RNA–Protein interactions for RNA: ENST00000557455.1

CCDC88C-213, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 811 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-213ENST00000557455 KCNIP3Q9Y2W7 256 aa8.02□□□□□ -1.13
CCDC88C-213ENST00000557455 ELOA3CA0A087WX78 387 aaPredicted RBP8.01□□□□□ -1.13
CCDC88C-213ENST00000557455 FAM90A26D6RGX4 464 aa8.01□□□□□ -1.13
CCDC88C-213ENST00000557455 CTDSPLO15194 276 aa8.01□□□□□ -1.13
CCDC88C-213ENST00000557455 BUB3O43684 328 aa8.01□□□□□ -1.13
CCDC88C-213ENST00000557455 GSTZ1O43708 216 aaPredicted RBP8.01□□□□□ -1.13
CCDC88C-213ENST00000557455 TOMM40O96008 361 aa8.01□□□□□ -1.13
CCDC88C-213ENST00000557455 IFNA10P01566 189 aa8.01□□□□□ -1.13
CCDC88C-213ENST00000557455 RD3LP0DJH9 198 aa8.01□□□□□ -1.13
CCDC88C-213ENST00000557455 SIGLEC15Q6ZMC9 328 aa8.01□□□□□ -1.13
CCDC88C-213ENST00000557455 DYNC2LI1Q8TCX1 351 aa8.01□□□□□ -1.13
CCDC88C-213ENST00000557455 IL22RA2Q969J5 263 aa8.01□□□□□ -1.13
CCDC88C-213ENST00000557455 SCGB3A2Q96PL1 93 aa8.01□□□□□ -1.13
CCDC88C-213ENST00000557455 C1QTNF4Q9BXJ3 329 aa8.01□□□□□ -1.13
CCDC88C-213ENST00000557455 SEPSECSQ9HD40 501 aaKnown RBP8.01□□□□□ -1.13
CCDC88C-213ENST00000557455 NRN1Q9NPD7 142 aa8.01□□□□□ -1.13
CCDC88C-213ENST00000557455 PRR13Q9NZ81 148 aa8.01□□□□□ -1.13
CCDC88C-213ENST00000557455 CCDC59Q9P031 241 aaKnown RBP8.01□□□□□ -1.13
CCDC88C-213ENST00000557455 U3KQ87 197 aa8.01□□□□□ -1.13
CCDC88C-213ENST00000557455 IGHV4-4A0A075B6R2 117 aa8□□□□□ -1.13
CCDC88C-213ENST00000557455 PSG1P11464 419 aa8□□□□□ -1.13
CCDC88C-213ENST00000557455 CCR6P51684 374 aa8□□□□□ -1.13
CCDC88C-213ENST00000557455 NMSQ5H8A3 153 aa8□□□□□ -1.13
CCDC88C-213ENST00000557455 LGI3Q8N145 548 aa8□□□□□ -1.13
CCDC88C-213ENST00000557455 OR51G1Q8NGK1 321 aa8□□□□□ -1.13
CCDC88C-213ENST00000557455 DTD1Q8TEA8 209 aa8□□□□□ -1.13
CCDC88C-213ENST00000557455 S100ZQ8WXG8 99 aa8□□□□□ -1.13
CCDC88C-213ENST00000557455 XCL2Q9UBD3 114 aa8□□□□□ -1.13
CCDC88C-213ENST00000557455 SCP2D1Q9UJQ7 156 aa8□□□□□ -1.13
CCDC88C-213ENST00000557455 A0A0B4J2A0 478 aa7.99□□□□□ -1.13
CCDC88C-213ENST00000557455 ANKRD20A5PA0PJZ0 165 aa7.99□□□□□ -1.13
CCDC88C-213ENST00000557455 AKR1C4P17516 323 aa7.99□□□□□ -1.13
CCDC88C-213ENST00000557455 NUP62P37198 522 aaPredicted RBP7.99□□□□□ -1.13
CCDC88C-213ENST00000557455 KLF9Q13886 244 aaPredicted RBP7.99□□□□□ -1.13
CCDC88C-213ENST00000557455 ZNF846Q147U1 533 aa7.99□□□□□ -1.13
CCDC88C-213ENST00000557455 SMCO1Q147U7 214 aa7.99□□□□□ -1.13
CCDC88C-213ENST00000557455 MCFD2Q8NI22 146 aa7.99□□□□□ -1.13
CCDC88C-213ENST00000557455 RNF125Q96EQ8 232 aa7.99□□□□□ -1.13
CCDC88C-213ENST00000557455 WDR12Q9GZL7 423 aaKnown RBP7.99□□□□□ -1.13
CCDC88C-213ENST00000557455 RBKSQ9H477 322 aa7.99□□□□□ -1.13
CCDC88C-213ENST00000557455 MCUBQ9NWR8 336 aa7.99□□□□□ -1.13
CCDC88C-213ENST00000557455 HSPB7Q9UBY9 170 aa7.99□□□□□ -1.13
CCDC88C-213ENST00000557455 SHPKQ9UHJ6 478 aa7.99□□□□□ -1.13
CCDC88C-213ENST00000557455 PFDN2Q9UHV9 154 aa7.99□□□□□ -1.13
CCDC88C-213ENST00000557455 CELA1Q9UNI1 258 aa7.99□□□□□ -1.13
CCDC88C-213ENST00000557455 DEFB131BA0A096LNP1 70 aa7.98□□□□□ -1.13
CCDC88C-213ENST00000557455 ZFP92A6NM28 416 aa7.98□□□□□ -1.13
CCDC88C-213ENST00000557455 H3BMM0 161 aa7.98□□□□□ -1.13
CCDC88C-213ENST00000557455 ANXA3P12429 323 aa7.98□□□□□ -1.13
CCDC88C-213ENST00000557455 NKX2-1P43699 371 aaPredicted RBP7.98□□□□□ -1.13
CCDC88C-213ENST00000557455 ZNF767PQ75MW2 155 aa7.98□□□□□ -1.13
CCDC88C-213ENST00000557455 LYZL2Q7Z4W2 148 aa7.98□□□□□ -1.13
CCDC88C-213ENST00000557455 RNF126Q9BV68 326 aa7.98□□□□□ -1.13
CCDC88C-213ENST00000557455 PBDC1Q9BVG4 233 aa7.98□□□□□ -1.13
CCDC88C-213ENST00000557455 HLA-DRB4P13762 266 aa7.97□□□□□ -1.13
CCDC88C-213ENST00000557455 S100A5P33763 92 aa7.97□□□□□ -1.13
CCDC88C-213ENST00000557455 GPX4P36969 197 aaPredicted RBP7.97□□□□□ -1.13
CCDC88C-213ENST00000557455 ID1P41134 155 aa7.97□□□□□ -1.13
CCDC88C-213ENST00000557455 ATP5IP56385 69 aaPredicted RBP7.97□□□□□ -1.13
CCDC88C-213ENST00000557455 SUPT4H1P63272 117 aaKnown RBP7.97□□□□□ -1.13
CCDC88C-213ENST00000557455 SRPXP78539 464 aa7.97□□□□□ -1.13
CCDC88C-213ENST00000557455 C12orf74Q32Q52 190 aa7.97□□□□□ -1.13
CCDC88C-213ENST00000557455 OR8G2PQ6IF36 304 aa7.97□□□□□ -1.13
CCDC88C-213ENST00000557455 OR1S1Q8NH92 325 aa7.97□□□□□ -1.13
CCDC88C-213ENST00000557455 SLC35E1Q96K37 410 aa7.97□□□□□ -1.13
CCDC88C-213ENST00000557455 LINC00052Q96N35 136 aa7.97□□□□□ -1.13
CCDC88C-213ENST00000557455 SLIRPQ9GZT3 109 aaKnown RBP7.97□□□□□ -1.13
CCDC88C-213ENST00000557455 HLA-DRB4X5D2U9 266 aa7.97□□□□□ -1.13
CCDC88C-213ENST00000557455 DNAH2Q9P225 4427 aa7.97□□□□□ -1.13
CCDC88C-213ENST00000557455 HERC2O95714 4834 aa7.97□□□□□ -1.13
CCDC88C-213ENST00000557455 PIGBOS1A0A0B4J2F0 54 aa7.96□□□□□ -1.14
CCDC88C-213ENST00000557455 IGKV3-20P01619 116 aa7.96□□□□□ -1.14
CCDC88C-213ENST00000557455 AMBPP02760 352 aa7.96□□□□□ -1.14
CCDC88C-213ENST00000557455 FABP1P07148 127 aa7.96□□□□□ -1.14
CCDC88C-213ENST00000557455 ZNF90Q03938 601 aa7.96□□□□□ -1.14
CCDC88C-213ENST00000557455 GAMTQ14353 236 aa7.96□□□□□ -1.14
CCDC88C-213ENST00000557455 GDF5OSQ5U4N7 250 aa7.96□□□□□ -1.14
CCDC88C-213ENST00000557455 PPP1R14BQ96C90 147 aa7.96□□□□□ -1.14
CCDC88C-213ENST00000557455 IGKV1D-37A0A075B6S9 117 aa7.95□□□□□ -1.14
CCDC88C-213ENST00000557455 IGHV3OR16-12A0A075B7B8 117 aa7.95□□□□□ -1.14
CCDC88C-213ENST00000557455 FABP12A6NFH5 140 aa7.95□□□□□ -1.14
CCDC88C-213ENST00000557455 SNRPGP15A8MWD9 76 aa7.95□□□□□ -1.14
CCDC88C-213ENST00000557455 PSMB3P49720 205 aa7.95□□□□□ -1.14
CCDC88C-213ENST00000557455 EMP1P54849 157 aa7.95□□□□□ -1.14
CCDC88C-213ENST00000557455 FXYD7P58549 80 aa7.95□□□□□ -1.14
CCDC88C-213ENST00000557455 DEFB1P60022 68 aa7.95□□□□□ -1.14
CCDC88C-213ENST00000557455 LYZP61626 148 aa7.95□□□□□ -1.14
CCDC88C-213ENST00000557455 RAB11AP62491 216 aa7.95□□□□□ -1.14
CCDC88C-213ENST00000557455 C1orf194Q5T5A4 169 aa7.95□□□□□ -1.14
CCDC88C-213ENST00000557455 ZNF705AQ6ZN79 300 aaPredicted RBP7.95□□□□□ -1.14
CCDC88C-213ENST00000557455 FOXI2Q6ZQN5 318 aa7.95□□□□□ -1.14
CCDC88C-213ENST00000557455 COQ8AQ8NI60 647 aa7.95□□□□□ -1.14
CCDC88C-213ENST00000557455 NEU1Q99519 415 aa7.95□□□□□ -1.14
CCDC88C-213ENST00000557455 NDUFAF3Q9BU61 184 aa7.95□□□□□ -1.14
CCDC88C-213ENST00000557455 KRTAP17-1Q9BYP8 105 aa7.95□□□□□ -1.14
CCDC88C-213ENST00000557455 SAV1Q9H4B6 383 aaPredicted RBP7.95□□□□□ -1.14
CCDC88C-213ENST00000557455 DNAH17Q9UFH2 4485 aa7.95□□□□□ -1.14
CCDC88C-213ENST00000557455 DUXBA0A1W2PPF3 345 aa7.94□□□□□ -1.14
CCDC88C-213ENST00000557455 TMEM189A5PLL7 270 aa7.94□□□□□ -1.14
CCDC88C-213ENST00000557455 SMIM9A6NGZ8 99 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms