RNA–Protein interactions for RNA: ENST00000557477.1

PRPF39-212, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 724 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-212ENST00000557477 GINS3Q9BRX5 216 aa2.94□□□□□ -1.94
PRPF39-212ENST00000557477 NDFIP1Q9BT67 221 aa2.94□□□□□ -1.94
PRPF39-212ENST00000557477 EFCAB11Q9BUY7 163 aa2.94□□□□□ -1.94
PRPF39-212ENST00000557477 VAMP8Q9BV40 100 aa2.94□□□□□ -1.94
PRPF39-212ENST00000557477 PECRQ9BY49 303 aa2.94□□□□□ -1.94
PRPF39-212ENST00000557477 KRTAP4-3Q9BYR4 195 aa2.94□□□□□ -1.94
PRPF39-212ENST00000557477 SMIM3Q9BZL3 60 aa2.94□□□□□ -1.94
PRPF39-212ENST00000557477 GABARAPL1Q9H0R8 117 aa2.94□□□□□ -1.94
PRPF39-212ENST00000557477 OR51I2Q9H344 312 aa2.94□□□□□ -1.94
PRPF39-212ENST00000557477 FAM60AQ9NP50 221 aa2.94□□□□□ -1.94
PRPF39-212ENST00000557477 ENY2Q9NPA8 101 aa2.94□□□□□ -1.94
PRPF39-212ENST00000557477 CLN6Q9NWW5 311 aa2.94□□□□□ -1.94
PRPF39-212ENST00000557477 YARS2Q9Y2Z4 477 aaKnown RBP2.94□□□□□ -1.94
PRPF39-212ENST00000557477 SIGLEC9Q9Y336 463 aa2.94□□□□□ -1.94
PRPF39-212ENST00000557477 MRPS16Q9Y3D3 137 aaKnown RBP2.94□□□□□ -1.94
PRPF39-212ENST00000557477 V9GYY9 64 aa2.94□□□□□ -1.94
PRPF39-212ENST00000557477 NF1P21359 2839 aa2.94□□□□□ -1.94
PRPF39-212ENST00000557477 CCDC168Q8NDH2 2452 aa2.94□□□□□ -1.94
PRPF39-212ENST00000557477 SETD2Q9BYW2 2564 aaPredicted RBP2.94□□□□□ -1.94
PRPF39-212ENST00000557477 HIVEP3Q5T1R4 2406 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 IGLV2-33A0A075B6J2 118 aaPredicted RBP2.93□□□□□ -1.94
PRPF39-212ENST00000557477 A0A087WX48 190 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 A0A096LNJ9 63 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 IGHV1-45A0A0A0MS14 117 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 CENPVL3A0A0U1RRI6 287 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 KIR2DS1A0A191URI9 304 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 A0A1W2PRE2 83 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 MAP1LC3B2A6NCE7 125 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 NAP1L6A6NFF2 107 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 F5H5P2 479 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 K7EPK0 472 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 CCL22O00626 93 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 MPZL2O60487 215 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 NRASP01111 189 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 HLA-AP01891 365 aaKnown RBP2.93□□□□□ -1.94
PRPF39-212ENST00000557477 STATHP02808 62 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 TRGC2P03986 189 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 ERGP11308 486 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 TPT1P13693 172 aaKnown RBP2.93□□□□□ -1.94
PRPF39-212ENST00000557477 HIST1H1CP16403 213 aaKnown RBP2.93□□□□□ -1.94
PRPF39-212ENST00000557477 ATF1P18846 271 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 USF1P22415 310 aaPredicted RBP2.93□□□□□ -1.94
PRPF39-212ENST00000557477 CX3CR1P49238 355 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 TCL1AP56279 114 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 RAB10P61026 200 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 RPS25P62851 125 aaKnown RBP2.93□□□□□ -1.94
PRPF39-212ENST00000557477 HIST1H1AQ02539 215 aaPredicted RBP2.93□□□□□ -1.94
PRPF39-212ENST00000557477 KIR2DS1Q14954 304 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 PAFAH1B3Q15102 231 aaKnown RBP2.93□□□□□ -1.94
PRPF39-212ENST00000557477 RGNQ15493 299 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 MMDQ15546 238 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 HIST3H3Q16695 136 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 TRMT12Q53H54 448 aaKnown RBP2.93□□□□□ -1.94
PRPF39-212ENST00000557477 CLEC12AQ5QGZ9 265 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 FAM162BQ5T6X4 162 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 ARL9Q6T311 187 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 Q6ZVH6 145 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 ZNF676Q8N7Q3 588 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 C8orf31Q8N9H6 132 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 Q8N9L7 120 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 INO80EQ8NBZ0 244 aaPredicted RBP2.93□□□□□ -1.94
PRPF39-212ENST00000557477 OR6N2Q8NGY6 317 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 OR2T27Q8NH04 317 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 DOK4Q8TEW6 326 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 Q8WTZ3 238 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 FRZBQ92765 325 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 APOBEC3DQ96AK3 386 aaPredicted RBP2.93□□□□□ -1.94
PRPF39-212ENST00000557477 IMP4Q96G21 291 aaKnown RBP2.93□□□□□ -1.94
PRPF39-212ENST00000557477 KCTD7Q96MP8 289 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 SMR3AQ99954 134 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 ANAPC13Q9BS18 74 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 DOHHQ9BU89 302 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 ZNF471Q9BX82 626 aaPredicted RBP2.93□□□□□ -1.94
PRPF39-212ENST00000557477 MAP1LC3BQ9GZQ8 125 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 MED29Q9NX70 200 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 DNAJC27Q9NZQ0 273 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 NAT8BQ9UHF3 227 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 MCTS1Q9ULC4 181 aaKnown RBP2.93□□□□□ -1.94
PRPF39-212ENST00000557477 SIGLEC7Q9Y286 467 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 FBN3Q75N90 2809 aa2.93□□□□□ -1.94
PRPF39-212ENST00000557477 PDZD2O15018 2839 aa2.92□□□□□ -1.94
PRPF39-212ENST00000557477 ABCA2Q9BZC7 2435 aa2.92□□□□□ -1.94
PRPF39-212ENST00000557477 PRRC2CQ9Y520 2896 aaKnown RBP2.92□□□□□ -1.94
PRPF39-212ENST00000557477 DIDO1Q9BTC0 2240 aaKnown RBP2.92□□□□□ -1.94
PRPF39-212ENST00000557477 APCP25054 2843 aa2.92□□□□□ -1.94
PRPF39-212ENST00000557477 A0A087WUU8 490 aa2.92□□□□□ -1.94
PRPF39-212ENST00000557477 BORCS7-ASMTA0A0B4J1R7 106 aa2.92□□□□□ -1.94
PRPF39-212ENST00000557477 B4DEV8 164 aa2.92□□□□□ -1.94
PRPF39-212ENST00000557477 EEF1E1-BLOC1S5C9J1V9 151 aa2.92□□□□□ -1.94
PRPF39-212ENST00000557477 F5H5K5 113 aa2.92□□□□□ -1.94
PRPF39-212ENST00000557477 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP2.92□□□□□ -1.94
PRPF39-212ENST00000557477 H3BQ15 152 aa2.92□□□□□ -1.94
PRPF39-212ENST00000557477 J3QLI3 93 aa2.92□□□□□ -1.94
PRPF39-212ENST00000557477 SIRPB1O00241 398 aa2.92□□□□□ -1.94
PRPF39-212ENST00000557477 NME4O00746 187 aa2.92□□□□□ -1.94
PRPF39-212ENST00000557477 GNGT2O14610 69 aa2.92□□□□□ -1.94
PRPF39-212ENST00000557477 EEF1E1O43324 174 aaKnown RBP2.92□□□□□ -1.94
PRPF39-212ENST00000557477 SLC16A7O60669 478 aa2.92□□□□□ -1.94
PRPF39-212ENST00000557477 HSBP1O75506 76 aa2.92□□□□□ -1.94
PRPF39-212ENST00000557477 IGLC1P0CG04 106 aa2.92□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms