RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 EML5Q05BV3 1969 aa8.86□□□□□ -0.99
CLIP1-209ENST00000537178 NUP210LQ5VU65 1888 aa8.86□□□□□ -0.99
CLIP1-209ENST00000537178 SPTAN1Q13813 2472 aaKnown RBP8.86□□□□□ -0.99
CLIP1-209ENST00000537178 NDUFS8O00217 210 aa8.86□□□□□ -0.99
CLIP1-209ENST00000537178 OR9G4Q8NGQ1 327 aa8.86□□□□□ -0.99
CLIP1-209ENST00000537178 PLPPR1Q8TBJ4 325 aa8.86□□□□□ -0.99
CLIP1-209ENST00000537178 TSKUQ8WUA8 353 aa8.86□□□□□ -0.99
CLIP1-209ENST00000537178 MRPS18CQ9Y3D5 142 aaKnown RBP8.86□□□□□ -0.99
CLIP1-209ENST00000537178 IGKV1D-43A0A0B4J1Z2 117 aa8.86□□□□□ -0.99
CLIP1-209ENST00000537178 ERVK11-1P61568 191 aa8.86□□□□□ -0.99
CLIP1-209ENST00000537178 CDK2AP2O75956 126 aa8.86□□□□□ -0.99
CLIP1-209ENST00000537178 IGHV1-2P23083 117 aa8.86□□□□□ -0.99
CLIP1-209ENST00000537178 PRCDQ00LT1 54 aa8.86□□□□□ -0.99
CLIP1-209ENST00000537178 CSRP2Q16527 193 aa8.86□□□□□ -0.99
CLIP1-209ENST00000537178 FAM166AQ6J272 317 aa8.86□□□□□ -0.99
CLIP1-209ENST00000537178 RNASE6Q93091 150 aaKnown RBP8.86□□□□□ -0.99
CLIP1-209ENST00000537178 WDR83OSQ9Y284 106 aa8.86□□□□□ -0.99
CLIP1-209ENST00000537178 A0A0U1RRA0 63 aa8.85□□□□□ -0.99
CLIP1-209ENST00000537178 LGALS1P09382 135 aaKnown RBP8.85□□□□□ -0.99
CLIP1-209ENST00000537178 BTCP35070 178 aa8.85□□□□□ -0.99
CLIP1-209ENST00000537178 CD300EQ496F6 205 aaPredicted RBP8.85□□□□□ -0.99
CLIP1-209ENST00000537178 WNK2Q9Y3S1 2297 aa8.85□□□□□ -0.99
CLIP1-209ENST00000537178 SZT2Q5T011 3432 aa8.85□□□□□ -0.99
CLIP1-209ENST00000537178 MUC22E2RYF6 1773 aaPredicted RBP8.85□□□□□ -0.99
CLIP1-209ENST00000537178 FAM90A9PA6NNJ1 464 aa8.85□□□□□ -0.99
CLIP1-209ENST00000537178 TOMM40O96008 361 aa8.85□□□□□ -0.99
CLIP1-209ENST00000537178 PYYP10082 97 aa8.85□□□□□ -0.99
CLIP1-209ENST00000537178 MORN2Q502X0 79 aa8.85□□□□□ -0.99
CLIP1-209ENST00000537178 TEX38Q6PEX7 206 aa8.85□□□□□ -0.99
CLIP1-209ENST00000537178 ABHD17AQ96GS6 310 aa8.85□□□□□ -0.99
CLIP1-209ENST00000537178 C18orf12Q96KH6 178 aa8.85□□□□□ -0.99
CLIP1-209ENST00000537178 ID3Q02535 119 aa8.85□□□□□ -0.99
CLIP1-209ENST00000537178 RSPO4Q2I0M5 234 aaPredicted RBP8.85□□□□□ -0.99
CLIP1-209ENST00000537178 FAM89BQ8N5H3 189 aa8.85□□□□□ -0.99
CLIP1-209ENST00000537178 OCC1Q8TAD7 63 aa8.85□□□□□ -0.99
CLIP1-209ENST00000537178 TNFRSF14Q92956 283 aa8.85□□□□□ -0.99
CLIP1-209ENST00000537178 IGFBP3P17936 291 aaPredicted RBP8.84□□□□□ -0.99
CLIP1-209ENST00000537178 SRSF4Q08170 494 aaKnown RBP8.84□□□□□ -0.99
CLIP1-209ENST00000537178 PLEKHB2Q96CS7 222 aa8.84□□□□□ -0.99
CLIP1-209ENST00000537178 TBX6O95947 436 aaPredicted RBP8.84□□□□□ -0.99
CLIP1-209ENST00000537178 SAMD5Q5TGI4 173 aa8.84□□□□□ -0.99
CLIP1-209ENST00000537178 ZNF562Q6V9R5 426 aa8.84□□□□□ -0.99
CLIP1-209ENST00000537178 SLC25A48Q6ZT89 311 aaKnown RBP8.84□□□□□ -0.99
CLIP1-209ENST00000537178 NR2C2APQ86WQ0 139 aa8.84□□□□□ -0.99
CLIP1-209ENST00000537178 PRADC1Q9BSG0 188 aa8.84□□□□□ -0.99
CLIP1-209ENST00000537178 PPIFP30405 207 aaKnown RBP8.84□□□□□ -0.99
CLIP1-209ENST00000537178 PAX8Q06710 450 aa8.84□□□□□ -0.99
CLIP1-209ENST00000537178 RNF126Q9BV68 326 aa8.84□□□□□ -0.99
CLIP1-209ENST00000537178 IGKV1D-13A0A0B4J2D9 117 aa8.84□□□□□ -0.99
CLIP1-209ENST00000537178 HIST1H2BKO60814 126 aa8.84□□□□□ -0.99
CLIP1-209ENST00000537178 HIST1H2BJP06899 126 aa8.84□□□□□ -0.99
CLIP1-209ENST00000537178 IGKV1-13P0DP09 117 aa8.84□□□□□ -0.99
CLIP1-209ENST00000537178 CCL1P22362 96 aa8.84□□□□□ -0.99
CLIP1-209ENST00000537178 HIST1H2BOP23527 126 aa8.84□□□□□ -0.99
CLIP1-209ENST00000537178 HIST1H2BBP33778 126 aa8.84□□□□□ -0.99
CLIP1-209ENST00000537178 HIST1H2BDP58876 126 aa8.84□□□□□ -0.99
CLIP1-209ENST00000537178 HIST1H2BCP62807 126 aa8.84□□□□□ -0.99
CLIP1-209ENST00000537178 EFNB3Q15768 340 aa8.84□□□□□ -0.99
CLIP1-209ENST00000537178 HIST2H2BEQ16778 126 aa8.84□□□□□ -0.99
CLIP1-209ENST00000537178 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.84□□□□□ -0.99
CLIP1-209ENST00000537178 HIST1H2BHQ93079 126 aa8.84□□□□□ -0.99
CLIP1-209ENST00000537178 HIST1H2BNQ99877 126 aa8.84□□□□□ -0.99
CLIP1-209ENST00000537178 HIST1H2BMQ99879 126 aa8.84□□□□□ -0.99
CLIP1-209ENST00000537178 PAX4O43316 350 aa8.83□□□□□ -1
CLIP1-209ENST00000537178 GTSCR1Q86UQ5 136 aa8.83□□□□□ -1
CLIP1-209ENST00000537178 DTX1Q86Y01 620 aa8.83□□□□□ -1
CLIP1-209ENST00000537178 METRNQ9UJH8 293 aa8.83□□□□□ -1
CLIP1-209ENST00000537178 SDK2Q58EX2 2172 aa8.83□□□□□ -1
CLIP1-209ENST00000537178 WNT2P09544 360 aa8.83□□□□□ -1
CLIP1-209ENST00000537178 GATD1Q8NB37 220 aa8.83□□□□□ -1
CLIP1-209ENST00000537178 IMMP1LQ96LU5 166 aa8.83□□□□□ -1
CLIP1-209ENST00000537178 TMEM8BA6NDV4 472 aa8.83□□□□□ -1
CLIP1-209ENST00000537178 CEACAM1P13688 526 aa8.83□□□□□ -1
CLIP1-209ENST00000537178 CDKN1AP38936 164 aa8.83□□□□□ -1
CLIP1-209ENST00000537178 ZNF497Q6ZNH5 498 aa8.83□□□□□ -1
CLIP1-209ENST00000537178 ZNF415Q09FC8 603 aa8.83□□□□□ -1
CLIP1-209ENST00000537178 LAGE3Q14657 143 aa8.83□□□□□ -1
CLIP1-209ENST00000537178 ACACAQ13085 2346 aa8.82□□□□□ -1
CLIP1-209ENST00000537178 EVI2AP22794 236 aa8.82□□□□□ -1
CLIP1-209ENST00000537178 RPL36AP83881 106 aaKnown RBP8.82□□□□□ -1
CLIP1-209ENST00000537178 TMEM249Q2WGJ8 235 aa8.82□□□□□ -1
CLIP1-209ENST00000537178 RPL36ALQ969Q0 106 aaKnown RBP8.82□□□□□ -1
CLIP1-209ENST00000537178 MGST2Q99735 147 aa8.82□□□□□ -1
CLIP1-209ENST00000537178 REG4Q9BYZ8 158 aa8.82□□□□□ -1
CLIP1-209ENST00000537178 TRBV24-1A0A075B6N3 115 aa8.82□□□□□ -1
CLIP1-209ENST00000537178 F8WEM9 126 aa8.82□□□□□ -1
CLIP1-209ENST00000537178 J3QRE1 110 aa8.82□□□□□ -1
CLIP1-209ENST00000537178 CD5P06127 495 aa8.82□□□□□ -1
CLIP1-209ENST00000537178 DUTP33316 252 aaKnown RBP8.82□□□□□ -1
CLIP1-209ENST00000537178 FOXL1Q12952 345 aa8.82□□□□□ -1
CLIP1-209ENST00000537178 ZFAND6Q6FIF0 208 aa8.82□□□□□ -1
CLIP1-209ENST00000537178 C9orf106Q8NAJ2 232 aa8.82□□□□□ -1
CLIP1-209ENST00000537178 LAMTOR3Q9UHA4 124 aa8.82□□□□□ -1
CLIP1-209ENST00000537178 GZMBP10144 247 aa8.82□□□□□ -1
CLIP1-209ENST00000537178 NPIPB5A8MRT5 1133 aa8.82□□□□□ -1
CLIP1-209ENST00000537178 F8VVB4 439 aa8.82□□□□□ -1
CLIP1-209ENST00000537178 F8VWA3 439 aa8.82□□□□□ -1
CLIP1-209ENST00000537178 LINC00114Q6XXX2 140 aa8.82□□□□□ -1
CLIP1-209ENST00000537178 RASL10AQ92737 203 aa8.82□□□□□ -1
CLIP1-209ENST00000537178 TMEM242Q9NWH2 141 aa8.82□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms