RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 RNF2Q99496 336 aa8.63□□□□□ -1.03
CCDC88C-212ENST00000556767 TRGV9Q99603 122 aa8.63□□□□□ -1.03
CCDC88C-212ENST00000556767 TMEM231Q9H6L2 316 aa8.63□□□□□ -1.03
CCDC88C-212ENST00000556767 SMAD5-AS1Q9Y6J3 95 aa8.63□□□□□ -1.03
CCDC88C-212ENST00000556767 IGKV1D-37A0A075B6S9 117 aa8.62□□□□□ -1.03
CCDC88C-212ENST00000556767 DEDDO75618 318 aa8.62□□□□□ -1.03
CCDC88C-212ENST00000556767 HNRNPCP07910 306 aaKnown RBP eCLIP8.62□□□□□ -1.03
CCDC88C-212ENST00000556767 TFPI2P48307 235 aa8.62□□□□□ -1.03
CCDC88C-212ENST00000556767 LYZP61626 148 aa8.62□□□□□ -1.03
CCDC88C-212ENST00000556767 SLC38A11Q08AI6 406 aa8.62□□□□□ -1.03
CCDC88C-212ENST00000556767 ARL16Q0P5N6 197 aa8.62□□□□□ -1.03
CCDC88C-212ENST00000556767 TCF24Q7RTU0 167 aa8.62□□□□□ -1.03
CCDC88C-212ENST00000556767 TMEM144Q7Z5S9 345 aa8.62□□□□□ -1.03
CCDC88C-212ENST00000556767 STX12Q86Y82 276 aa8.62□□□□□ -1.03
CCDC88C-212ENST00000556767 THAP8Q8NA92 274 aa8.62□□□□□ -1.03
CCDC88C-212ENST00000556767 PPP1R1CQ8WVI7 109 aa8.62□□□□□ -1.03
CCDC88C-212ENST00000556767 RNF125Q96EQ8 232 aa8.62□□□□□ -1.03
CCDC88C-212ENST00000556767 GRAMD2BQ96HH9 432 aa8.62□□□□□ -1.03
CCDC88C-212ENST00000556767 C11orf1Q9H5F2 150 aa8.62□□□□□ -1.03
CCDC88C-212ENST00000556767 LYRM2Q9NU23 88 aaPredicted RBP8.62□□□□□ -1.03
CCDC88C-212ENST00000556767 RABAC1Q9UI14 185 aa8.62□□□□□ -1.03
CCDC88C-212ENST00000556767 LSM4Q9Y4Z0 139 aaKnown RBP8.62□□□□□ -1.03
CCDC88C-212ENST00000556767 CMYA5Q8N3K9 4069 aa8.62□□□□□ -1.03
CCDC88C-212ENST00000556767 IGKV1OR2-108A0A075B7D4 117 aa8.61□□□□□ -1.03
CCDC88C-212ENST00000556767 IGSF23A1L1A6 192 aa8.61□□□□□ -1.03
CCDC88C-212ENST00000556767 E5RGE8 158 aa8.61□□□□□ -1.03
CCDC88C-212ENST00000556767 DFFBO76075 338 aa8.61□□□□□ -1.03
CCDC88C-212ENST00000556767 CD7P09564 240 aa8.61□□□□□ -1.03
CCDC88C-212ENST00000556767 CXCL3P19876 107 aa8.61□□□□□ -1.03
CCDC88C-212ENST00000556767 SULT1A1P50225 295 aa8.61□□□□□ -1.03
CCDC88C-212ENST00000556767 OXA1LQ15070 435 aa8.61□□□□□ -1.03
CCDC88C-212ENST00000556767 FCN2Q15485 313 aa8.61□□□□□ -1.03
CCDC88C-212ENST00000556767 USF2Q15853 346 aaPredicted RBP8.61□□□□□ -1.03
CCDC88C-212ENST00000556767 LILRB2Q8N423 598 aa8.61□□□□□ -1.03
CCDC88C-212ENST00000556767 GBGT1Q8N5D6 347 aa8.61□□□□□ -1.03
CCDC88C-212ENST00000556767 TMEM252Q8N6L7 170 aa8.61□□□□□ -1.03
CCDC88C-212ENST00000556767 BPIFCQ8NFQ6 507 aa8.61□□□□□ -1.03
CCDC88C-212ENST00000556767 PPP1R14BQ96C90 147 aa8.61□□□□□ -1.03
CCDC88C-212ENST00000556767 NEURL2Q9BR09 285 aa8.61□□□□□ -1.03
CCDC88C-212ENST00000556767 VSIRQ9H7M9 311 aa8.61□□□□□ -1.03
CCDC88C-212ENST00000556767 NPVFQ9HCQ7 196 aa8.61□□□□□ -1.03
CCDC88C-212ENST00000556767 OR5AC2Q9NZP5 309 aa8.61□□□□□ -1.03
CCDC88C-212ENST00000556767 OR4C46A6NHA9 309 aa8.6□□□□□ -1.03
CCDC88C-212ENST00000556767 TSPAN4O14817 238 aa8.6□□□□□ -1.03
CCDC88C-212ENST00000556767 PET100P0DJ07 73 aa8.6□□□□□ -1.03
CCDC88C-212ENST00000556767 GATA2P23769 480 aaPredicted RBP8.6□□□□□ -1.03
CCDC88C-212ENST00000556767 CRYBB3P26998 211 aa8.6□□□□□ -1.03
CCDC88C-212ENST00000556767 P2RY1P47900 373 aa8.6□□□□□ -1.03
CCDC88C-212ENST00000556767 PAFAH1B2P68402 229 aa8.6□□□□□ -1.03
CCDC88C-212ENST00000556767 HBG1P69891 147 aa8.6□□□□□ -1.03
CCDC88C-212ENST00000556767 HBG2P69892 147 aa8.6□□□□□ -1.03
CCDC88C-212ENST00000556767 TEPPQ6URK8 271 aa8.6□□□□□ -1.03
CCDC88C-212ENST00000556767 CYP2G1PQ6ZSU1 146 aa8.6□□□□□ -1.03
CCDC88C-212ENST00000556767 WFDC3Q8IUB2 231 aa8.6□□□□□ -1.03
CCDC88C-212ENST00000556767 Q8N1Y9 231 aa8.6□□□□□ -1.03
CCDC88C-212ENST00000556767 SPAG8Q99932 426 aaPredicted RBP8.6□□□□□ -1.03
CCDC88C-212ENST00000556767 GGACTQ9BVM4 153 aa8.6□□□□□ -1.03
CCDC88C-212ENST00000556767 SLC25A31Q9H0C2 315 aa8.6□□□□□ -1.03
CCDC88C-212ENST00000556767 TUBA4BQ9H853 241 aa8.6□□□□□ -1.03
CCDC88C-212ENST00000556767 PFDN2Q9UHV9 154 aa8.6□□□□□ -1.03
CCDC88C-212ENST00000556767 FNDC10F2Z333 226 aa8.59□□□□□ -1.03
CCDC88C-212ENST00000556767 H0YIZ8 118 aa8.59□□□□□ -1.03
CCDC88C-212ENST00000556767 DNASE2O00115 360 aaPredicted RBP8.59□□□□□ -1.03
CCDC88C-212ENST00000556767 MPC2O95563 127 aa8.59□□□□□ -1.03
CCDC88C-212ENST00000556767 CFDP00746 253 aaPredicted RBP8.59□□□□□ -1.03
CCDC88C-212ENST00000556767 CD5P06127 495 aa8.59□□□□□ -1.03
CCDC88C-212ENST00000556767 ORM2P19652 201 aa8.59□□□□□ -1.03
CCDC88C-212ENST00000556767 S100A11P31949 105 aa8.59□□□□□ -1.03
CCDC88C-212ENST00000556767 EIF2B2P49770 351 aaKnown RBP8.59□□□□□ -1.03
CCDC88C-212ENST00000556767 TMEM182Q6ZP80 229 aaPredicted RBP8.59□□□□□ -1.03
CCDC88C-212ENST00000556767 OR11H7Q8NGC8 314 aa8.59□□□□□ -1.03
CCDC88C-212ENST00000556767 OR1B1Q8NGR6 318 aa8.59□□□□□ -1.03
CCDC88C-212ENST00000556767 UQCC1Q9NVA1 299 aa8.59□□□□□ -1.03
CCDC88C-212ENST00000556767 DOK5Q9P104 306 aa8.59□□□□□ -1.03
CCDC88C-212ENST00000556767 UBQLN2Q9UHD9 624 aa8.59□□□□□ -1.03
CCDC88C-212ENST00000556767 UBE2L5PA0A1B0GUS4 154 aa8.58□□□□□ -1.04
CCDC88C-212ENST00000556767 OR11H12B2RN74 326 aa8.58□□□□□ -1.04
CCDC88C-212ENST00000556767 IGHV4-30-4P0DP06 118 aa8.58□□□□□ -1.04
CCDC88C-212ENST00000556767 NUP62P37198 522 aaPredicted RBP8.58□□□□□ -1.04
CCDC88C-212ENST00000556767 EWSR1Q01844 656 aaKnown RBP eCLIP8.58□□□□□ -1.04
CCDC88C-212ENST00000556767 NHLH2Q02577 135 aa8.58□□□□□ -1.04
CCDC88C-212ENST00000556767 BAXQ07812 192 aa8.58□□□□□ -1.04
CCDC88C-212ENST00000556767 RAB31Q13636 194 aa8.58□□□□□ -1.04
CCDC88C-212ENST00000556767 FAM90A2PQ658T7 463 aa8.58□□□□□ -1.04
CCDC88C-212ENST00000556767 DEFB125Q8N687 156 aa8.58□□□□□ -1.04
CCDC88C-212ENST00000556767 STXBP6Q8NFX7 210 aa8.58□□□□□ -1.04
CCDC88C-212ENST00000556767 THAP6Q8TBB0 222 aa8.58□□□□□ -1.04
CCDC88C-212ENST00000556767 ASCL2Q99929 193 aa8.58□□□□□ -1.04
CCDC88C-212ENST00000556767 RNF126Q9BV68 326 aa8.58□□□□□ -1.04
CCDC88C-212ENST00000556767 TMEM147Q9BVK8 224 aa8.58□□□□□ -1.04
CCDC88C-212ENST00000556767 WFDC10AQ9H1F0 79 aa8.58□□□□□ -1.04
CCDC88C-212ENST00000556767 MBD2Q9UBB5 411 aa8.58□□□□□ -1.04
CCDC88C-212ENST00000556767 U3KQE9 123 aa8.58□□□□□ -1.04
CCDC88C-212ENST00000556767 HELTA6NFD8 242 aa8.57□□□□□ -1.04
CCDC88C-212ENST00000556767 AGPAT2O15120 278 aa8.57□□□□□ -1.04
CCDC88C-212ENST00000556767 OR5G3P0C626 314 aa8.57□□□□□ -1.04
CCDC88C-212ENST00000556767 FRMD6-AS1P0C7T7 363 aa8.57□□□□□ -1.04
CCDC88C-212ENST00000556767 LINC00869P0C866 280 aa8.57□□□□□ -1.04
CCDC88C-212ENST00000556767 SELENOTP62341 195 aa8.57□□□□□ -1.04
CCDC88C-212ENST00000556767 ATP6V1FQ16864 119 aa8.57□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms