RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 SNRPD3P62318 126 aaKnown RBP5.5□□□□□ -1.53
NEK3-201ENST00000550331 SSBP1Q04837 148 aaKnown RBP5.5□□□□□ -1.53
NEK3-201ENST00000550331 DHRS2Q13268 280 aa5.5□□□□□ -1.53
NEK3-201ENST00000550331 SURF2Q15527 256 aaPredicted RBP5.5□□□□□ -1.53
NEK3-201ENST00000550331 SCGB2B2Q4G0G5 96 aa5.5□□□□□ -1.53
NEK3-201ENST00000550331 RNASE12Q5GAN4 147 aaKnown RBP5.5□□□□□ -1.53
NEK3-201ENST00000550331 PSMG4Q5JS54 123 aa5.5□□□□□ -1.53
NEK3-201ENST00000550331 ACTL10Q5JWF8 245 aa5.5□□□□□ -1.53
NEK3-201ENST00000550331 PRSS54Q6PEW0 395 aa5.5□□□□□ -1.53
NEK3-201ENST00000550331 C16orf54Q6UWD8 224 aa5.5□□□□□ -1.53
NEK3-201ENST00000550331 Q6ZRM9 215 aa5.5□□□□□ -1.53
NEK3-201ENST00000550331 LINC00336Q6ZUF6 198 aa5.5□□□□□ -1.53
NEK3-201ENST00000550331 SLC24A4Q8NFF2 622 aa5.5□□□□□ -1.53
NEK3-201ENST00000550331 OR4D10Q8NGI6 311 aa5.5□□□□□ -1.53
NEK3-201ENST00000550331 MARCH1Q8TCQ1 289 aa5.5□□□□□ -1.53
NEK3-201ENST00000550331 RBPMSQ93062 196 aaKnown RBP5.5□□□□□ -1.53
NEK3-201ENST00000550331 RAB40CQ96S21 281 aa5.5□□□□□ -1.53
NEK3-201ENST00000550331 C1QTNF4Q9BXJ3 329 aa5.5□□□□□ -1.53
NEK3-201ENST00000550331 NAA60Q9H7X0 242 aa5.5□□□□□ -1.53
NEK3-201ENST00000550331 HEYLQ9NQ87 328 aaPredicted RBP5.5□□□□□ -1.53
NEK3-201ENST00000550331 EXTL2Q9UBQ6 330 aa5.5□□□□□ -1.53
NEK3-201ENST00000550331 TEX13DA0A0J9YY54 714 aaPredicted RBP5.49□□□□□ -1.53
NEK3-201ENST00000550331 RAB3DO95716 219 aa5.49□□□□□ -1.53
NEK3-201ENST00000550331 IL4P05112 153 aa5.49□□□□□ -1.53
NEK3-201ENST00000550331 OR5AC1P0C628 307 aa5.49□□□□□ -1.53
NEK3-201ENST00000550331 ZNF182P17025 639 aaPredicted RBP5.49□□□□□ -1.53
NEK3-201ENST00000550331 OR10J1P30954 320 aa5.49□□□□□ -1.53
NEK3-201ENST00000550331 MRPS10P82664 201 aaKnown RBP5.49□□□□□ -1.53
NEK3-201ENST00000550331 DHODHQ02127 395 aa5.49□□□□□ -1.53
NEK3-201ENST00000550331 MEF2DQ14814 521 aa5.49□□□□□ -1.53
NEK3-201ENST00000550331 USF2Q15853 346 aaPredicted RBP5.49□□□□□ -1.53
NEK3-201ENST00000550331 ETFRF1Q6IPR1 90 aa5.49□□□□□ -1.53
NEK3-201ENST00000550331 STEAP1BQ6NZ63 245 aa5.49□□□□□ -1.53
NEK3-201ENST00000550331 NOXA1Q86UR1 476 aa5.49□□□□□ -1.53
NEK3-201ENST00000550331 LHFPL5Q8TAF8 219 aa5.49□□□□□ -1.53
NEK3-201ENST00000550331 GLYATL2Q8WU03 294 aa5.49□□□□□ -1.53
NEK3-201ENST00000550331 NRN1Q9NPD7 142 aa5.49□□□□□ -1.53
NEK3-201ENST00000550331 CLEC5AQ9NY25 188 aa5.49□□□□□ -1.53
NEK3-201ENST00000550331 C14orf166Q9Y224 244 aaKnown RBP5.49□□□□□ -1.53
NEK3-201ENST00000550331 DEFB131BA0A096LNP1 70 aa5.48□□□□□ -1.53
NEK3-201ENST00000550331 A0A1B0GVY2 172 aa5.48□□□□□ -1.53
NEK3-201ENST00000550331 CEBPZOSA8MTT3 80 aa5.48□□□□□ -1.53
NEK3-201ENST00000550331 FAM90A26D6RGX4 464 aa5.48□□□□□ -1.53
NEK3-201ENST00000550331 H3BMM0 161 aa5.48□□□□□ -1.53
NEK3-201ENST00000550331 GABARAPH6UMI1 98 aa5.48□□□□□ -1.53
NEK3-201ENST00000550331 EREGO14944 169 aa5.48□□□□□ -1.53
NEK3-201ENST00000550331 BUB3O43684 328 aa5.48□□□□□ -1.53
NEK3-201ENST00000550331 TOMM40O96008 361 aa5.48□□□□□ -1.53
NEK3-201ENST00000550331 P0DMU3 169 aa5.48□□□□□ -1.53
NEK3-201ENST00000550331 FAM231AP0DMU4 169 aa5.48□□□□□ -1.53
NEK3-201ENST00000550331 FAM231CP0DMU5 169 aa5.48□□□□□ -1.53
NEK3-201ENST00000550331 NPY1RP25929 384 aa5.48□□□□□ -1.53
NEK3-201ENST00000550331 NUP62P37198 522 aaPredicted RBP5.48□□□□□ -1.53
NEK3-201ENST00000550331 CTF1Q16619 201 aa5.48□□□□□ -1.53
NEK3-201ENST00000550331 C12orf74Q32Q52 190 aa5.48□□□□□ -1.53
NEK3-201ENST00000550331 NMSQ5H8A3 153 aa5.48□□□□□ -1.53
NEK3-201ENST00000550331 GPR107Q5VW38 600 aa5.48□□□□□ -1.53
NEK3-201ENST00000550331 TMEM268Q5VZI3 342 aa5.48□□□□□ -1.53
NEK3-201ENST00000550331 SIGLEC15Q6ZMC9 328 aa5.48□□□□□ -1.53
NEK3-201ENST00000550331 SELENOHQ8IZQ5 122 aaKnown RBP5.48□□□□□ -1.53
NEK3-201ENST00000550331 TMEM170AQ8WVE7 144 aa5.48□□□□□ -1.53
NEK3-201ENST00000550331 IL22RA2Q969J5 263 aa5.48□□□□□ -1.53
NEK3-201ENST00000550331 GPR146Q96CH1 333 aa5.48□□□□□ -1.53
NEK3-201ENST00000550331 RTBDNQ9BSG5 229 aaPredicted RBP5.48□□□□□ -1.53
NEK3-201ENST00000550331 CACNG5Q9UF02 275 aa5.48□□□□□ -1.53
NEK3-201ENST00000550331 CELA1Q9UNI1 258 aa5.48□□□□□ -1.53
NEK3-201ENST00000550331 TMEM56-RWDD3S4R434 201 aa5.48□□□□□ -1.53
NEK3-201ENST00000550331 TMEM238LA0A1B0GVL6 79 aa5.47□□□□□ -1.53
NEK3-201ENST00000550331 TMEM189A5PLL7 270 aa5.47□□□□□ -1.53
NEK3-201ENST00000550331 CRYM-AS1A6NIL9 109 aa5.47□□□□□ -1.53
NEK3-201ENST00000550331 DISC1C4P0D8 188 aa5.47□□□□□ -1.53
NEK3-201ENST00000550331 RD3LP0DJH9 198 aa5.47□□□□□ -1.53
NEK3-201ENST00000550331 SULT1A3P0DMM9 295 aa5.47□□□□□ -1.53
NEK3-201ENST00000550331 SULT1A4P0DMN0 295 aa5.47□□□□□ -1.53
NEK3-201ENST00000550331 HLA-DRB4P13762 266 aa5.47□□□□□ -1.53
NEK3-201ENST00000550331 NKX2-1P43699 371 aaPredicted RBP5.47□□□□□ -1.53
NEK3-201ENST00000550331 ID3Q02535 119 aa5.47□□□□□ -1.53
NEK3-201ENST00000550331 OR8G2PQ6IF36 304 aa5.47□□□□□ -1.53
NEK3-201ENST00000550331 FAAP20Q6NZ36 180 aa5.47□□□□□ -1.53
NEK3-201ENST00000550331 ZNF705AQ6ZN79 300 aaPredicted RBP5.47□□□□□ -1.53
NEK3-201ENST00000550331 POM121L12Q8N7R1 296 aa5.47□□□□□ -1.53
NEK3-201ENST00000550331 SMIM4Q8WVI0 70 aa5.47□□□□□ -1.53
NEK3-201ENST00000550331 NPIPB3Q92617 1050 aa5.47□□□□□ -1.53
NEK3-201ENST00000550331 RNF125Q96EQ8 232 aa5.47□□□□□ -1.53
NEK3-201ENST00000550331 ACY3Q96HD9 319 aa5.47□□□□□ -1.53
NEK3-201ENST00000550331 NEU1Q99519 415 aa5.47□□□□□ -1.53
NEK3-201ENST00000550331 PRRT1Q99946 306 aa5.47□□□□□ -1.53
NEK3-201ENST00000550331 NDUFAF3Q9BU61 184 aa5.47□□□□□ -1.53
NEK3-201ENST00000550331 XCL2Q9UBD3 114 aa5.47□□□□□ -1.53
NEK3-201ENST00000550331 PFDN2Q9UHV9 154 aa5.47□□□□□ -1.53
NEK3-201ENST00000550331 U3KQ87 197 aa5.47□□□□□ -1.53
NEK3-201ENST00000550331 HLA-DRB4X5D2U9 266 aa5.47□□□□□ -1.53
NEK3-201ENST00000550331 SMIM9A6NGZ8 99 aa5.46□□□□□ -1.54
NEK3-201ENST00000550331 ZNF705FA8MVS1 300 aaPredicted RBP5.46□□□□□ -1.54
NEK3-201ENST00000550331 CTDSPLO15194 276 aa5.46□□□□□ -1.54
NEK3-201ENST00000550331 NXPH3O95157 252 aa5.46□□□□□ -1.54
NEK3-201ENST00000550331 IFNA10P01566 189 aa5.46□□□□□ -1.54
NEK3-201ENST00000550331 ZNF705DP0CH99 300 aaPredicted RBP5.46□□□□□ -1.54
NEK3-201ENST00000550331 ZNF705BP0CI00 300 aaPredicted RBP5.46□□□□□ -1.54
NEK3-201ENST00000550331 SPART-AS1P0CW21 52 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms