RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 ECSCRQ19T08 205 aa11.45□□□□□ -0.58
CLIP1-216ENST00000541410 DOPEY2Q9Y3R5 2298 aa11.44□□□□□ -0.58
CLIP1-216ENST00000541410 HYPMO75409 117 aa11.44□□□□□ -0.58
CLIP1-216ENST00000541410 OR2J3O76001 311 aa11.44□□□□□ -0.58
CLIP1-216ENST00000541410 COX6B1P14854 86 aa11.44□□□□□ -0.58
CLIP1-216ENST00000541410 BRS3P32247 399 aa11.44□□□□□ -0.58
CLIP1-216ENST00000541410 GALR1P47211 349 aa11.44□□□□□ -0.58
CLIP1-216ENST00000541410 RANP62826 216 aaKnown RBP11.44□□□□□ -0.58
CLIP1-216ENST00000541410 OR5I1Q13606 314 aa11.44□□□□□ -0.58
CLIP1-216ENST00000541410 FAM210BQ96KR6 192 aa11.44□□□□□ -0.58
CLIP1-216ENST00000541410 K7EN84 100 aa11.43□□□□□ -0.58
CLIP1-216ENST00000541410 TRGC2P03986 189 aa11.43□□□□□ -0.58
CLIP1-216ENST00000541410 AKR1D1P51857 326 aa11.43□□□□□ -0.58
CLIP1-216ENST00000541410 FAM3BP58499 235 aaPredicted RBP11.43□□□□□ -0.58
CLIP1-216ENST00000541410 KRTAP10-9P60411 292 aa11.43□□□□□ -0.58
CLIP1-216ENST00000541410 BCL6BQ8N143 479 aaPredicted RBP11.43□□□□□ -0.58
CLIP1-216ENST00000541410 FXYD5Q96DB9 178 aa11.43□□□□□ -0.58
CLIP1-216ENST00000541410 TXNDC17Q9BRA2 123 aa11.43□□□□□ -0.58
CLIP1-216ENST00000541410 TMUB1Q9BVT8 246 aa11.43□□□□□ -0.58
CLIP1-216ENST00000541410 TMEM242Q9NWH2 141 aa11.43□□□□□ -0.58
CLIP1-216ENST00000541410 A0A1W2PPQ1 181 aa11.43□□□□□ -0.58
CLIP1-216ENST00000541410 NHLRC2Q8NBF2 726 aa11.43□□□□□ -0.58
CLIP1-216ENST00000541410 SGK494Q96LW2 274 aa11.43□□□□□ -0.58
CLIP1-216ENST00000541410 RNF2Q99496 336 aa11.43□□□□□ -0.58
CLIP1-216ENST00000541410 CTDSP1Q9GZU7 261 aa11.43□□□□□ -0.58
CLIP1-216ENST00000541410 C7orf69Q9H7B7 122 aa11.43□□□□□ -0.58
CLIP1-216ENST00000541410 ELOA3CA0A087WX78 387 aaPredicted RBP11.42□□□□□ -0.58
CLIP1-216ENST00000541410 IGHV3-35A0A0C4DH35 117 aa11.42□□□□□ -0.58
CLIP1-216ENST00000541410 HELTA6NFD8 242 aa11.42□□□□□ -0.58
CLIP1-216ENST00000541410 G3V318 75 aa11.42□□□□□ -0.58
CLIP1-216ENST00000541410 ATP6V0E1O15342 81 aa11.42□□□□□ -0.58
CLIP1-216ENST00000541410 NDUFB8O95169 186 aa11.42□□□□□ -0.58
CLIP1-216ENST00000541410 RD3LP0DJH9 198 aa11.42□□□□□ -0.58
CLIP1-216ENST00000541410 SRSF8Q9BRL6 282 aaKnown RBP11.42□□□□□ -0.58
CLIP1-216ENST00000541410 LINC00527Q9UJ94 153 aa11.42□□□□□ -0.58
CLIP1-216ENST00000541410 RPH3ALQ9UNE2 315 aa11.42□□□□□ -0.58
CLIP1-216ENST00000541410 IGLV11-55A0A075B6I3 123 aa11.42□□□□□ -0.58
CLIP1-216ENST00000541410 IGHV3OR16-8A0A075B7F1 116 aa11.42□□□□□ -0.58
CLIP1-216ENST00000541410 IGHV1-69DA0A0B4J2H0 117 aa11.42□□□□□ -0.58
CLIP1-216ENST00000541410 NDUFS8O00217 210 aa11.42□□□□□ -0.58
CLIP1-216ENST00000541410 IGHV1-69P01742 117 aa11.42□□□□□ -0.58
CLIP1-216ENST00000541410 GNG5P63218 68 aa11.42□□□□□ -0.58
CLIP1-216ENST00000541410 CENPWQ5EE01 88 aa11.42□□□□□ -0.58
CLIP1-216ENST00000541410 POLR3KQ9Y2Y1 108 aaPredicted RBP11.42□□□□□ -0.58
CLIP1-216ENST00000541410 TRAV34A0A0B4J273 112 aa11.41□□□□□ -0.58
CLIP1-216ENST00000541410 GNG7O60262 68 aa11.41□□□□□ -0.58
CLIP1-216ENST00000541410 AVPP01185 164 aa11.41□□□□□ -0.58
CLIP1-216ENST00000541410 S100A6P06703 90 aa11.41□□□□□ -0.58
CLIP1-216ENST00000541410 PFN1P07737 140 aaKnown RBP11.41□□□□□ -0.58
CLIP1-216ENST00000541410 UNQ5815/PRO19632Q6UWF5 114 aa11.41□□□□□ -0.58
CLIP1-216ENST00000541410 C11orf52Q96A22 123 aa11.41□□□□□ -0.58
CLIP1-216ENST00000541410 OR5B12Q96R08 314 aa11.41□□□□□ -0.58
CLIP1-216ENST00000541410 BIN3Q9NQY0 253 aa11.41□□□□□ -0.58
CLIP1-216ENST00000541410 C1RLQ9NZP8 487 aa11.41□□□□□ -0.58
CLIP1-216ENST00000541410 HIGD1AQ9Y241 93 aa11.41□□□□□ -0.58
CLIP1-216ENST00000541410 A0A1W2PRE2 83 aa11.41□□□□□ -0.58
CLIP1-216ENST00000541410 SLC17A3O00476 420 aa11.41□□□□□ -0.58
CLIP1-216ENST00000541410 GOSR1O95249 250 aa11.41□□□□□ -0.58
CLIP1-216ENST00000541410 MSMBP08118 114 aa11.41□□□□□ -0.58
CLIP1-216ENST00000541410 LY6EQ16553 131 aa11.41□□□□□ -0.58
CLIP1-216ENST00000541410 Q56UQ5 140 aa11.41□□□□□ -0.58
CLIP1-216ENST00000541410 TTC9CQ8N5M4 171 aa11.41□□□□□ -0.58
CLIP1-216ENST00000541410 SFRP2Q96HF1 295 aa11.41□□□□□ -0.58
CLIP1-216ENST00000541410 HIF1ANQ9NWT6 349 aa11.41□□□□□ -0.58
CLIP1-216ENST00000541410 NBPF19A0A087WUL8 3843 aa11.4□□□□□ -0.58
CLIP1-216ENST00000541410 MDFIC2A0A1B0GVS7 189 aa11.4□□□□□ -0.58
CLIP1-216ENST00000541410 OR2T8A6NH00 312 aa11.4□□□□□ -0.58
CLIP1-216ENST00000541410 NPIPB5A8MRT5 1133 aa11.4□□□□□ -0.58
CLIP1-216ENST00000541410 IL4P05112 153 aa11.4□□□□□ -0.58
CLIP1-216ENST00000541410 SLC25A39Q9BZJ4 359 aaPredicted RBP11.4□□□□□ -0.58
CLIP1-216ENST00000541410 F8W735 103 aaPredicted RBP11.4□□□□□ -0.58
CLIP1-216ENST00000541410 NDUFS6O75380 124 aaKnown RBP11.4□□□□□ -0.58
CLIP1-216ENST00000541410 GNG4P50150 75 aa11.4□□□□□ -0.58
CLIP1-216ENST00000541410 C1QL4Q86Z23 238 aa11.4□□□□□ -0.58
CLIP1-216ENST00000541410 ANAPC16Q96DE5 110 aa11.4□□□□□ -0.58
CLIP1-216ENST00000541410 CHD6Q8TD26 2715 aa11.4□□□□□ -0.59
CLIP1-216ENST00000541410 HLA-DRB1P01911 266 aa11.39□□□□□ -0.59
CLIP1-216ENST00000541410 NBEAP1P0C6P0 100 aa11.39□□□□□ -0.59
CLIP1-216ENST00000541410 TEX38Q6PEX7 206 aa11.39□□□□□ -0.59
CLIP1-216ENST00000541410 ZNF329Q86UD4 541 aa11.39□□□□□ -0.59
CLIP1-216ENST00000541410 MS4A10Q96PG2 267 aa11.39□□□□□ -0.59
CLIP1-216ENST00000541410 PRELID1Q9Y255 219 aa11.39□□□□□ -0.59
CLIP1-216ENST00000541410 S100PP25815 95 aa11.39□□□□□ -0.59
CLIP1-216ENST00000541410 FABP9Q0Z7S8 132 aa11.39□□□□□ -0.59
CLIP1-216ENST00000541410 C9orf152Q5JTZ5 239 aa11.39□□□□□ -0.59
CLIP1-216ENST00000541410 PIFOQ8TCI5 191 aa11.39□□□□□ -0.59
CLIP1-216ENST00000541410 C21orf62Q9NYP8 219 aa11.39□□□□□ -0.59
CLIP1-216ENST00000541410 FBXL7Q9UJT9 491 aa11.39□□□□□ -0.59
CLIP1-216ENST00000541410 PGPA6NDG6 321 aa11.38□□□□□ -0.59
CLIP1-216ENST00000541410 MGST1P10620 155 aaKnown RBP11.38□□□□□ -0.59
CLIP1-216ENST00000541410 GP9P14770 177 aa11.38□□□□□ -0.59
CLIP1-216ENST00000541410 ZNF600Q6ZNG1 722 aa11.38□□□□□ -0.59
CLIP1-216ENST00000541410 ZNF491Q8N8L2 437 aa11.38□□□□□ -0.59
CLIP1-216ENST00000541410 SGMS2Q8NHU3 365 aa11.38□□□□□ -0.59
CLIP1-216ENST00000541410 RNASE7Q9H1E1 156 aaKnown RBP11.38□□□□□ -0.59
CLIP1-216ENST00000541410 NAV2Q8IVL1 2488 aa11.38□□□□□ -0.59
CLIP1-216ENST00000541410 TRBV24-1A0A075B6N3 115 aa11.38□□□□□ -0.59
CLIP1-216ENST00000541410 TSPAN9O75954 239 aa11.38□□□□□ -0.59
CLIP1-216ENST00000541410 MFAP4P55083 255 aa11.38□□□□□ -0.59
CLIP1-216ENST00000541410 PLP1P60201 277 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms