RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, human

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHMP1A-205	ENST00000548650	MCUB	Q9NWR8	336 aa		12.59	□□□□□ -0.39
CHMP1A-205	ENST00000548650	RSL24D1	Q9UHA3	163 aa	Known RBP	12.59	□□□□□ -0.39
CHMP1A-205	ENST00000548650	SHPK	Q9UHJ6	478 aa		12.59	□□□□□ -0.39
CHMP1A-205	ENST00000548650	SCP2D1	Q9UJQ7	156 aa		12.59	□□□□□ -0.39
CHMP1A-205	ENST00000548650	KCNIP3	Q9Y2W7	256 aa		12.59	□□□□□ -0.39
CHMP1A-205	ENST00000548650	HECTD4	Q9Y4D8	3996 aa		12.59	□□□□□ -0.39
CHMP1A-205	ENST00000548650	ELOA3C	A0A087WX78	387 aa	Predicted RBP	12.58	□□□□□ -0.4
CHMP1A-205	ENST00000548650	C11orf94	C9JXX5	98 aa		12.58	□□□□□ -0.4
CHMP1A-205	ENST00000548650	IFNA10	P01566	189 aa		12.58	□□□□□ -0.4
CHMP1A-205	ENST00000548650	RD3L	P0DJH9	198 aa		12.58	□□□□□ -0.4
CHMP1A-205	ENST00000548650	PSG1	P11464	419 aa		12.58	□□□□□ -0.4
CHMP1A-205	ENST00000548650	HLA-DMB	P28068	263 aa		12.58	□□□□□ -0.4
CHMP1A-205	ENST00000548650	SIGLEC15	Q6ZMC9	328 aa		12.58	□□□□□ -0.4
CHMP1A-205	ENST00000548650	LYZL2	Q7Z4W2	148 aa		12.58	□□□□□ -0.4
CHMP1A-205	ENST00000548650	SOST	Q9BQB4	213 aa		12.58	□□□□□ -0.4
CHMP1A-205	ENST00000548650	RBKS	Q9H477	322 aa		12.58	□□□□□ -0.4
CHMP1A-205	ENST00000548650	TBC1D24	Q9ULP9	559 aa		12.58	□□□□□ -0.4
CHMP1A-205	ENST00000548650	APLN	Q9ULZ1	77 aa		12.58	□□□□□ -0.4
CHMP1A-205	ENST00000548650		U3KQ87	197 aa		12.58	□□□□□ -0.4
CHMP1A-205	ENST00000548650	AKR1C4	P17516	323 aa		12.57	□□□□□ -0.4
CHMP1A-205	ENST00000548650		Q6ZTC4	211 aa		12.57	□□□□□ -0.4
CHMP1A-205	ENST00000548650	LGI3	Q8N145	548 aa		12.57	□□□□□ -0.4
CHMP1A-205	ENST00000548650	OR51G1	Q8NGK1	321 aa		12.57	□□□□□ -0.4
CHMP1A-205	ENST00000548650	RNF125	Q96EQ8	232 aa		12.57	□□□□□ -0.4
CHMP1A-205	ENST00000548650	SCGB3A2	Q96PL1	93 aa		12.57	□□□□□ -0.4
CHMP1A-205	ENST00000548650	RBM38	Q9H0Z9	239 aa	Known RBP	12.57	□□□□□ -0.4
CHMP1A-205	ENST00000548650	SEPSECS	Q9HD40	501 aa	Known RBP	12.57	□□□□□ -0.4
CHMP1A-205	ENST00000548650	IGKV1D-37	A0A075B6S9	117 aa		12.56	□□□□□ -0.4
CHMP1A-205	ENST00000548650	IGLL5	B9A064	214 aa		12.56	□□□□□ -0.4
CHMP1A-205	ENST00000548650	TNFSF8	P32971	234 aa		12.56	□□□□□ -0.4
CHMP1A-205	ENST00000548650	SNRPD3	P62318	126 aa	Known RBP	12.56	□□□□□ -0.4
CHMP1A-205	ENST00000548650	SRPX	P78539	464 aa		12.56	□□□□□ -0.4
CHMP1A-205	ENST00000548650	TRIM63	Q969Q1	353 aa		12.56	□□□□□ -0.4
CHMP1A-205	ENST00000548650	CELA1	Q9UNI1	258 aa		12.56	□□□□□ -0.4
CHMP1A-205	ENST00000548650		H3BMM0	161 aa		12.55	□□□□□ -0.4
CHMP1A-205	ENST00000548650	OR8G2P	Q6IF36	304 aa		12.55	□□□□□ -0.4
CHMP1A-205	ENST00000548650	TRAV10	A0A0B4J240	114 aa		12.54	□□□□□ -0.4
CHMP1A-205	ENST00000548650	FABP12	A6NFH5	140 aa		12.54	□□□□□ -0.4
CHMP1A-205	ENST00000548650	ANXA3	P12429	323 aa		12.54	□□□□□ -0.4
CHMP1A-205	ENST00000548650	HLA-DRB4	P13762	266 aa		12.54	□□□□□ -0.4
CHMP1A-205	ENST00000548650	NUP62	P37198	522 aa	Predicted RBP	12.54	□□□□□ -0.4
CHMP1A-205	ENST00000548650	KLF9	Q13886	244 aa	Predicted RBP	12.54	□□□□□ -0.4
CHMP1A-205	ENST00000548650	PBDC1	Q9BVG4	233 aa		12.54	□□□□□ -0.4
CHMP1A-205	ENST00000548650	C1QTNF4	Q9BXJ3	329 aa		12.54	□□□□□ -0.4
CHMP1A-205	ENST00000548650	HLA-DRB4	X5D2U9	266 aa		12.54	□□□□□ -0.4
CHMP1A-205	ENST00000548650	ZFP92	A6NM28	416 aa		12.53	□□□□□ -0.4
CHMP1A-205	ENST00000548650	PITX3	O75364	302 aa		12.53	□□□□□ -0.4
CHMP1A-205	ENST00000548650	ATP5I	P56385	69 aa	Predicted RBP	12.53	□□□□□ -0.4
CHMP1A-205	ENST00000548650	ZNF90	Q03938	601 aa		12.53	□□□□□ -0.4
CHMP1A-205	ENST00000548650	GAMT	Q14353	236 aa		12.53	□□□□□ -0.4
CHMP1A-205	ENST00000548650	OR1S1	Q8NH92	325 aa		12.53	□□□□□ -0.4
CHMP1A-205	ENST00000548650	SLC35E1	Q96K37	410 aa		12.53	□□□□□ -0.4
CHMP1A-205	ENST00000548650	XCL2	Q9UBD3	114 aa		12.53	□□□□□ -0.4
CHMP1A-205	ENST00000548650	HERC2	O95714	4834 aa		12.52	□□□□□ -0.4
CHMP1A-205	ENST00000548650	IGHV4-4	A0A075B6R2	117 aa		12.52	□□□□□ -0.41
CHMP1A-205	ENST00000548650	DUXB	A0A1W2PPF3	345 aa		12.52	□□□□□ -0.41
CHMP1A-205	ENST00000548650	SOCS3	O14543	225 aa		12.52	□□□□□ -0.41
CHMP1A-205	ENST00000548650	GPX4	P36969	197 aa	Predicted RBP	12.52	□□□□□ -0.41
CHMP1A-205	ENST00000548650	NKX2-1	P43699	371 aa	Predicted RBP	12.52	□□□□□ -0.41
CHMP1A-205	ENST00000548650	DEFB1	P60022	68 aa		12.52	□□□□□ -0.41
CHMP1A-205	ENST00000548650	NUTF2	P61970	127 aa	Known RBP	12.52	□□□□□ -0.41
CHMP1A-205	ENST00000548650	GDF5OS	Q5U4N7	250 aa		12.52	□□□□□ -0.41
CHMP1A-205	ENST00000548650	TMED4	Q7Z7H5	227 aa		12.52	□□□□□ -0.41
CHMP1A-205	ENST00000548650	WDR12	Q9GZL7	423 aa	Known RBP	12.52	□□□□□ -0.41
CHMP1A-205	ENST00000548650		V9GYH0	126 aa		12.52	□□□□□ -0.41
CHMP1A-205	ENST00000548650	ZNF701	M0R085	212 aa	Predicted RBP	12.51	□□□□□ -0.41
CHMP1A-205	ENST00000548650	AMBP	P02760	352 aa		12.51	□□□□□ -0.41
CHMP1A-205	ENST00000548650	FAU	P35544	74 aa	Known RBP	12.51	□□□□□ -0.41
CHMP1A-205	ENST00000548650	C12orf74	Q32Q52	190 aa		12.51	□□□□□ -0.41
CHMP1A-205	ENST00000548650	ZNF705A	Q6ZN79	300 aa	Predicted RBP	12.51	□□□□□ -0.41
CHMP1A-205	ENST00000548650	IGKV1OR2-108	A0A075B7D4	117 aa		12.5	□□□□□ -0.41
CHMP1A-205	ENST00000548650	PIGBOS1	A0A0B4J2F0	54 aa		12.5	□□□□□ -0.41
CHMP1A-205	ENST00000548650	IAPP	P10997	89 aa		12.5	□□□□□ -0.41
CHMP1A-205	ENST00000548650	S100A5	P33763	92 aa		12.5	□□□□□ -0.41
CHMP1A-205	ENST00000548650	LYZ	P61626	148 aa		12.5	□□□□□ -0.41
CHMP1A-205	ENST00000548650	TMEM128	Q5BJH2	165 aa		12.5	□□□□□ -0.41
CHMP1A-205	ENST00000548650	ZNF767P	Q75MW2	155 aa		12.5	□□□□□ -0.41
CHMP1A-205	ENST00000548650	LRTM2	Q8N967	370 aa		12.5	□□□□□ -0.41
CHMP1A-205	ENST00000548650	RNF126	Q9BV68	326 aa		12.5	□□□□□ -0.41
CHMP1A-205	ENST00000548650	SAV1	Q9H4B6	383 aa	Predicted RBP	12.5	□□□□□ -0.41
CHMP1A-205	ENST00000548650	PFDN2	Q9UHV9	154 aa		12.5	□□□□□ -0.41
CHMP1A-205	ENST00000548650	ZNF705F	A8MVS1	300 aa	Predicted RBP	12.49	□□□□□ -0.41
CHMP1A-205	ENST00000548650	ZNF705D	P0CH99	300 aa	Predicted RBP	12.49	□□□□□ -0.41
CHMP1A-205	ENST00000548650	ZNF705B	P0CI00	300 aa	Predicted RBP	12.49	□□□□□ -0.41
CHMP1A-205	ENST00000548650	VAMP1	P23763	118 aa		12.49	□□□□□ -0.41
CHMP1A-205	ENST00000548650	PSMB3	P49720	205 aa		12.49	□□□□□ -0.41
CHMP1A-205	ENST00000548650	OR2F1	Q13607	317 aa		12.49	□□□□□ -0.41
CHMP1A-205	ENST00000548650	ZNF79	Q15937	498 aa		12.49	□□□□□ -0.41
CHMP1A-205	ENST00000548650	C1orf194	Q5T5A4	169 aa		12.49	□□□□□ -0.41
CHMP1A-205	ENST00000548650	FOXI2	Q6ZQN5	318 aa		12.49	□□□□□ -0.41
CHMP1A-205	ENST00000548650	CENPS	Q8N2Z9	138 aa		12.49	□□□□□ -0.41
CHMP1A-205	ENST00000548650	ZNF709	Q8N972	641 aa		12.49	□□□□□ -0.41
CHMP1A-205	ENST00000548650	THAP8	Q8NA92	274 aa		12.49	□□□□□ -0.41
CHMP1A-205	ENST00000548650	TRGV9	Q99603	122 aa		12.49	□□□□□ -0.41
CHMP1A-205	ENST00000548650	PRSS46	E5RG02	174 aa		12.48	□□□□□ -0.41
CHMP1A-205	ENST00000548650	FABP1	P07148	127 aa		12.48	□□□□□ -0.41
CHMP1A-205	ENST00000548650	SLC25A6	P12236	298 aa		12.48	□□□□□ -0.41
CHMP1A-205	ENST00000548650	AP3S2	P59780	193 aa		12.48	□□□□□ -0.41
CHMP1A-205	ENST00000548650	PYDC2	Q56P42	97 aa		12.48	□□□□□ -0.41
CHMP1A-205	ENST00000548650	GSG1L	Q6UXU4	331 aa		12.48	□□□□□ -0.41

Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms