RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 GPR82Q96P67 336 aa12.78□□□□□ -0.36
CUX1-211ENST00000546411 DKK4Q9UBT3 224 aa12.78□□□□□ -0.36
CUX1-211ENST00000546411 A0A1W2PRE2 83 aa12.77□□□□□ -0.36
CUX1-211ENST00000546411 ZNF124Q15973 351 aa12.77□□□□□ -0.36
CUX1-211ENST00000546411 EXOC3-AS1Q8N2X6 119 aa12.77□□□□□ -0.36
CUX1-211ENST00000546411 GRAMD2BQ96HH9 432 aa12.77□□□□□ -0.36
CUX1-211ENST00000546411 C16orf92Q96LL3 132 aa12.77□□□□□ -0.36
CUX1-211ENST00000546411 RPL7P18124 248 aaKnown RBP12.77□□□□□ -0.36
CUX1-211ENST00000546411 HBBP68871 147 aa12.77□□□□□ -0.36
CUX1-211ENST00000546411 TEX45Q8NA69 505 aa12.77□□□□□ -0.36
CUX1-211ENST00000546411 OR4C5Q8NGB2 326 aa12.77□□□□□ -0.36
CUX1-211ENST00000546411 PMCHL2Q9BQD1 86 aa12.77□□□□□ -0.36
CUX1-211ENST00000546411 C2CD3Q4AC94 2353 aa12.77□□□□□ -0.37
CUX1-211ENST00000546411 C2orf83Q53S99 150 aa12.77□□□□□ -0.37
CUX1-211ENST00000546411 CLEC2AQ6UVW9 174 aa12.77□□□□□ -0.37
CUX1-211ENST00000546411 ZNF114Q8NC26 417 aa12.77□□□□□ -0.37
CUX1-211ENST00000546411 KCNS1Q96KK3 526 aa12.77□□□□□ -0.37
CUX1-211ENST00000546411 RNASE2P10153 161 aaKnown RBP12.77□□□□□ -0.37
CUX1-211ENST00000546411 REC114Q7Z4M0 266 aa12.77□□□□□ -0.37
CUX1-211ENST00000546411 EPDR1Q9UM22 224 aa12.77□□□□□ -0.37
CUX1-211ENST00000546411 EML5Q05BV3 1969 aa12.76□□□□□ -0.37
CUX1-211ENST00000546411 NBR2O15453 112 aa12.76□□□□□ -0.37
CUX1-211ENST00000546411 MGPP08493 103 aa12.76□□□□□ -0.37
CUX1-211ENST00000546411 PSG1P11464 419 aa12.76□□□□□ -0.37
CUX1-211ENST00000546411 COMPP49747 757 aaPredicted RBP12.76□□□□□ -0.37
CUX1-211ENST00000546411 PRSS8Q16651 343 aa12.76□□□□□ -0.37
CUX1-211ENST00000546411 TMEM78Q5T7P6 136 aa12.76□□□□□ -0.37
CUX1-211ENST00000546411 SRRM4A7MD48 611 aaKnown RBP12.76□□□□□ -0.37
CUX1-211ENST00000546411 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.76□□□□□ -0.37
CUX1-211ENST00000546411 SCRT1Q9BWW7 348 aa12.76□□□□□ -0.37
CUX1-211ENST00000546411 RPLP1P05386 114 aaKnown RBP12.76□□□□□ -0.37
CUX1-211ENST00000546411 CNTFRP26992 372 aa12.76□□□□□ -0.37
CUX1-211ENST00000546411 ARPC1AQ92747 370 aa12.76□□□□□ -0.37
CUX1-211ENST00000546411 CHODLQ9H9P2 273 aa12.76□□□□□ -0.37
CUX1-211ENST00000546411 M0QZ24 198 aa12.75□□□□□ -0.37
CUX1-211ENST00000546411 PMS2P5A8MQ11 134 aa12.75□□□□□ -0.37
CUX1-211ENST00000546411 SNAI2O43623 268 aa12.75□□□□□ -0.37
CUX1-211ENST00000546411 JOSD1Q15040 202 aaPredicted RBP12.75□□□□□ -0.37
CUX1-211ENST00000546411 NRN1Q9NPD7 142 aa12.75□□□□□ -0.37
CUX1-211ENST00000546411 IGHV1-3A0A0C4DH29 117 aa12.75□□□□□ -0.37
CUX1-211ENST00000546411 IFITM10A6NMD0 228 aa12.75□□□□□ -0.37
CUX1-211ENST00000546411 GGCTO75223 188 aaKnown RBP12.75□□□□□ -0.37
CUX1-211ENST00000546411 NDUFS6O75380 124 aaKnown RBP12.75□□□□□ -0.37
CUX1-211ENST00000546411 CD99P14209 185 aa12.75□□□□□ -0.37
CUX1-211ENST00000546411 PIP4P1Q86T03 277 aa12.75□□□□□ -0.37
CUX1-211ENST00000546411 TMEM116Q8NCL8 245 aa12.75□□□□□ -0.37
CUX1-211ENST00000546411 OR4B1Q8NGF8 309 aa12.75□□□□□ -0.37
CUX1-211ENST00000546411 TRANK1O15050 2925 aa12.75□□□□□ -0.37
CUX1-211ENST00000546411 VDAC2P45880 294 aaPredicted RBP12.74□□□□□ -0.37
CUX1-211ENST00000546411 NMUP48645 174 aa12.74□□□□□ -0.37
CUX1-211ENST00000546411 TAS2R60P59551 318 aa12.74□□□□□ -0.37
CUX1-211ENST00000546411 TPSG1Q9NRR2 321 aa12.74□□□□□ -0.37
CUX1-211ENST00000546411 USP9YO00507 2555 aaPredicted RBP12.74□□□□□ -0.37
CUX1-211ENST00000546411 HLA-DRB1P01911 266 aa12.74□□□□□ -0.37
CUX1-211ENST00000546411 CLEC19AQ6UXS0 136 aa12.74□□□□□ -0.37
CUX1-211ENST00000546411 ZNF738Q8NE65 137 aa12.74□□□□□ -0.37
CUX1-211ENST00000546411 LYPD6BQ8NI32 183 aa12.74□□□□□ -0.37
CUX1-211ENST00000546411 METTL26Q96S19 204 aa12.74□□□□□ -0.37
CUX1-211ENST00000546411 VPS25Q9BRG1 176 aa12.74□□□□□ -0.37
CUX1-211ENST00000546411 HSPB8Q9UJY1 196 aa12.74□□□□□ -0.37
CUX1-211ENST00000546411 CEP192Q8TEP8 1941 aa12.74□□□□□ -0.37
CUX1-211ENST00000546411 IGHV3-11P01762 117 aa12.74□□□□□ -0.37
CUX1-211ENST00000546411 PFN1P07737 140 aaKnown RBP12.74□□□□□ -0.37
CUX1-211ENST00000546411 CYB5R2Q6BCY4 276 aa12.74□□□□□ -0.37
CUX1-211ENST00000546411 TMEM167AQ8TBQ9 72 aa12.74□□□□□ -0.37
CUX1-211ENST00000546411 IGFBPL1Q8WX77 278 aa12.74□□□□□ -0.37
CUX1-211ENST00000546411 RNF125Q96EQ8 232 aa12.74□□□□□ -0.37
CUX1-211ENST00000546411 ABCA2Q9BZC7 2435 aa12.74□□□□□ -0.37
CUX1-211ENST00000546411 TRBV9A0A0B4J1U6 114 aa12.73□□□□□ -0.37
CUX1-211ENST00000546411 A0A1W2PPI3 338 aa12.73□□□□□ -0.37
CUX1-211ENST00000546411 SH2D7A6NKC9 451 aaPredicted RBP12.73□□□□□ -0.37
CUX1-211ENST00000546411 RPP21Q9H633 154 aaKnown RBP12.73□□□□□ -0.37
CUX1-211ENST00000546411 LOC102724200A0A096LPH7 203 aaPredicted RBP12.73□□□□□ -0.37
CUX1-211ENST00000546411 A1L4Q6 167 aa12.73□□□□□ -0.37
CUX1-211ENST00000546411 BTF3P20290 206 aaKnown RBP12.73□□□□□ -0.37
CUX1-211ENST00000546411 PMCHL1Q16048 86 aa12.73□□□□□ -0.37
CUX1-211ENST00000546411 TMEM14BQ9NUH8 114 aa12.73□□□□□ -0.37
CUX1-211ENST00000546411 TRAV30A0A087WSZ9 112 aa12.73□□□□□ -0.37
CUX1-211ENST00000546411 MSMPQ1L6U9 139 aa12.73□□□□□ -0.37
CUX1-211ENST00000546411 OSTCQ9NRP0 149 aa12.73□□□□□ -0.37
CUX1-211ENST00000546411 IGKV3-20P01619 116 aa12.73□□□□□ -0.37
CUX1-211ENST00000546411 NUDT10Q8NFP7 164 aa12.73□□□□□ -0.37
CUX1-211ENST00000546411 NUDT11Q96G61 164 aa12.73□□□□□ -0.37
CUX1-211ENST00000546411 KLK15Q9H2R5 256 aa12.73□□□□□ -0.37
CUX1-211ENST00000546411 PPIFP30405 207 aaKnown RBP12.72□□□□□ -0.37
CUX1-211ENST00000546411 ZNF841Q6ZN19 808 aa12.72□□□□□ -0.37
CUX1-211ENST00000546411 C18orf15Q96N68 181 aa12.72□□□□□ -0.37
CUX1-211ENST00000546411 IZUMO1RA6ND01 250 aa12.72□□□□□ -0.37
CUX1-211ENST00000546411 TMEM136Q6ZRR5 245 aa12.72□□□□□ -0.37
CUX1-211ENST00000546411 FAM169BQ8N8A8 192 aa12.72□□□□□ -0.37
CUX1-211ENST00000546411 NUP37Q8NFH4 326 aa12.72□□□□□ -0.37
CUX1-211ENST00000546411 CIARTQ8N365 385 aaPredicted RBP12.72□□□□□ -0.37
CUX1-211ENST00000546411 PRO3102Q9H379 93 aa12.72□□□□□ -0.37
CUX1-211ENST00000546411 AP5S1Q9NUS5 200 aa12.72□□□□□ -0.37
CUX1-211ENST00000546411 GOLT1BQ9Y3E0 138 aa12.72□□□□□ -0.37
CUX1-211ENST00000546411 NUP210LQ5VU65 1888 aa12.72□□□□□ -0.37
CUX1-211ENST00000546411 TCF21O43680 179 aa12.71□□□□□ -0.37
CUX1-211ENST00000546411 UQCRFS1P47985 274 aa12.71□□□□□ -0.37
CUX1-211ENST00000546411 FOXL1Q12952 345 aa12.71□□□□□ -0.37
CUX1-211ENST00000546411 COL5A1-AS1Q5SY13 56 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms