.37□□□□□ -0.27
CHRNA3-206ENST00000559658 MYOZ3Q8TDC0 251 aa13.37□□□□□ -0.27
CHRNA3-206ENST00000559658 MBD3L1Q8WWY6 194 aa13.37□□□□□ -0.27
CHRNA3-206ENST00000559658 CITED4Q96RK1 184 aa13.37□□□□□ -0.27
CHRNA3-206ENST00000559658 TXN2Q99757 166 aa13.37□□□□□ -0.27
CHRNA3-206ENST00000559658 TMEM231Q9H6L2 316 aa13.37□□□□□ -0.27
CHRNA3-206ENST00000559658 CRYBA1P05813 215 aa13.36□□□□□ -0.27
CHRNA3-206ENST00000559658 YPEL3P61236 119 aaPredicted RBP13.36□□□□□ -0.27
CHRNA3-206ENST00000559658 SLC35B1P78383 322 aa13.36□□□□□ -0.27
CHRNA3-206ENST00000559658 FOXE3Q13461 319 aa13.36□□□□□ -0.27
CHRNA3-206ENST00000559658 GATAD1Q8WUU5 269 aa13.36□□□□□ -0.27
CHRNA3-206ENST00000559658 ZNF503Q96F45 646 aa13.36□□□□□ -0.27
CHRNA3-206ENST00000559658 TRAV30A0A087WSZ9 112 aa13.36□□□□□ -0.27
CHRNA3-206ENST00000559658 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP13.36□□□□□ -0.27
CHRNA3-206ENST00000559658 A0A1W2PPV4 95 aa13.36□□□□□ -0.27
CHRNA3-206ENST00000559658 NUPL2O15504 423 aaKnown RBP13.36□□□□□ -0.27
CHRNA3-206ENST00000559658 TCF21O43680 179 aa13.36□□□□□ -0.27
CHRNA3-206ENST00000559658 ARL14EPLP0DKL9 152 aa13.36□□□□□ -0.27
CHRNA3-206ENST00000559658 C10orf113Q5VZT2 155 aa13.36□□□□□ -0.27
CHRNA3-206ENST00000559658 C11orf44Q8N8P7 122 aa13.36□□□□□ -0.27
CHRNA3-206ENST00000559658 WIPF2Q8TF74 440 aaPredicted RBP13.36□□□□□ -0.27
CHRNA3-206ENST00000559658 RNF125Q96EQ8 232 aa13.36□□□□□ -0.27
CHRNA3-206ENST00000559658 USMG5Q96IX5 58 aa13.36□□□□□ -0.27
CHRNA3-206ENST00000559658 SCRT1Q9BWW7 348 aa13.36□□□□□ -0.27
CHRNA3-206ENST00000559658 DNAJC4Q9NNZ3 241 aa13.36□□□□□ -0.27
CHRNA3-206ENST00000559658 PFDN2Q9UHV9 154 aa13.36□□□□□ -0.27
CHRNA3-206ENST00000559658 FUT9Q9Y231 359 aa13.36□□□□□ -0.27
CHRNA3-206ENST00000559658 WI2-2373I1.2A0A1W2PRP0 233 aa13.35□□□□□ -0.27
CHRNA3-206ENST00000559658 BMPR1BO00238 502 aa13.35□□□□□ -0.27
CHRNA3-206ENST00000559658 SNRPCP09234 159 aaKnown RBP13.35□□□□□ -0.27
CHRNA3-206ENST00000559658 ARL3P36405 182 aa13.35□□□□□ -0.27
CHRNA3-206ENST00000559658 PLP1P60201 277 aa13.35□□□□□ -0.27
CHRNA3-206ENST00000559658 RHOBP62745 196 aa13.35□□□□□ -0.27
CHRNA3-206ENST00000559658 ZNF343Q6P1L6 599 aa13.35□□□□□ -0.27
CHRNA3-206ENST00000559658 LINC00305Q7Z4B0 112 aa13.35□□□□□ -0.27
CHRNA3-206ENST00000559658 OR5AU1Q8NGC0 362 aa13.35□□□□□ -0.27
CHRNA3-206ENST00000559658 SLC25A2Q9BXI2 301 aa13.35□□□□□ -0.27
CHRNA3-206ENST00000559658 ZFAND3Q9H8U3 227 aa13.35□□□□□ -0.27
CHRNA3-206ENST00000559658 STAG3L2P0CL84 134 aa13.34□□□□□ -0.27
CHRNA3-206ENST00000559658 STAG3L3P0CL85 134 aa13.34□□□□□ -0.27
CHRNA3-206ENST00000559658 IQCF2Q8IXL9 164 aa13.34□□□□□ -0.27
CHRNA3-206ENST00000559658 RNF152Q8N8N0 203 aa13.34□□□□□ -0.27
CHRNA3-206ENST00000559658 FAM167A-AS1Q96KT0 104 aa13.34□□□□□ -0.27
CHRNA3-206ENST00000559658 RARRES2Q99969 163 aa13.34□□□□□ -0.27
CHRNA3-206ENST00000559658 MED9Q9NWA0 146 aa13.34□□□□□ -0.27
CHRNA3-206ENST00000559658 TRAV1-1A0A0B4J248 108 aa13.33□□□□□ -0.27
CHRNA3-206ENST00000559658 C9JQL5 133 aa13.33□□□□□ -0.27
CHRNA3-206ENST00000559658 HYPMO75409 117 aa13.33□□□□□ -0.27
CHRNA3-206ENST00000559658 OR2C1O95371 312 aa13.33□□□□□ -0.27
CHRNA3-206ENST00000559658 ELANEP08246 267 aa13.33□□□□□ -0.27
CHRNA3-206ENST00000559658 NDUFA5Q16718 116 aa13.33□□□□□ -0.27
CHRNA3-206ENST00000559658 TOMM20LQ6UXN7 152 aa13.33□□□□□ -0.27
CHRNA3-206ENST00000559658 TMEM89A2RUT3 159 aa13.33□□□□□ -0.28
CHRNA3-206ENST00000559658 RPL15P61313 204 aaKnown RBP13.33□□□□□ -0.28
CHRNA3-206ENST00000559658 HAGHQ16775 308 aa13.33□□□□□ -0.28
CHRNA3-206ENST00000559658 TOR2AQ5JU69 321 aa13.33□□□□□ -0.28
CHRNA3-206ENST00000559658 UNQ9165/PRO28630Q6UXU0 137 aa13.33□□□□□ -0.28
CHRNA3-206ENST00000559658 OR1L4Q8NGR5 311 aa13.33□□□□□ -0.28
CHRNA3-206ENST00000559658 MARC2Q969Z3 335 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms