RNA–Protein interactions for RNA: ENST00000554467.5

SHMT2-212, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 3,416 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-212ENST00000554467 WT1-ASQ06250 92 aa9.38□□□□□ -0.91
SHMT2-212ENST00000554467 FBLN7Q53RD9 439 aa9.38□□□□□ -0.91
SHMT2-212ENST00000554467 SPATA31B1PQ5VZV4 182 aa9.38□□□□□ -0.91
SHMT2-212ENST00000554467 RPEQ96AT9 228 aa9.38□□□□□ -0.91
SHMT2-212ENST00000554467 SSBP3Q9BWW4 388 aaPredicted RBP9.38□□□□□ -0.91
SHMT2-212ENST00000554467 CSTL1Q9H114 145 aa9.38□□□□□ -0.91
SHMT2-212ENST00000554467 GPR6P46095 362 aaPredicted RBP9.38□□□□□ -0.91
SHMT2-212ENST00000554467 PRRX1P54821 245 aa9.38□□□□□ -0.91
SHMT2-212ENST00000554467 HCP5Q6MZN7 132 aa9.38□□□□□ -0.91
SHMT2-212ENST00000554467 KCNIP4Q6PIL6 250 aa9.38□□□□□ -0.91
SHMT2-212ENST00000554467 Q6ZN92 141 aa9.38□□□□□ -0.91
SHMT2-212ENST00000554467 DTX2Q86UW9 622 aa9.38□□□□□ -0.91
SHMT2-212ENST00000554467 PDPNQ86YL7 162 aa9.38□□□□□ -0.91
SHMT2-212ENST00000554467 OR2T6Q8NHC8 308 aa9.38□□□□□ -0.91
SHMT2-212ENST00000554467 ZNF596Q8TC21 504 aa9.38□□□□□ -0.91
SHMT2-212ENST00000554467 FAM103A1Q9BTL3 118 aaKnown RBP9.38□□□□□ -0.91
SHMT2-212ENST00000554467 CHODLQ9H9P2 273 aa9.38□□□□□ -0.91
SHMT2-212ENST00000554467 PTPN13Q12923 2485 aa9.38□□□□□ -0.91
SHMT2-212ENST00000554467 FBN2P35556 2912 aa9.38□□□□□ -0.91
SHMT2-212ENST00000554467 IGKV1OR2-108A0A075B7D4 117 aa9.38□□□□□ -0.91
SHMT2-212ENST00000554467 RNASE2P10153 161 aaKnown RBP9.37□□□□□ -0.91
SHMT2-212ENST00000554467 SSBP2P81877 361 aaPredicted RBP9.37□□□□□ -0.91
SHMT2-212ENST00000554467 FOXL1Q12952 345 aa9.37□□□□□ -0.91
SHMT2-212ENST00000554467 SGMS2Q8NHU3 365 aa9.37□□□□□ -0.91
SHMT2-212ENST00000554467 NEU4Q8WWR8 484 aaPredicted RBP9.37□□□□□ -0.91
SHMT2-212ENST00000554467 NPVFQ9HCQ7 196 aa9.37□□□□□ -0.91
SHMT2-212ENST00000554467 NDUFA4L2Q9NRX3 87 aa9.37□□□□□ -0.91
SHMT2-212ENST00000554467 CHD6Q8TD26 2715 aa9.37□□□□□ -0.91
SHMT2-212ENST00000554467 KRTDAPP60985 99 aa9.37□□□□□ -0.91
SHMT2-212ENST00000554467 TNXAQ16473 311 aa9.37□□□□□ -0.91
SHMT2-212ENST00000554467 STPG3Q8N7X2 389 aa9.37□□□□□ -0.91
SHMT2-212ENST00000554467 OR1L8Q8NGR8 309 aa9.37□□□□□ -0.91
SHMT2-212ENST00000554467 UHRF2Q96PU4 802 aa9.37□□□□□ -0.91
SHMT2-212ENST00000554467 ZNF257Q9Y2Q1 563 aa9.37□□□□□ -0.91
SHMT2-212ENST00000554467 CHTOPQ9Y3Y2 248 aaKnown RBP9.37□□□□□ -0.91
SHMT2-212ENST00000554467 DIRC3C9JPN6 131 aa9.37□□□□□ -0.91
SHMT2-212ENST00000554467 USF1P22415 310 aaPredicted RBP9.37□□□□□ -0.91
SHMT2-212ENST00000554467 ZNF137PP52743 207 aa9.37□□□□□ -0.91
SHMT2-212ENST00000554467 MRGPRG-AS1Q2M3A8 158 aa9.37□□□□□ -0.91
SHMT2-212ENST00000554467 TEPPQ6URK8 271 aa9.37□□□□□ -0.91
SHMT2-212ENST00000554467 OR4B1Q8NGF8 309 aa9.37□□□□□ -0.91
SHMT2-212ENST00000554467 OR5B3Q8NH48 314 aa9.37□□□□□ -0.91
SHMT2-212ENST00000554467 FBXL15Q9H469 300 aa9.37□□□□□ -0.91
SHMT2-212ENST00000554467 UQCR10Q9UDW1 63 aa9.37□□□□□ -0.91
SHMT2-212ENST00000554467 TMEM238C9JI98 176 aa9.36□□□□□ -0.91
SHMT2-212ENST00000554467 RUSC1-AS1Q66K80 236 aa9.36□□□□□ -0.91
SHMT2-212ENST00000554467 ZNF738Q8NE65 137 aa9.36□□□□□ -0.91
SHMT2-212ENST00000554467 TMEM167AQ8TBQ9 72 aa9.36□□□□□ -0.91
SHMT2-212ENST00000554467 BTF3L4Q96K17 158 aa9.36□□□□□ -0.91
SHMT2-212ENST00000554467 WNT10AQ9GZT5 417 aa9.36□□□□□ -0.91
SHMT2-212ENST00000554467 SEPSECSQ9HD40 501 aaKnown RBP9.36□□□□□ -0.91
SHMT2-212ENST00000554467 TRBV20OR9-2A0A075B6H5 130 aa9.36□□□□□ -0.91
SHMT2-212ENST00000554467 A0A1W2PPI3 338 aa9.36□□□□□ -0.91
SHMT2-212ENST00000554467 FCN1O00602 326 aa9.36□□□□□ -0.91
SHMT2-212ENST00000554467 TIMM23O14925 209 aa9.36□□□□□ -0.91
SHMT2-212ENST00000554467 VENTXO95231 258 aa9.36□□□□□ -0.91
SHMT2-212ENST00000554467 GPX1P07203 203 aa9.36□□□□□ -0.91
SHMT2-212ENST00000554467 AREGP15514 252 aa9.36□□□□□ -0.91
SHMT2-212ENST00000554467 VMA21Q3ZAQ7 101 aa9.36□□□□□ -0.91
SHMT2-212ENST00000554467 C8orf31Q8N9H6 132 aa9.36□□□□□ -0.91
SHMT2-212ENST00000554467 OR4C5Q8NGB2 326 aa9.36□□□□□ -0.91
SHMT2-212ENST00000554467 TP73-AS1Q9UF72 201 aa9.36□□□□□ -0.91
SHMT2-212ENST00000554467 LSM4Q9Y4Z0 139 aaKnown RBP9.36□□□□□ -0.91
SHMT2-212ENST00000554467 ABCA2Q9BZC7 2435 aa9.36□□□□□ -0.91
SHMT2-212ENST00000554467 SCO2A0A1W2PP80 73 aa9.35□□□□□ -0.91
SHMT2-212ENST00000554467 CRISP2P16562 243 aa9.35□□□□□ -0.91
SHMT2-212ENST00000554467 TXN2Q99757 166 aa9.35□□□□□ -0.91
SHMT2-212ENST00000554467 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP9.35□□□□□ -0.912e-7■■■■□ 25.4
SHMT2-212ENST00000554467 FOXH1O75593 365 aa9.35□□□□□ -0.91
SHMT2-212ENST00000554467 TSPOP30536 169 aa9.35□□□□□ -0.91
SHMT2-212ENST00000554467 HNRNPA3P51991 378 aaKnown RBP9.35□□□□□ -0.91
SHMT2-212ENST00000554467 SUMO1P63165 101 aaKnown RBP9.35□□□□□ -0.91
SHMT2-212ENST00000554467 SLC35B1P78383 322 aa9.35□□□□□ -0.91
SHMT2-212ENST00000554467 LY6G5BQ8NDX9 201 aa9.35□□□□□ -0.91
SHMT2-212ENST00000554467 SVIPQ8NHG7 77 aa9.35□□□□□ -0.91
SHMT2-212ENST00000554467 BBC3Q96PG8 261 aaPredicted RBP9.35□□□□□ -0.91
SHMT2-212ENST00000554467 RNF2Q99496 336 aa9.35□□□□□ -0.91
SHMT2-212ENST00000554467 VPS25Q9BRG1 176 aa9.35□□□□□ -0.91
SHMT2-212ENST00000554467 BPESC1Q9GZL8 116 aa9.35□□□□□ -0.91
SHMT2-212ENST00000554467 MDFIC2A0A1B0GVS7 189 aa9.35□□□□□ -0.91
SHMT2-212ENST00000554467 F6UZH7 168 aa9.35□□□□□ -0.91
SHMT2-212ENST00000554467 SLC17A3O00476 420 aa9.35□□□□□ -0.91
SHMT2-212ENST00000554467 MC5RP33032 325 aa9.35□□□□□ -0.91
SHMT2-212ENST00000554467 OPRK1P41145 380 aa9.35□□□□□ -0.91
SHMT2-212ENST00000554467 ERHP84090 104 aaKnown RBP9.35□□□□□ -0.91
SHMT2-212ENST00000554467 PLGLAQ15195 96 aa9.35□□□□□ -0.91
SHMT2-212ENST00000554467 ATOH7Q8N100 152 aa9.35□□□□□ -0.91
SHMT2-212ENST00000554467 CST9LQ9H4G1 147 aa9.35□□□□□ -0.91
SHMT2-212ENST00000554467 FNDC4Q9H6D8 234 aaPredicted RBP9.35□□□□□ -0.91
SHMT2-212ENST00000554467 MRPL36Q9P0J6 103 aaKnown RBP9.35□□□□□ -0.91
SHMT2-212ENST00000554467 ANKRD17O75179 2603 aaKnown RBP9.35□□□□□ -0.91
SHMT2-212ENST00000554467 UBR5O95071 2799 aaPredicted RBP9.35□□□□□ -0.91
SHMT2-212ENST00000554467 PSG5Q15238 335 aa9.34□□□□□ -0.91
SHMT2-212ENST00000554467 OCIAD2Q56VL3 154 aa9.34□□□□□ -0.91
SHMT2-212ENST00000554467 ASPHD1Q5U4P2 390 aa9.34□□□□□ -0.91
SHMT2-212ENST00000554467 C8orf46Q8TAG6 207 aa9.34□□□□□ -0.91
SHMT2-212ENST00000554467 RCHY1Q96PM5 261 aa9.34□□□□□ -0.91
SHMT2-212ENST00000554467 MRPL18Q9H0U6 180 aaKnown RBP9.34□□□□□ -0.91
SHMT2-212ENST00000554467 TBL2Q9Y4P3 447 aaKnown RBP9.34□□□□□ -0.91
SHMT2-212ENST00000554467 PRSS47A8MTI9 375 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms