RNA–Protein interactions for RNA: ENST00000540819.1

PRKDC-209, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 3

Gene PRKDC, Length 537 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-209ENST00000540819 ADAT1Q9BUB4 502 aaKnown RBP3.42□□□□□ -1.86
PRKDC-209ENST00000540819 COA4Q9NYJ1 87 aa3.42□□□□□ -1.86
PRKDC-209ENST00000540819 HEY1Q9Y5J3 304 aa3.42□□□□□ -1.86
PRKDC-209ENST00000540819 KIF25-AS1Q9Y6Z4 181 aa3.42□□□□□ -1.86
PRKDC-209ENST00000540819 PRG4Q92954 1404 aaPredicted RBP3.42□□□□□ -1.86
PRKDC-209ENST00000540819 FOCADQ5VW36 1801 aa3.42□□□□□ -1.86
PRKDC-209ENST00000540819 MED1Q15648 1581 aaPredicted RBP3.42□□□□□ -1.86
PRKDC-209ENST00000540819 PHLPP1O60346 1717 aa3.41□□□□□ -1.86
PRKDC-209ENST00000540819 NYNRINQ9P2P1 1898 aaKnown RBP3.41□□□□□ -1.86
PRKDC-209ENST00000540819 N4BP2Q86UW6 1770 aaPredicted RBP3.41□□□□□ -1.86
PRKDC-209ENST00000540819 IGKV3D-20A0A0C4DH25 116 aa3.41□□□□□ -1.86
PRKDC-209ENST00000540819 A0A0J9YW62 118 aa3.41□□□□□ -1.86
PRKDC-209ENST00000540819 PANO1I0J062 215 aa3.41□□□□□ -1.86
PRKDC-209ENST00000540819 IL4P05112 153 aa3.41□□□□□ -1.86
PRKDC-209ENST00000540819 CD24P25063 80 aa3.41□□□□□ -1.86
PRKDC-209ENST00000540819 XCL1P47992 114 aa3.41□□□□□ -1.86
PRKDC-209ENST00000540819 FOXA1P55317 472 aa3.41□□□□□ -1.86
PRKDC-209ENST00000540819 NOXRED1Q6NXP6 359 aa3.41□□□□□ -1.86
PRKDC-209ENST00000540819 CTAGE3PQ8IX95 158 aa3.41□□□□□ -1.86
PRKDC-209ENST00000540819 KLF14Q8TD94 323 aaPredicted RBP3.41□□□□□ -1.86
PRKDC-209ENST00000540819 C14orf144Q96I85 54 aa3.41□□□□□ -1.86
PRKDC-209ENST00000540819 MIEN1Q9BRT3 115 aa3.41□□□□□ -1.86
PRKDC-209ENST00000540819 PDCD10Q9BUL8 212 aa3.41□□□□□ -1.86
PRKDC-209ENST00000540819 C16orf95Q9H693 158 aa3.41□□□□□ -1.86
PRKDC-209ENST00000540819 SCN4AP35499 1836 aa3.41□□□□□ -1.86
PRKDC-209ENST00000540819 SPATA31E1Q6ZUB1 1445 aa3.41□□□□□ -1.86
PRKDC-209ENST00000540819 ARID1AO14497 2285 aa3.41□□□□□ -1.86
PRKDC-209ENST00000540819 COL18A1P39060 1754 aa3.4□□□□□ -1.86
PRKDC-209ENST00000540819 PTPRSQ13332 1948 aa3.4□□□□□ -1.86
PRKDC-209ENST00000540819 IGHV3-15A0A0B4J1V0 119 aa3.4□□□□□ -1.87
PRKDC-209ENST00000540819 TRAV13-1A0A0B4J241 112 aa3.4□□□□□ -1.87
PRKDC-209ENST00000540819 H3BMG7 143 aa3.4□□□□□ -1.87
PRKDC-209ENST00000540819 TP53I11O14683 189 aa3.4□□□□□ -1.87
PRKDC-209ENST00000540819 HIST1H2BKO60814 126 aa3.4□□□□□ -1.87
PRKDC-209ENST00000540819 HIST1H2BJP06899 126 aa3.4□□□□□ -1.87
PRKDC-209ENST00000540819 MSMBP08118 114 aa3.4□□□□□ -1.87
PRKDC-209ENST00000540819 IGLC6P0CF74 106 aa3.4□□□□□ -1.87
PRKDC-209ENST00000540819 LINC00694P0DN24 101 aa3.4□□□□□ -1.87
PRKDC-209ENST00000540819 RAB5CP51148 216 aa3.4□□□□□ -1.87
PRKDC-209ENST00000540819 ARPP19P56211 112 aa3.4□□□□□ -1.87
PRKDC-209ENST00000540819 KISS1Q15726 138 aa3.4□□□□□ -1.87
PRKDC-209ENST00000540819 OCIAD2Q56VL3 154 aa3.4□□□□□ -1.87
PRKDC-209ENST00000540819 CHCHD2P9Q5T1J5 151 aaPredicted RBP3.4□□□□□ -1.87
PRKDC-209ENST00000540819 C3orf62Q6ZUJ4 267 aa3.4□□□□□ -1.87
PRKDC-209ENST00000540819 SIGLECL1Q8N7X8 197 aa3.4□□□□□ -1.87
PRKDC-209ENST00000540819 EPDR1Q9UM22 224 aa3.4□□□□□ -1.87
PRKDC-209ENST00000540819 ZNF443Q9Y2A4 671 aaPredicted RBP3.4□□□□□ -1.87
PRKDC-209ENST00000540819 CDC42BPBQ9Y5S2 1711 aa3.4□□□□□ -1.87
PRKDC-209ENST00000540819 ANAPC1Q9H1A4 1944 aa3.4□□□□□ -1.87
PRKDC-209ENST00000540819 HEATR5AQ86XA9 2040 aa3.39□□□□□ -1.87
PRKDC-209ENST00000540819 A0A1W2PQD3 144 aa3.39□□□□□ -1.87
PRKDC-209ENST00000540819 GGTLC3B5MD39 225 aa3.39□□□□□ -1.87
PRKDC-209ENST00000540819 F6UZH7 168 aa3.39□□□□□ -1.87
PRKDC-209ENST00000540819 C3orf84H3BNL1 204 aa3.39□□□□□ -1.87
PRKDC-209ENST00000540819 NDUFB3O43676 98 aa3.39□□□□□ -1.87
PRKDC-209ENST00000540819 TCL1BO95988 128 aa3.39□□□□□ -1.87
PRKDC-209ENST00000540819 CSRP1P21291 193 aaKnown RBP3.39□□□□□ -1.87
PRKDC-209ENST00000540819 RBP2P50120 134 aa3.39□□□□□ -1.87
PRKDC-209ENST00000540819 C2orf91Q6ZV80 131 aa3.39□□□□□ -1.87
PRKDC-209ENST00000540819 OR5A2Q8NGI9 324 aa3.39□□□□□ -1.87
PRKDC-209ENST00000540819 ZNF418Q8TF45 676 aaPredicted RBP3.39□□□□□ -1.87
PRKDC-209ENST00000540819 BRK1Q8WUW1 75 aa3.39□□□□□ -1.87
PRKDC-209ENST00000540819 NAT14Q8WUY8 206 aa3.39□□□□□ -1.87
PRKDC-209ENST00000540819 NPCDR1Q9BY65 106 aa3.39□□□□□ -1.87
PRKDC-209ENST00000540819 TAF9BQ9HBM6 251 aa3.39□□□□□ -1.87
PRKDC-209ENST00000540819 TNFSF18Q9UNG2 199 aa3.39□□□□□ -1.87
PRKDC-209ENST00000540819 LTBP4Q8N2S1 1624 aa3.39□□□□□ -1.87
PRKDC-209ENST00000540819 BCL9LQ86UU0 1499 aa3.39□□□□□ -1.87
PRKDC-209ENST00000540819 NUP98P52948 1817 aa3.38□□□□□ -1.87
PRKDC-209ENST00000540819 TRBV27A0A0K0K1C4 114 aa3.38□□□□□ -1.87
PRKDC-209ENST00000540819 NPFFO15130 113 aa3.38□□□□□ -1.87
PRKDC-209ENST00000540819 SLC22A1O15245 554 aa3.38□□□□□ -1.87
PRKDC-209ENST00000540819 CREBL2O60519 120 aaPredicted RBP3.38□□□□□ -1.87
PRKDC-209ENST00000540819 S100A8P05109 93 aa3.38□□□□□ -1.87
PRKDC-209ENST00000540819 HLA-EP13747 358 aa3.38□□□□□ -1.87
PRKDC-209ENST00000540819 AZU1P20160 251 aa3.38□□□□□ -1.87
PRKDC-209ENST00000540819 NFYAP23511 347 aaPredicted RBP3.38□□□□□ -1.87
PRKDC-209ENST00000540819 MAXP61244 160 aa3.38□□□□□ -1.87
PRKDC-209ENST00000540819 MYL5Q02045 173 aa3.38□□□□□ -1.87
PRKDC-209ENST00000540819 ZNF117Q03924 483 aa3.38□□□□□ -1.87
PRKDC-209ENST00000540819 DYNAPQ8N1N2 210 aa3.38□□□□□ -1.87
PRKDC-209ENST00000540819 TEX29Q8N6K0 151 aa3.38□□□□□ -1.87
PRKDC-209ENST00000540819 LINC00612Q8N6U2 182 aa3.38□□□□□ -1.87
PRKDC-209ENST00000540819 OR10P1Q8NGE3 313 aa3.38□□□□□ -1.87
PRKDC-209ENST00000540819 PFN4Q8NHR9 129 aa3.38□□□□□ -1.87
PRKDC-209ENST00000540819 GINS4Q9BRT9 223 aa3.38□□□□□ -1.87
PRKDC-209ENST00000540819 ASF1BQ9NVP2 202 aa3.38□□□□□ -1.87
PRKDC-209ENST00000540819 COL2A1P02458 1487 aaPredicted RBP3.38□□□□□ -1.87
PRKDC-209ENST00000540819 CEP164Q9UPV0 1460 aa3.38□□□□□ -1.87
PRKDC-209ENST00000540819 CCDC88AQ3V6T2 1871 aa3.38□□□□□ -1.87
PRKDC-209ENST00000540819 DSPPQ9NZW4 1301 aa3.38□□□□□ -1.87
PRKDC-209ENST00000540819 TMEM2Q9UHN6 1383 aa3.38□□□□□ -1.87
PRKDC-209ENST00000540819 ZNF646O15015 1829 aaPredicted RBP3.37□□□□□ -1.87
PRKDC-209ENST00000540819 TUBGCP6Q96RT7 1819 aa3.37□□□□□ -1.87
PRKDC-209ENST00000540819 VPS8Q8N3P4 1428 aa3.37□□□□□ -1.87
PRKDC-209ENST00000540819 TCOF1Q13428 1488 aaKnown RBP3.37□□□□□ -1.87
PRKDC-209ENST00000540819 TRPM3Q9HCF6 1732 aaPredicted RBP3.37□□□□□ -1.87
PRKDC-209ENST00000540819 A0A1B0GVY2 172 aa3.37□□□□□ -1.87
PRKDC-209ENST00000540819 TMEM235A6NFC5 223 aa3.37□□□□□ -1.87
PRKDC-209ENST00000540819 C17orf98A8MV24 154 aa3.37□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms