RNA–Protein interactions for RNA: ENST00000536710.1

PRKDC-208, Transcript of protein kinase, DNA-activated, catalytic subunit, humanhuman

TSL 4

Gene PRKDC, Length 554 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDC-208ENST00000536710 FAM172AQ8WUF8 416 aa1.9□□□□□ -2.11
PRKDC-208ENST00000536710 AGLP35573 1532 aa1.9□□□□□ -2.11
PRKDC-208ENST00000536710 MLH3Q9UHC1 1453 aa1.89□□□□□ -2.11
PRKDC-208ENST00000536710 SUPT6HQ7KZ85 1726 aaKnown RBP1.89□□□□□ -2.11
PRKDC-208ENST00000536710 SORL1Q92673 2214 aa1.89□□□□□ -2.11
PRKDC-208ENST00000536710 MYO3AQ8NEV4 1616 aa1.89□□□□□ -2.11
PRKDC-208ENST00000536710 TRAV1-1A0A0B4J248 108 aa1.89□□□□□ -2.11
PRKDC-208ENST00000536710 IGKV3D-7A0A0C4DH55 119 aa1.89□□□□□ -2.11
PRKDC-208ENST00000536710 IGKV3OR2-268A0A0C4DH90 116 aa1.89□□□□□ -2.11
PRKDC-208ENST00000536710 HMGB3O15347 200 aaKnown RBP1.89□□□□□ -2.11
PRKDC-208ENST00000536710 OR2B3O76000 313 aa1.89□□□□□ -2.11
PRKDC-208ENST00000536710 OR4E1P0C645 316 aa1.89□□□□□ -2.11
PRKDC-208ENST00000536710 ASAH2BP0C7U1 165 aa1.89□□□□□ -2.11
PRKDC-208ENST00000536710 KRTAP21-3Q3LHN1 58 aa1.89□□□□□ -2.11
PRKDC-208ENST00000536710 PHF13Q86YI8 300 aaPredicted RBP1.89□□□□□ -2.11
PRKDC-208ENST00000536710 C15orf53Q8NAA6 179 aa1.89□□□□□ -2.11
PRKDC-208ENST00000536710 OR11H6Q8NGC7 330 aa1.89□□□□□ -2.11
PRKDC-208ENST00000536710 AQP3Q92482 292 aa1.89□□□□□ -2.11
PRKDC-208ENST00000536710 HIST1H2BLQ99880 126 aa1.89□□□□□ -2.11
PRKDC-208ENST00000536710 REG4Q9BYZ8 158 aa1.89□□□□□ -2.11
PRKDC-208ENST00000536710 MIXL1Q9H2W2 232 aa1.89□□□□□ -2.11
PRKDC-208ENST00000536710 TAS2R4Q9NYW5 299 aa1.89□□□□□ -2.11
PRKDC-208ENST00000536710 KIF13BQ9NQT8 1826 aa1.89□□□□□ -2.11
PRKDC-208ENST00000536710 PTPRBP23467 1997 aa1.89□□□□□ -2.11
PRKDC-208ENST00000536710 POLR1AO95602 1720 aaPredicted RBP1.88□□□□□ -2.11
PRKDC-208ENST00000536710 ZNF518AQ6AHZ1 1483 aa1.88□□□□□ -2.11
PRKDC-208ENST00000536710 COL4A1P02462 1669 aa1.88□□□□□ -2.11
PRKDC-208ENST00000536710 CLTCQ00610 1675 aaKnown RBP1.88□□□□□ -2.11
PRKDC-208ENST00000536710 MRPS14O60783 128 aaKnown RBP1.88□□□□□ -2.11
PRKDC-208ENST00000536710 MGST1P10620 155 aaKnown RBP1.88□□□□□ -2.11
PRKDC-208ENST00000536710 Q8N2B8 174 aa1.88□□□□□ -2.11
PRKDC-208ENST00000536710 OR13D1Q8NGV5 346 aa1.88□□□□□ -2.11
PRKDC-208ENST00000536710 WFDC5Q8TCV5 224 aa1.88□□□□□ -2.11
PRKDC-208ENST00000536710 UTP11Q9Y3A2 253 aaKnown RBP1.88□□□□□ -2.11
PRKDC-208ENST00000536710 SOX21Q9Y651 276 aaPredicted RBP1.88□□□□□ -2.11
PRKDC-208ENST00000536710 ARL5AQ9Y689 179 aa1.88□□□□□ -2.11
PRKDC-208ENST00000536710 XIRP1Q702N8 1843 aaKnown RBP1.88□□□□□ -2.11
PRKDC-208ENST00000536710 TROQ12816 1431 aaPredicted RBP1.88□□□□□ -2.11
PRKDC-208ENST00000536710 FMN1Q68DA7 1419 aa1.88□□□□□ -2.11
PRKDC-208ENST00000536710 CASKIN1Q8WXD9 1431 aa1.88□□□□□ -2.11
PRKDC-208ENST00000536710 TIAM1Q13009 1591 aa1.88□□□□□ -2.11
PRKDC-208ENST00000536710 CCDC18Q5T9S5 1454 aa1.88□□□□□ -2.11
PRKDC-208ENST00000536710 FYCO1Q9BQS8 1478 aa1.88□□□□□ -2.11
PRKDC-208ENST00000536710 MROH1Q8NDA8 1641 aa1.88□□□□□ -2.11
PRKDC-208ENST00000536710 RNF17Q9BXT8 1623 aaKnown RBP1.88□□□□□ -2.11
PRKDC-208ENST00000536710 ALKQ9UM73 1620 aa1.88□□□□□ -2.11
PRKDC-208ENST00000536710 FN1P02751 2386 aaKnown RBP1.87□□□□□ -2.11
PRKDC-208ENST00000536710 ATP7AQ04656 1500 aa1.87□□□□□ -2.11
PRKDC-208ENST00000536710 SYCP2Q9BX26 1530 aa1.87□□□□□ -2.11
PRKDC-208ENST00000536710 FAM135AQ9P2D6 1515 aa1.87□□□□□ -2.11
PRKDC-208ENST00000536710 CROCC2H7BZ55 1655 aa1.87□□□□□ -2.11
PRKDC-208ENST00000536710 ZC3H13Q5T200 1668 aaKnown RBP1.87□□□□□ -2.11
PRKDC-208ENST00000536710 IGKV2-40A0A087WW87 121 aaPredicted RBP1.87□□□□□ -2.11
PRKDC-208ENST00000536710 IGKV2D-40P01614 121 aaPredicted RBP1.87□□□□□ -2.11
PRKDC-208ENST00000536710 SRIP30626 198 aa1.87□□□□□ -2.11
PRKDC-208ENST00000536710 BRS3P32247 399 aa1.87□□□□□ -2.11
PRKDC-208ENST00000536710 EIF5AP63241 154 aaKnown RBP1.87□□□□□ -2.11
PRKDC-208ENST00000536710 RNASE10Q5GAN6 216 aaKnown RBP1.87□□□□□ -2.11
PRKDC-208ENST00000536710 C10orf55Q5SWW7 151 aa1.87□□□□□ -2.11
PRKDC-208ENST00000536710 HACD4Q5VWC8 232 aa1.87□□□□□ -2.11
PRKDC-208ENST00000536710 GOLT1AQ6ZVE7 132 aa1.87□□□□□ -2.11
PRKDC-208ENST00000536710 LINC00311Q8N616 119 aa1.87□□□□□ -2.11
PRKDC-208ENST00000536710 C12orf29Q8N999 325 aa1.87□□□□□ -2.11
PRKDC-208ENST00000536710 CDC26Q8NHZ8 85 aa1.87□□□□□ -2.11
PRKDC-208ENST00000536710 SCAPERQ9BY12 1400 aa1.87□□□□□ -2.11
PRKDC-208ENST00000536710 CYSTM1Q9H1C7 97 aa1.87□□□□□ -2.11
PRKDC-208ENST00000536710 ADGRL3Q9HAR2 1447 aa1.87□□□□□ -2.11
PRKDC-208ENST00000536710 PARVBQ9HBI1 364 aa1.87□□□□□ -2.11
PRKDC-208ENST00000536710 MED9Q9NWA0 146 aa1.87□□□□□ -2.11
PRKDC-208ENST00000536710 EPDR1Q9UM22 224 aa1.87□□□□□ -2.11
PRKDC-208ENST00000536710 SLC35A3Q9Y2D2 325 aa1.87□□□□□ -2.11
PRKDC-208ENST00000536710 DEPDC5O75140 1603 aa1.87□□□□□ -2.11
PRKDC-208ENST00000536710 EIF2AK4Q9P2K8 1649 aaKnown RBP1.87□□□□□ -2.11
PRKDC-208ENST00000536710 TCOF1Q13428 1488 aaKnown RBP1.87□□□□□ -2.11
PRKDC-208ENST00000536710 IQSEC2Q5JU85 1478 aa1.87□□□□□ -2.11
PRKDC-208ENST00000536710 KDM5AP29375 1690 aaKnown RBP1.86□□□□□ -2.11
PRKDC-208ENST00000536710 ARHGAP5Q13017 1502 aa1.86□□□□□ -2.11
PRKDC-208ENST00000536710 ARHGEF5Q12774 1597 aa1.86□□□□□ -2.11
PRKDC-208ENST00000536710 MAST1Q9Y2H9 1570 aa1.86□□□□□ -2.11
PRKDC-208ENST00000536710 CEP170BQ9Y4F5 1589 aaPredicted RBP1.86□□□□□ -2.11
PRKDC-208ENST00000536710 TRAPPC8Q9Y2L5 1435 aa1.86□□□□□ -2.11
PRKDC-208ENST00000536710 TRAV3A0A0B4J244 114 aa1.86□□□□□ -2.11
PRKDC-208ENST00000536710 C19orf84I3L1E1 186 aa1.86□□□□□ -2.11
PRKDC-208ENST00000536710 SRP14P37108 136 aaKnown RBP1.86□□□□□ -2.11
PRKDC-208ENST00000536710 PIGPP57054 158 aa1.86□□□□□ -2.11
PRKDC-208ENST00000536710 UNQ6190/PRO20217Q6UXQ8 127 aa1.86□□□□□ -2.11
PRKDC-208ENST00000536710 PXT1Q8NFP0 134 aa1.86□□□□□ -2.11
PRKDC-208ENST00000536710 ARMC1Q9NVT9 282 aa1.86□□□□□ -2.11
PRKDC-208ENST00000536710 NHP2Q9NX24 153 aaKnown RBP1.86□□□□□ -2.11
PRKDC-208ENST00000536710 MUC19Q7Z5P9 8384 aa1.86□□□□□ -2.11
PRKDC-208ENST00000536710 MBD5Q9P267 1494 aa1.86□□□□□ -2.11
PRKDC-208ENST00000536710 DOCK5Q9H7D0 1870 aa1.86□□□□□ -2.11
PRKDC-208ENST00000536710 EHBP1L1Q8N3D4 1523 aa1.86□□□□□ -2.11
PRKDC-208ENST00000536710 CEP152O94986 1710 aa1.86□□□□□ -2.11
PRKDC-208ENST00000536710 UBR1Q8IWV7 1749 aa1.86□□□□□ -2.11
PRKDC-208ENST00000536710 KIAA1107Q9UPP5 1409 aa1.85□□□□□ -2.11
PRKDC-208ENST00000536710 CAMSAP1Q5T5Y3 1602 aa1.85□□□□□ -2.11
PRKDC-208ENST00000536710 C7orf71A4D174 169 aa1.85□□□□□ -2.11
PRKDC-208ENST00000536710 SULT1B1O43704 296 aa1.85□□□□□ -2.11
PRKDC-208ENST00000536710 UBL3O95164 117 aa1.85□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms